Cp4.1LG16g01900 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g01900
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing family protein
Location	Cp4.1LG16 : 4096698 .. 4101366 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTCGCAAACGCTTTGCCTTCTCTTCCACATTTAGCTCACTTCCAGATCCCCACGACCTTAGTAGTTGTCTTCACTTTTTTTTTTTTCAAAACAAAATTTAACATTCCAATCTCTTCTTCAATTTCATTCCCTCATTATCACCACTGGCAACTCGAACAATGCCTTCTTTGCCACTAAGCTCATGGCCTTTTATGCCTGTCATGGGCAACCTGCGTTCTCCACGCAATTGTTTCGATTTGTTCATCCTAAGGACAAATTTCTTTGGAATTCCATTATCCAATCCCATTTCTCCAATGGTGATTACCTACAGGCATTTGATTTCTACCTTGAGATGCGAGCATCGAGTAGCCTGCCAAACCAATTTACAATTCCCATGGTGGTTTCCACTTGTGCGGAACTAATGATGCTCAACCATGGCATGAACATTCATGGGTTGGCTTTGAAACTTGGGCTCTTTGTTGGTAATTCTGCTGTTGGTTCTTCTTTGATATACATGTATTCCAAATGTGGTAACGCAGAAAGTGCATCTCTCATGTTCAATGAAATTACTGTTAAGGATGTAGTTGCTTGGACTGCCCTTATAATTGGTTATGTCCAGAATAACGAGAGTGAGAAAGGTTTGAAATGTTTGTTTGAGATGCATAGGAATGGATGTACCCCAAATTATAGAACAATAGGAGGTGGGTTTCAAGCTTGTGTTGATTTGGAGGCTTTAGTAGAGGGTAGATGCTTACATGGTTTGGCTTTAAAAAGTGGATTTCTCTGTTTTGAAGTCGTTAAATCTTCTATTCTCTCGATGTACTCGAGGTGTGGGTCACCTGAAGAAGCTTATCGTTGTTTTTTTAAATTGGAGCAAAAAGATCTCATCTCTTGGACATCAATTATTGCAGTTCACTCTAAACTCGGGTTGATGAGTGAATGTCTACATTTATTTTGGGAGATGCAGGCCAGTGGAATAATTCCAGATGACATCGTGATCAGTTGCATGCTTCTGGGTTTTGGTAATTTTGATAGAATCTCTGAAGGAAAAGCCTTACATGCTTGGATTCTGAAACAATGTTGTGCAATGAGTGGAATAACTCACAATGCATTACTCTCCATGTATTGTAAGTTCGGACTCTTACGTATGGCAGATAAGATCTTCCATAGTTTCCATAAAAGCAGTGAAGATTGGAACACAATGATATTAGGATACAGCAATATGGGGGAGAAAGAAAAGTGTATAGACTTTTTCAGGGAGATGCACCTCTTAGGCATAGAACCTGATTTGAATAGTTTAGTTTCGGTCATTTCTTCATGTTTACCAGTTGGAGCTGTGAATATTGGTCGGTCTGTGCACTGCTATGCGATTAAAAACTCGATCATTGACAATGTATCAATAGCTAACTCACTCTTGGACATGTACGGAAAAAGTGGTAATTTAACCGCCGCATGGAGGATATTTCATAGGACACAACAAAAGGATATTGTCTCATGGAATACACTGATTTCGTCCTACAAGCAAAGTGGGCACCCTTCTGAAGCAATTGATTTATTCGATAAAATGATTAAAGAAAAGTTCAACCCCAACGGAGTTACCTGCGTAATAGTTCTTTCGGCATGTTCTCATCTTGCATCCTTAGATAAAGGTGAAAAAATTCACCAGTACATAAAGGAAAATGGATTTGAGACTGATATCACTGTTAGAACTGCATTGATTGATATGTATGCAAAATGTGGGGAGCTCGAGACATCAAGAACATTGTTCAACTCAATGGAAGAGAGGGATGTTATTTTGTGTAATGTCATGATATCAAATTATGGGATGCATGGACATGTGGAATCTGCTATTGAGATCTTCCAACTAATGGAAGACTCAAACATTAAACCAAATGCACTTACCTTTCTTTCTCTTCTCTCAGCTTGTAATCATGCAGGCCATATGGTAGAAGGAAGGCGTCTCTTTGATGTAATGCATAAATATGGTATCAAACCTAGTCTTAAGCACTATGCTTCTATGGTAGATCTTCTTGGCAGGTCAGGTAGCCTTGAAGAAGCGGAGGCTCTTGTTTTATCAATGCCCATCACGCCTGATGGCACTGTGTGGGGCTCCTTGTTAAGTGCTTGTAAACTTCATAATGAATTTGAAATGGGTATAAGGATTGCCAGACATGCAATTGAGTCTGATCCAAAAAATGATGGGTATTATATAGTATTGTCTGATCTGTATGGTTGCTTGGGAAGGTGGGAGGAAGTGGAAAAAGTGCGAGGCTTGATGAAGCAAAGAGGGGTGGAGAAGAGAGCTGGCTGGAGTGCCTTATGAACGAAGTAATTGCTTGAAACATTTGATACCTTTGACTATACAACTTCGTCGAGTCTTGAGAATTATTTCGAAGGACGAATTTGACAATCAATATGAAAAAAAGTTCGATCCTCACTCGTTCGGAACTTTTTCGACTTTGGTAATGCTTCCTCATACATTGAAAATAGTTTGCTTTCTGGTACATTTTCTTTTGGATCAAATTACGTTACTTTATATAATTCTTTCCAAATGGTTTATGCAGGTTCTGATATCAACCTTCGATTCGTTACCTTACATGGAAGAACGTATCGAGGAACTCACTGAAAAGTAGGCTTCCTTTTCGTGTAGCTGGTAATGTCGTTTGGAACTCGGTTCGAGCATTCACAAGAATCCATATGGGTATGTGGGCATTATTCAGGAAACAACTAAGAAATGGCAATAGATAAGTTATATATTAGTTATTGAATTAAATTCATAAACATTATATATTAAGTTATATTGTATAAAGTTATTTCTATTATGAAACCAAGAATAAACAAAATATTTATGTATACTTCCATTAGACATATTTGATTGTTCTTCAAAATATTACTAATGTATAAGATTTCTTTTTTGCAAATGTATTTGATATGAAATTAATTATAAAGAAAATGTTATATATTGTTTATTTAATTATTCATTATTTGCTCGGTTAATTGAATTGATATAAGGTCTATTTGGTTTAACTTTTCGAGTACTTAAAAGGTAAAACATGTTTTTACCCTGTGTTGGAATCCCTTTTAATTTGGAGGAATTTTGAATTATAATGATTTCGGATGAACATCATTGTTTGTTATCATAAGAAAGAGAAAGTCGAAGGTTTAGATGAATGATCTTTGTGAGATCACCCATGAATCTCGAGAACTAAGTGTGGGGCTTGAAGGTCCTACTGTATTTCAGCCCTGGAGCCTGAAATTGTTACCACAGTTGCCACACGTGAGATCCTGATCGTCTTCCTTCTAGTGTTGTTGTCCGTTGGGAGAAGGAAAGTTAGTGGGTTTTCCTTCCAGGATCGAAGAAGGTCAAACTCTGGGTGGGTGGGCTGCTCAAGTTTTCCCTACGCTGTGGTTTTACGAGAATAAACTTGTTTTCTTTAATCGGTGTAAAGAGTTCTAGAGCACGAGGGAGTGAGCTTTCATTCCAACGACCAAAATGGTTTGAAAATTTTAAGAAAAAATTTCTTTGTTATTAACATGTTAATTAAAATTTTAAAAATATAATAATAATTTTAGTAAACTAAGGGTGCTTGCCATTACGTGCAATAGAAGTACATGTACACACAAAATACATGAGATTCCTATGGTTTTCATCTTTAAATCATCTTCGTGACACAACCCTATACACCATTCATATATTACTCTAAGTAACATGTAGGTGTTGGTTTTCATACACTCATCCTCATTTTCTTCAATTAGCGTCATGTCTTTAGAAAAACAAATCATTGTCAGCCATCATGACATTTAATACATGCACGTCATCATAACATGGAATAACATCATGTTAAACTATCTCATCATCATACAATCTTAGGTCATCATATTATCTTACTTGGTCATCATTATGTCATCATCTTATCTTACATCGCCATTAATATAGTCTAATATTGAACAATAATAGAATATTATTTTTATTATTTTCTCATAATCTAATATTATATGAAAAAAGTCAAGTTGGTAATAAAATATAAATGTTTAAGGGTGGAGCGTGGAAGGTATGTTCGTGAATCACGTGATGGAAGAGAACGTTAAAATGACTAAAATGCCCCTATTATTATTATTATTATGAGTACAAATAGGCATTCATAAACTAATACTAATAATAAGAATCACTTTATTCCCCAAAAGTGGATTTTCCATTGGCATCATAACCAACCATGTGGTTTCTGATGCCAAAACATCCACCATGTTCTTCAAATCATGGGCTTCCATTTGTAGTACACTCTATAATACTAATAATAAGAATCTCCCCACGTTGTCATCTGAGTTGACACCATGTTTTGATAGAACGTTCGCCACGGATCCAAATGGATTGCATACACTTTACGTTAAGTCTTTTGAAATCTTTGTCACTAACCCGAAAGAGGTGATCTCGGATGATGTGGTGTATGCCACGTTTGAGCTTACACGCATTGACATAGAGAAGGTGAGGAGAAGAGTGGTAGCAACTTCTTCATCCACTCCTCGTCGTTTAACCACTTTTATGTTGGCGTTTTCTCTTGTATCGACTTGTATTCTCTTGTATGGGGTTTTTTCAATGGCGGAGAGTAGAAATGGGGATGGAGGAGTTGAGCTTGGAATTGCTCTTCCACCTCAAGCTATGGACAAGTTTTGCTCTATATTTTCAGAG

mRNA sequence

AATTTCGCAAACGCTTTGCCTTCTCTTCCACATTTAGCTCACTTCCAGATCCCCACGACCTTATTGTCTTCACTTTTTTTTTTTTCAAAACAAAATTTAACATTCCAATCTCTTCTTCAATTTCATTCCCTCATTATCACCACTGGCAACTCGAACAATGCCTTCTTTGCCACTAAGCTCATGGCCTTTTATGCCTGTCATGGGCAACCTGCGTTCTCCACGCAATTGTTTCGATTTGTTCATCCTAAGGACAAATTTCTTTGGAATTCCATTATCCAATCCCATTTCTCCAATGGTGATTACCTACAGGCATTTGATTTCTACCTTGAGATGCGAGCATCGAGTAGCCTGCCAAACCAATTTACAATTCCCATGGTGGTTTCCACTTGTGCGGAACTAATGATGCTCAACCATGGCATGAACATTCATGGGTTGGCTTTGAAACTTGGGCTCTTTGTTGGTAATTCTGCTGTTGGTTCTTCTTTGATATACATGTATTCCAAATGTGGTAACGCAGAAAGTGCATCTCTCATGTTCAATGAAATTACTGTTAAGGATGTAGTTGCTTGGACTGCCCTTATAATTGGTTATGTCCAGAATAACGAGAGTGAGAAAGGTTTGAAATGTTTGTTTGAGATGCATAGGAATGGATGTACCCCAAATTATAGAACAATAGGAGGTGGGTTTCAAGCTTGTGTTGATTTGGAGGCTTTAGTAGAGGGTAGATGCTTACATGGTTTGGCTTTAAAAAGTGGATTTCTCTGTTTTGAAGTCGTTAAATCTTCTATTCTCTCGATGTACTCGAGGTGTGGGTCACCTGAAGAAGCTTATCGTTGTTTTTTTAAATTGGAGCAAAAAGATCTCATCTCTTGGACATCAATTATTGCAGTTCACTCTAAACTCGGGTTGATGAGTGAATGTCTACATTTATTTTGGGAGATGCAGGCCAGTGGAATAATTCCAGATGACATCGTGATCAGTTGCATGCTTCTGGGTTTTGGTAATTTTGATAGAATCTCTGAAGGAAAAGCCTTACATGCTTGGATTCTGAAACAATGTTGTGCAATGAGTGGAATAACTCACAATGCATTACTCTCCATGTATTGTAAGTTCGGACTCTTACGTATGGCAGATAAGATCTTCCATAGTTTCCATAAAAGCAGTGAAGATTGGAACACAATGATATTAGGATACAGCAATATGGGGGAGAAAGAAAAGTGTATAGACTTTTTCAGGGAGATGCACCTCTTAGGCATAGAACCTGATTTGAATAGTTTAGTTTCGGTCATTTCTTCATGTTTACCAGTTGGAGCTGTGAATATTGGTCGGTCTGTGCACTGCTATGCGATTAAAAACTCGATCATTGACAATGTATCAATAGCTAACTCACTCTTGGACATGTACGGAAAAAGTGGTAATTTAACCGCCGCATGGAGGATATTTCATAGGACACAACAAAAGGATATTGTCTCATGGAATACACTGATTTCGTCCTACAAGCAAAGTGGGCACCCTTCTGAAGCAATTGATTTATTCGATAAAATGATTAAAGAAAAGTTCAACCCCAACGGAGTTACCTGCGTAATAGTTCTGATATCAACCTTCGATTCGTTACCTTACATGGAAGAACGTATCGAGGAACTCACTGAAAAAACGTTCGCCACGGATCCAAATGGATTGCATACACTTTACGTTAAGTCTTTTGAAATCTTTGTCACTAACCCGAAAGAGGTGATCTCGGATGATGTGGTGTATGCCACGTTTGAGCTTACACGCATTGACATAGAGAAGGTGAGGAGAAGAGTGGTAGCAACTTCTTCATCCACTCCTCGTCGTTTAACCACTTTTATGTTGGCGTTTTCTCTTGTATCGACTTGTATTCTCTTGTATGGGGTTTTTTCAATGGCGGAGAGTAGAAATGGGGATGGAGGAGTTGAGCTTGGAATTGCTCTTCCACCTCAAGCTATGGACAAGTTTTGCTCTATATTTTCAGAG

Coding sequence (CDS)

AATTTCGCAAACGCTTTGCCTTCTCTTCCACATTTAGCTCACTTCCAGATCCCCACGACCTTATTGTCTTCACTTTTTTTTTTTTCAAAACAAAATTTAACATTCCAATCTCTTCTTCAATTTCATTCCCTCATTATCACCACTGGCAACTCGAACAATGCCTTCTTTGCCACTAAGCTCATGGCCTTTTATGCCTGTCATGGGCAACCTGCGTTCTCCACGCAATTGTTTCGATTTGTTCATCCTAAGGACAAATTTCTTTGGAATTCCATTATCCAATCCCATTTCTCCAATGGTGATTACCTACAGGCATTTGATTTCTACCTTGAGATGCGAGCATCGAGTAGCCTGCCAAACCAATTTACAATTCCCATGGTGGTTTCCACTTGTGCGGAACTAATGATGCTCAACCATGGCATGAACATTCATGGGTTGGCTTTGAAACTTGGGCTCTTTGTTGGTAATTCTGCTGTTGGTTCTTCTTTGATATACATGTATTCCAAATGTGGTAACGCAGAAAGTGCATCTCTCATGTTCAATGAAATTACTGTTAAGGATGTAGTTGCTTGGACTGCCCTTATAATTGGTTATGTCCAGAATAACGAGAGTGAGAAAGGTTTGAAATGTTTGTTTGAGATGCATAGGAATGGATGTACCCCAAATTATAGAACAATAGGAGGTGGGTTTCAAGCTTGTGTTGATTTGGAGGCTTTAGTAGAGGGTAGATGCTTACATGGTTTGGCTTTAAAAAGTGGATTTCTCTGTTTTGAAGTCGTTAAATCTTCTATTCTCTCGATGTACTCGAGGTGTGGGTCACCTGAAGAAGCTTATCGTTGTTTTTTTAAATTGGAGCAAAAAGATCTCATCTCTTGGACATCAATTATTGCAGTTCACTCTAAACTCGGGTTGATGAGTGAATGTCTACATTTATTTTGGGAGATGCAGGCCAGTGGAATAATTCCAGATGACATCGTGATCAGTTGCATGCTTCTGGGTTTTGGTAATTTTGATAGAATCTCTGAAGGAAAAGCCTTACATGCTTGGATTCTGAAACAATGTTGTGCAATGAGTGGAATAACTCACAATGCATTACTCTCCATGTATTGTAAGTTCGGACTCTTACGTATGGCAGATAAGATCTTCCATAGTTTCCATAAAAGCAGTGAAGATTGGAACACAATGATATTAGGATACAGCAATATGGGGGAGAAAGAAAAGTGTATAGACTTTTTCAGGGAGATGCACCTCTTAGGCATAGAACCTGATTTGAATAGTTTAGTTTCGGTCATTTCTTCATGTTTACCAGTTGGAGCTGTGAATATTGGTCGGTCTGTGCACTGCTATGCGATTAAAAACTCGATCATTGACAATGTATCAATAGCTAACTCACTCTTGGACATGTACGGAAAAAGTGGTAATTTAACCGCCGCATGGAGGATATTTCATAGGACACAACAAAAGGATATTGTCTCATGGAATACACTGATTTCGTCCTACAAGCAAAGTGGGCACCCTTCTGAAGCAATTGATTTATTCGATAAAATGATTAAAGAAAAGTTCAACCCCAACGGAGTTACCTGCGTAATAGTTCTGATATCAACCTTCGATTCGTTACCTTACATGGAAGAACGTATCGAGGAACTCACTGAAAAAACGTTCGCCACGGATCCAAATGGATTGCATACACTTTACGTTAAGTCTTTTGAAATCTTTGTCACTAACCCGAAAGAGGTGATCTCGGATGATGTGGTGTATGCCACGTTTGAGCTTACACGCATTGACATAGAGAAGGTGAGGAGAAGAGTGGTAGCAACTTCTTCATCCACTCCTCGTCGTTTAACCACTTTTATGTTGGCGTTTTCTCTTGTATCGACTTGTATTCTCTTGTATGGGGTTTTTTCAATGGCGGAGAGTAGAAATGGGGATGGAGGAGTTGAGCTTGGAATTGCTCTTCCACCTCAAGCTATGGACAAGTTTTGCTCTATATTTTCAGAG

Protein sequence

NFANALPSLPHLAHFQIPTTLLSSLFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKGLKCLFEMHRNGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDDIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFHSFHKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIGRSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVLISTFDSLPYMEERIEELTEKTFATDPNGLHTLYVKSFEIFVTNPKEVISDDVVYATFELTRIDIEKVRRRVVATSSSTPRRLTTFMLAFSLVSTCILLYGVFSMAESRNGDGGVELGIALPPQAMDKFCSIFSE

Homology

[Close]

BLAST of Cp4.1LG16g01900 vs. Swiss-Prot
Match: PP359_ARATH (Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E98 PE=2 SV=2)

HSP 1 Score: 478.0 bits (1229), Expect = 1.7e-133
Identity = 242/508 (47.64%), Postives = 339/508 (66.73%), Query Frame = 1


Query: 31  QNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHPKDKFLWNS 90
           Q+L+ +SL + ++LIIT G S N F A+KL++ YA +G+P  S+++F  V  +D FLWNS
Sbjct: 36  QSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNS 95

Query: 91  IIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLALKLG 150
           II++HFSNGDY ++  F+  M  S   P+ FT PMVVS CAEL+  + G  +HGL LK G
Sbjct: 96  IIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHG 155

Query: 151 LFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKGLKCL 210
            F  N+AVG+S +Y YSKCG  + A L+F+E+  +DVVAWTA+I G+VQN ESE GL  L
Sbjct: 156 GFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYL 215

Query: 211 FEMHRNGC---TPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSILSMY 270
            +MH  G     PN RT+  GFQAC +L AL EGRCLHG A+K+G    + V+SS+ S Y
Sbjct: 216 CKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFY 275

Query: 271 SRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDDIVIS 330
           S+ G+P EAY  F +L  +D+ SWTSIIA  ++ G M E   +FWEMQ  G+ PD +VIS
Sbjct: 276 SKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVIS 335

Query: 331 CMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIF--HSFH 390
           C++   G    + +GKA H ++++ C ++     N+LLSMYCKF LL +A+K+F   S  
Sbjct: 336 CLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEE 395

Query: 391 KSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIGRSV 450
            + E WNTM+ GY  M    KCI+ FR++  LGIE D  S  SVISSC  +GAV +G+S+
Sbjct: 396 GNKEAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSL 455

Query: 451 HCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQSGHP 510
           HCY +K S+   +S+ NSL+D+YGK G+LT AWR+F      ++++WN +I+SY      
Sbjct: 456 HCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEA-DTNVITWNAMIASYVHCEQS 515

Query: 511 SEAIDLFDKMIKEKFNPNGVTCVIVLIS 534
            +AI LFD+M+ E F P+ +T V +L++
Sbjct: 516 EKAIALFDRMVSENFKPSSITLVTLLMA 542

[Close]

BLAST of Cp4.1LG16g01900 vs. Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 1.1e-65
Identity = 152/505 (30.10%), Postives = 275/505 (54.46%), Query Frame = 1


Query: 29  SKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHP-KDKFL 88
           S  NL    L + H+L+I+ G  ++ FF+ KL+  Y+   +PA S  +FR V P K+ +L
Sbjct: 16  SSSNLN--ELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYL 75

Query: 89  WNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLAL 148
           WNSII++   NG + +A +FY ++R S   P+++T P V+  CA L     G  ++   L
Sbjct: 76  WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 135

Query: 149 KLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKGL 208
            +G F  +  VG++L+ MYS+ G    A  +F+E+ V+D+V+W +LI GY  +   E+ L
Sbjct: 136 DMG-FESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEAL 195

Query: 209 KCLFEMHRNGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSILSMY 268
           +   E+  +   P+  T+     A  +L  + +G+ LHG ALKSG     VV + +++MY
Sbjct: 196 EIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMY 255

Query: 269 SRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDDIVIS 328
            +   P +A R F +++ +D +S+ ++I  + KL ++ E + +F E       PD + +S
Sbjct: 256 LKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVS 315

Query: 329 CMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFHSFH-K 388
            +L   G+   +S  K ++ ++LK    +     N L+ +Y K G +  A  +F+S   K
Sbjct: 316 SVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECK 375

Query: 389 SSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIGRSVH 448
            +  WN++I GY   G+  + +  F+ M ++  + D  + + +IS    +  +  G+ +H
Sbjct: 376 DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLH 435

Query: 449 CYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQSGHPS 508
              IK+ I  ++S++N+L+DMY K G +  + +IF      D V+WNT+IS+  + G  +
Sbjct: 436 SNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFA 495

Query: 509 EAIDLFDKMIKEKFNPNGVTCVIVL 532
             + +  +M K +  P+  T ++ L
Sbjct: 496 TGLQVTTQMRKSEVVPDMATFLVTL 516

[Close]

BLAST of Cp4.1LG16g01900 vs. Swiss-Prot
Match: PP146_ARATH (Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.9e-65
Identity = 149/512 (29.10%), Postives = 262/512 (51.17%), Query Frame = 1


Query: 23  SSLFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHP 82
           S  F    +     SL Q H ++   G   +   ATKL++ Y   G    +  +F  +  
Sbjct: 45  SPCFLLLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPE 104

Query: 83  KDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNI 142
            D +LW  +++ +  N + ++    Y  +       +       +  C EL  L++G  I
Sbjct: 105 PDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKI 164

Query: 143 HGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNE 202
           H   +K+  F  ++ V + L+ MY+KCG  +SA  +FN+IT+++VV WT++I GYV+N+ 
Sbjct: 165 HCQLVKVPSF--DNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDL 224

Query: 203 SEKGLKCLFEMHRNGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSS 262
            E+GL     M  N    N  T G    AC  L AL +G+  HG  +KSG      + +S
Sbjct: 225 CEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTS 284

Query: 263 ILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPD 322
           +L MY +CG    A R F +    DL+ WT++I  ++  G ++E L LF +M+   I P+
Sbjct: 285 LLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPN 344

Query: 323 DIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFH 382
            + I+ +L G G  + +  G+++H   +K     + +  NAL+ MY K    R A  +F 
Sbjct: 345 CVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVA-NALVHMYAKCYQNRDAKYVFE 404

Query: 383 -SFHKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNI 442
               K    WN++I G+S  G   + +  F  M+   + P+  ++ S+ S+C  +G++ +
Sbjct: 405 MESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAV 464

Query: 443 GRSVHCYAIKNSII--DNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSY 502
           G S+H Y++K   +   +V +  +LLD Y K G+  +A  IF   ++K+ ++W+ +I  Y
Sbjct: 465 GSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGY 524

Query: 503 KQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVL 532
            + G    +++LF++M+K++  PN  T   +L
Sbjct: 525 GKQGDTIGSLELFEEMLKKQQKPNESTFTSIL 553

[Close]

BLAST of Cp4.1LG16g01900 vs. Swiss-Prot
Match: PP320_ARATH (Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis thaliana GN=DOT4 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 2.1e-64
Identity = 154/533 (28.89%), Postives = 262/533 (49.16%), Query Frame = 1


Query: 1   NFANALPSLPHLAHFQIPTTLLSSLFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKL 60
           N  NA+  L     + I    L S+      + + +   +  + I   G   ++   +KL
Sbjct: 76  NLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKL 135

Query: 61  MAFYACHGQPAFSTQLFRFVHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQ 120
              Y   G    ++++F  V  +    WN ++     +GD+  +   + +M +S    + 
Sbjct: 136 SLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDS 195

Query: 121 FTIPMVVSTCAELMMLNHGMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFN 180
           +T   V  + + L  ++ G  +HG  LK G    NS VG+SL+  Y K    +SA  +F+
Sbjct: 196 YTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNS-VGNSLVAFYLKNQRVDSARKVFD 255

Query: 181 EITVKDVVAWTALIIGYVQNNESEKGLKCLFEMHRNGCTPNYRTIGGGFQACVDLEALVE 240
           E+T +DV++W ++I GYV N  +EKGL    +M  +G   +  TI   F  C D   +  
Sbjct: 256 EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISL 315

Query: 241 GRCLHGLALKSGFLCFEVVKSSILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSK 300
           GR +H + +K+ F   +   +++L MYS+CG  + A   F ++  + ++S+TS+IA +++
Sbjct: 316 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 375

Query: 301 LGLMSECLHLFWEMQASGIIPDDIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGIT 360
            GL  E + LF EM+  GI PD   ++ +L     +  + EGK +H WI +         
Sbjct: 376 EGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFV 435

Query: 361 HNALLSMYCKFGLLRMADKIFHSFH-KSSEDWNTMILGYSNMGEKEKCIDFFR-EMHLLG 420
            NAL+ MY K G ++ A+ +F     K    WNT+I GYS      + +  F   +    
Sbjct: 436 SNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKR 495

Query: 421 IEPDLNSLVSVISSCLPVGAVNIGRSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAW 480
             PD  ++  V+ +C  + A + GR +H Y ++N    +  +ANSL+DMY K G L  A 
Sbjct: 496 FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAH 555

Query: 481 RIFHRTQQKDIVSWNTLISSYKQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVL 532
            +F     KD+VSW  +I+ Y   G   EAI LF++M +     + ++ V +L
Sbjct: 556 MLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLL 607

[Close]

BLAST of Cp4.1LG16g01900 vs. Swiss-Prot
Match: PP398_ARATH (Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2)

HSP 1 Score: 243.4 bits (620), Expect = 6.9e-63
Identity = 175/670 (26.12%), Postives = 313/670 (46.72%), Query Frame = 1


Query: 21  LLSSLFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLM-AFYACHGQPAFSTQLFRF 80
           LLS L   +    + + +   H  I+T G   +      L+  ++ C    +       F
Sbjct: 6   LLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENF 65

Query: 81  VHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEM-RASSSLPNQFTIPMVVSTCAELMMLNH 140
               D ++WNS++  +  N  +    + +  +   S  +P+ FT P V+     L     
Sbjct: 66  DIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFL 125

Query: 141 GMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYV 200
           G  IH L +K G +V +  V SSL+ MY+K    E++  +F+E+  +DV +W  +I  + 
Sbjct: 126 GRMIHTLVVKSG-YVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFY 185

Query: 201 QNNESEKGLKCLFEMHRNGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEV 260
           Q+ E+EK L+    M  +G  PN  ++     AC  L  L  G+ +H   +K GF   E 
Sbjct: 186 QSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEY 245

Query: 261 VKSSILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASG 320
           V S+++ MY +C   E A   F K+ +K L++W S+I  +   G    C+ +   M   G
Sbjct: 246 VNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEG 305

Query: 321 IIPDDIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMAD 380
             P    ++ +L+       +  GK +H ++++         + +L+ +Y K G   +A+
Sbjct: 306 TRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAE 365

Query: 381 KIFHSFHKS-SEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVG 440
            +F    K  +E WN MI  Y ++G   K ++ + +M  +G++PD+ +  SV+ +C  + 
Sbjct: 366 TVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLA 425

Query: 441 AVNIGRSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLIS 500
           A+  G+ +H    ++ +  +  + ++LLDMY K GN   A+RIF+   +KD+VSW  +IS
Sbjct: 426 ALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMIS 485

Query: 501 SYKQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVLIS-----------TFDSLPYMEERIE 560
           +Y   G P EA+  FD+M K    P+GVT + VL +            F S    +  IE
Sbjct: 486 AYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIE 545

Query: 561 ELTEK-TFATDPNGLHTLYVKSFEIFVTNPKEVISDDVVYATFELTRIDIE-----KVRR 620
            + E  +   D  G     ++++EI    P+   + +++   F    + +E     ++ R
Sbjct: 546 PIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIAR 605

Query: 621 RVVATSSSTPRRLTTFMLAFSLVSTCILLYGVFSMAESRNGDGGVELGIALPP-----QA 666
            +V    + P   +T+M+ F+L ++     G    A  R      E+G+   P     + 
Sbjct: 606 LLV---ENYPDDASTYMVLFNLYAS-----GESWDAARRVRLKMKEMGLRKKPGCSWIEM 665

[Close]

BLAST of Cp4.1LG16g01900 vs. TrEMBL
Match: A0A0A0LRH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G439160 PE=4 SV=1)

HSP 1 Score: 882.1 bits (2278), Expect = 4.2e-253
Identity = 438/564 (77.66%), Postives = 485/564 (85.99%), Query Frame = 1


Query: 12  LAHFQIPTTLLSSLFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPA 71
           L+    P   L S  FFSK NLTFQSLLQFHSLIITTGNSNN FFATKLMAFYA H +PA
Sbjct: 32  LSDSHYPNNCLHS--FFSKPNLTFQSLLQFHSLIITTGNSNNVFFATKLMAFYAYHRKPA 91

Query: 72  FSTQLFRFVHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCA 131
           FST LFR +H KD FLWNSIIQSHFSNGDY +AFDFYL+MRASSSLPNQFT+PMVVSTCA
Sbjct: 92  FSTHLFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCA 151

Query: 132 ELMMLNHGMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWT 191
           ELMM NHGMNIHGL  KLGLFVGNSA+GSS IYMYSKCG+ ESAS+MF+EITVKDVV WT
Sbjct: 152 ELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWT 211

Query: 192 ALIIGYVQNNESEKGLKCLFEMHRNGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKS 251
           ALI+GYVQNNES +GLKCLFEMHR G TPNY+TIG GFQACVDL+ALVEG+CLHGLALK+
Sbjct: 212 ALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKN 271

Query: 252 GFLCFEVVKSSILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLF 311
           GFLCFEVVKS+ILSMYSRCGSPEEAYRCF KL+QKDLISWTSIIAVHSK GLMSECLHLF
Sbjct: 272 GFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLF 331

Query: 312 WEMQASGIIPDDIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKF 371
           WEMQAS IIPD+IVISCML+GFGN DRI EGKA HA ILKQCCA+SGITHNALLSMYCKF
Sbjct: 332 WEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKF 391

Query: 372 GLLRMADKIFHSFHKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVIS 431
           G L  A+KIFHSFHKSSEDW+TMILGYSNMG+KEKCI F REM LLG EPDLNSLVSVIS
Sbjct: 392 GHLGTANKIFHSFHKSSEDWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVIS 451

Query: 432 SCLPVGAVNIGRSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVS 491
           SC  VGA+NIGRS+HCYAIKNSII+NVS+ANSL+DMYGKSG++TA WRIFHRT Q+D++S
Sbjct: 452 SCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVIS 511

Query: 492 WNTLISSYKQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVL-----ISTFDSLPYMEERIE 551
           WNTLISSYKQSG  +EAI LFDKM+KEK  PN VTC+IVL     +++ D    + + I+
Sbjct: 512 WNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIK 571

Query: 552 ELTEKTFATDPNGLHTLYVKSFEI 571
           E   ++  T    L  +Y K  E+
Sbjct: 572 ENGFESNITIRTALIDMYAKCGEL 593

[Close]

BLAST of Cp4.1LG16g01900 vs. TrEMBL
Match: W9QNE1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022141 PE=4 SV=1)

HSP 1 Score: 590.5 bits (1521), Expect = 2.6e-165
Identity = 293/509 (57.56%), Postives = 374/509 (73.48%), Query Frame = 1


Query: 27  FFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHPKDKF 86
           F S +  T QSLL+ H+LIIT+GNSNN F A+KL++ YA   +P  ST +F  +HPKD F
Sbjct: 36  FLSAKTSTLQSLLKSHALIITSGNSNNIFIASKLISLYASLNRPTNSTLVFYSIHPKDTF 95

Query: 87  LWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLA 146
           LWNS+I++HFSNGD+ +A   +L MRAS  +PNQFT+PMVV +CA+LM+L+ G + HGL 
Sbjct: 96  LWNSVIKAHFSNGDFQEALYLFLRMRASGFVPNQFTLPMVVGSCADLMLLDCGKSFHGLV 155

Query: 147 LKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKG 206
           LKLGL  G++  GSS +YMY KCG    A  +F+EITV+DVV+WTAL+IGYVQN ESEKG
Sbjct: 156 LKLGLLSGDNVAGSSFVYMYCKCGQMGDAYKVFDEITVRDVVSWTALVIGYVQNGESEKG 215

Query: 207 LKCLFEMHRNGC---TPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSI 266
           L+CL EMHR+G     PN+RT+ GGFQAC ++ AL EGRCLHGL +K+G    E VKSSI
Sbjct: 216 LECLCEMHRSGGESERPNFRTLEGGFQACGNMGALAEGRCLHGLVVKTGLGSSEAVKSSI 275

Query: 267 LSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDD 326
           LSMYS+CG+P EA   F ++  KDL+SW S+I V+++ GLM+ECL+LF EMQ  G+ PD+
Sbjct: 276 LSMYSKCGTPVEARFSFCEVTNKDLLSWMSVIGVYTRFGLMNECLNLFQEMQIGGLFPDE 335

Query: 327 IVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFHS 386
           IVISCML GFGN   +  GKA HA I+++   +  + HN+LL MY KFGLL +A+K+F  
Sbjct: 336 IVISCMLWGFGNSMFVKPGKAFHALIIRRDYLLGEMVHNSLLFMYSKFGLLNIAEKLFSK 395

Query: 387 FHK-SSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIG 446
             + + E  +TMI GYS +G   KCI+ FREMHLLG+E + +SLVSVISSC  +GA  +G
Sbjct: 396 MRQWTKESCSTMISGYSKIGHSAKCIELFREMHLLGVEVNSDSLVSVISSCCQLGATRLG 455

Query: 447 RSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQS 506
           RS+HCY IKN I +NVS+ANSL+DMYGK G LT AWR+F R  QKD+V+WNT+IS Y   
Sbjct: 456 RSLHCYVIKNFIDNNVSVANSLIDMYGKRGELTLAWRMFCRA-QKDVVTWNTIISCYIHC 515

Query: 507 GHPSEAIDLFDKMIKEKFNPNGVTCVIVL 532
           G   EAI LFDKMI E   PN  T  +VL
Sbjct: 516 GQFEEAIALFDKMISENLYPNSATLAMVL 543

[Close]

BLAST of Cp4.1LG16g01900 vs. TrEMBL
Match: M5W549_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021864mg PE=4 SV=1)

HSP 1 Score: 558.1 bits (1437), Expect = 1.4e-155
Identity = 286/509 (56.19%), Postives = 357/509 (70.14%), Query Frame = 1


Query: 27  FFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHPKDKF 86
           F S QN   Q L Q H+LI+T+GN+NN F A KL++FYA   +P FST++F  V PKD F
Sbjct: 37  FLSNQNSNLQYLSQSHALIVTSGNANNIFIAAKLISFYASLSKPTFSTKVFGSVCPKDTF 96

Query: 87  LWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLA 146
           LWNSII++HFSNGDY +A DF+ +MRA    P QFT+PMVV++CAELM+L HG N+HGLA
Sbjct: 97  LWNSIIKTHFSNGDYSKALDFFFQMRALGFAPTQFTLPMVVASCAELMLLEHGNNVHGLA 156

Query: 147 LKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKG 206
           LKLGLF GNSAVGSS +YMYSKCG  E A  MF E TV+DVV WTALIIGYVQN+E EKG
Sbjct: 157 LKLGLFSGNSAVGSSFVYMYSKCGRMEDAYFMFEETTVRDVVCWTALIIGYVQNDEIEKG 216

Query: 207 LKCLFEMHRNGCT---PNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSI 266
           L+CL EMHR G +   PN+RT+  G QAC DL  LVEG+CLHG  +KSG  C E VKS +
Sbjct: 217 LECLCEMHRVGGSDERPNFRTLEVGLQACGDLGTLVEGKCLHGFVVKSGIGCSEAVKSLL 276

Query: 267 LSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDD 326
           LSMYSRCG P E+Y  F +++ KDL+SWTS+I V+++ GLM ECL LF  MQ S I PD+
Sbjct: 277 LSMYSRCGVPGESYLSFCEIKDKDLLSWTSVIGVYARSGLMDECLSLFQGMQVSDIFPDE 336

Query: 327 IVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFHS 386
           IV++CML GF N   I+EGKA    ++++  A+S + H+ALLSMYCKF LL  A+K+F  
Sbjct: 337 IVVNCMLSGFKNSTTINEGKAFLGSVIRKNYALSQMVHSALLSMYCKFELLTRAEKLFFG 396

Query: 387 F-HKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIG 446
             H++ E  NTMI GY+ MG                               L +GA+++G
Sbjct: 397 MQHQNKESCNTMICGYAKMG-------------------------------LHLGAIHLG 456

Query: 447 RSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQS 506
           RS+HCY IK S+ +N+S+ANSLLDMYGKSG+L  A RIF  T Q+DI++WNT+ISSY  +
Sbjct: 457 RSLHCYLIKVSMDENISVANSLLDMYGKSGHLKIARRIFSGT-QRDIITWNTMISSYTHA 513

Query: 507 GHPSEAIDLFDKMIKEKFNPNGVTCVIVL 532
           GH +EAI LF+KMI   F PN  T V VL
Sbjct: 517 GHSAEAIALFEKMIAVNFKPNSATLVTVL 513

[Close]

BLAST of Cp4.1LG16g01900 vs. TrEMBL
Match: A0A061DJE7_THECC (Pentatricopeptide repeat (PPR) superfamily protein, putative OS=Theobroma cacao GN=TCM_001088 PE=4 SV=1)

HSP 1 Score: 555.8 bits (1431), Expect = 7.0e-155
Identity = 284/518 (54.83%), Postives = 372/518 (71.81%), Query Frame = 1


Query: 22  LSSLFFFSKQNLTFQSLLQFHSLIITTGNS-NNAFFATKLMAFYACHGQPAFSTQLFRF- 81
           L S    +  + T QSLLQ H+LIITTGNS NN F A+KL++ YA   +P FST++F   
Sbjct: 33  LHSFLSNNPSSSTLQSLLQSHALIITTGNSTNNIFIASKLISLYAFFNKPHFSTKVFDSL 92

Query: 82  -VHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNH 141
            +  KD FLWNSII+SHFSNG+Y ++F+++L+MR  ++ PN FTIPMV S CAEL     
Sbjct: 93  SIPAKDTFLWNSIIKSHFSNGNYAESFEYHLKMRLHNTPPNDFTIPMVASACAELRWEGC 152

Query: 142 GMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYV 201
           G  +HGL LK GLF  NSAVGSS +YMY+KCG+   A L+F+EI VKDVVAWTAL+IGYV
Sbjct: 153 GKYVHGLTLKFGLFAENSAVGSSFVYMYAKCGSMGDACLVFDEIIVKDVVAWTALVIGYV 212

Query: 202 QNNESEKGLKCLFEMHRNGCT----PNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFL 261
           QN ESEK LK L +MHR G      PN+RT+ GG QAC  L AL EG+CLHG  +K+G  
Sbjct: 213 QNGESEKALKRLRDMHRVGGDGEKRPNFRTLEGGLQACGSLCALYEGKCLHGFVVKTGLG 272

Query: 262 CFEVVKSSILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEM 321
            + VV+SSILSMYSRCGS  ++Y  F ++  KD+ISWTSII V+++ G + ECL L  +M
Sbjct: 273 FYPVVQSSILSMYSRCGSVGDSYASFSEVVHKDIISWTSIIGVYARFGFLKECLDLISKM 332

Query: 322 QASGIIPDDIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLL 381
           Q  G+  D I+IS ++LGFGNF  + +GKA H  ++++   +  I HNALLSMYCKFGLL
Sbjct: 333 QVDGLCADGILISSIVLGFGNFMSVCDGKAFHGLLIRRNFLLDQIVHNALLSMYCKFGLL 392

Query: 382 RMADKIFHSF-HKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSC 441
            +A+K+F    + + E WN M+ GY   G++E+ I+ FREM  LGIE DLNS VSVI SC
Sbjct: 393 SIAEKLFGIIPNCNKESWNIMVSGYCKNGQEEQSIELFREMQHLGIETDLNSFVSVIFSC 452

Query: 442 LPVGAVNIGRSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWN 501
             +GA+ IG S+HC  +K+ ++DN++IANSL+DMYGK+GNLT AWRIF++T Q+DI++WN
Sbjct: 453 SELGAIRIGHSLHCNIVKSYMVDNITIANSLIDMYGKNGNLTIAWRIFNQT-QRDIITWN 512

Query: 502 TLISSYKQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVL 532
           T++S+Y + GH SEAI LFD+MI     PN  T + VL
Sbjct: 513 TMMSAYTRCGHFSEAIALFDQMISGNLTPNLATLLTVL 549

[Close]

BLAST of Cp4.1LG16g01900 vs. TrEMBL
Match: B9H4S5_POPTR (Pentatricopeptide repeat-containing family protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s07530g PE=4 SV=2)

HSP 1 Score: 547.7 bits (1410), Expect = 1.9e-152
Identity = 283/520 (54.42%), Postives = 361/520 (69.42%), Query Frame = 1


Query: 27  FFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHPKDKF 86
           F S Q  T QSL + H+LIITTGN+NN F ++KL++ YA   +P  ST +F   + KD F
Sbjct: 38  FLSNQTQTLQSLHKSHALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKDTF 97

Query: 87  LWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLA 146
           LWNSII+SHFSNG+Y +AFDFY++MR  ++ PNQFTIPM+V+TCAEL+ L  G  IHGL 
Sbjct: 98  LWNSIIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLV 157

Query: 147 LKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKG 206
            K GLF  NSAVGSS +YMY+KCG  E ASLMF+EI V+DVV+WTAL+IGYV N++SEKG
Sbjct: 158 SKSGLFAENSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKG 217

Query: 207 LKCLFEMHR---NGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSI 266
           L+CL EM R   +G   N RT+ GGFQAC +L A++ GRCLHGLA+K+G  C +VV+SS+
Sbjct: 218 LECLCEMRRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSQVVQSSL 277

Query: 267 LSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDD 326
           LSMYS+CG+ EEA+  F ++  KD+ SWTS+I V ++ G M+ECL+LFW+MQ   + PD 
Sbjct: 278 LSMYSKCGNVEEAHNSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDG 337

Query: 327 IVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFHS 386
           IV+SC+LLGFGN   + EGKA H  I+++   +    +NALLSMYCKFG L         
Sbjct: 338 IVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTL--------- 397

Query: 387 FHKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIGR 446
                                EK  D        G+      LVSVISSC  +G +N+ R
Sbjct: 398 ------------------NPAEKLFD--------GVHEWSKDLVSVISSCSKLGLINLCR 457

Query: 447 SVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQSG 506
           SVHCY IKNS+ ++VSIANSL+DMYGK GNL+ AW++F RT Q+D+V+WNTLISSY  SG
Sbjct: 458 SVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRT-QRDVVTWNTLISSYTHSG 517

Query: 507 HPSEAIDLFDKMIKEKFNPNGVTCVIVLISTFDSLPYMEE 544
           H +EAI LFD+MI EK NPN  T VIVL S    LP +E+
Sbjct: 518 HYAEAITLFDEMISEKLNPNSATLVIVL-SACCHLPSLEK 520

[Close]

BLAST of Cp4.1LG16g01900 vs. TAIR10
Match: AT4G39952.1 (AT4G39952.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 478.0 bits (1229), Expect = 9.3e-135
Identity = 242/508 (47.64%), Postives = 339/508 (66.73%), Query Frame = 1


Query: 31  QNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHPKDKFLWNS 90
           Q+L+ +SL + ++LIIT G S N F A+KL++ YA +G+P  S+++F  V  +D FLWNS
Sbjct: 36  QSLSLESLRKHNALIITGGLSENIFVASKLISSYASYGKPNLSSRVFHLVTRRDIFLWNS 95

Query: 91  IIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLALKLG 150
           II++HFSNGDY ++  F+  M  S   P+ FT PMVVS CAEL+  + G  +HGL LK G
Sbjct: 96  IIKAHFSNGDYARSLCFFFSMLLSGQSPDHFTAPMVVSACAELLWFHVGTFVHGLVLKHG 155

Query: 151 LFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKGLKCL 210
            F  N+AVG+S +Y YSKCG  + A L+F+E+  +DVVAWTA+I G+VQN ESE GL  L
Sbjct: 156 GFDRNTAVGASFVYFYSKCGFLQDACLVFDEMPDRDVVAWTAIISGHVQNGESEGGLGYL 215

Query: 211 FEMHRNGC---TPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSILSMY 270
            +MH  G     PN RT+  GFQAC +L AL EGRCLHG A+K+G    + V+SS+ S Y
Sbjct: 216 CKMHSAGSDVDKPNPRTLECGFQACSNLGALKEGRCLHGFAVKNGLASSKFVQSSMFSFY 275

Query: 271 SRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDDIVIS 330
           S+ G+P EAY  F +L  +D+ SWTSIIA  ++ G M E   +FWEMQ  G+ PD +VIS
Sbjct: 276 SKSGNPSEAYLSFRELGDEDMFSWTSIIASLARSGDMEESFDMFWEMQNKGMHPDGVVIS 335

Query: 331 CMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIF--HSFH 390
           C++   G    + +GKA H ++++ C ++     N+LLSMYCKF LL +A+K+F   S  
Sbjct: 336 CLINELGKMMLVPQGKAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLFCRISEE 395

Query: 391 KSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIGRSV 450
            + E WNTM+ GY  M    KCI+ FR++  LGIE D  S  SVISSC  +GAV +G+S+
Sbjct: 396 GNKEAWNTMLKGYGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKSL 455

Query: 451 HCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQSGHP 510
           HCY +K S+   +S+ NSL+D+YGK G+LT AWR+F      ++++WN +I+SY      
Sbjct: 456 HCYVVKTSLDLTISVVNSLIDLYGKMGDLTVAWRMFCEA-DTNVITWNAMIASYVHCEQS 515

Query: 511 SEAIDLFDKMIKEKFNPNGVTCVIVLIS 534
            +AI LFD+M+ E F P+ +T V +L++
Sbjct: 516 EKAIALFDRMVSENFKPSSITLVTLLMA 542

[Close]

BLAST of Cp4.1LG16g01900 vs. TAIR10
Match: AT3G03580.1 (AT3G03580.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 252.7 bits (644), Expect = 6.4e-67
Identity = 152/505 (30.10%), Postives = 275/505 (54.46%), Query Frame = 1


Query: 29  SKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHP-KDKFL 88
           S  NL    L + H+L+I+ G  ++ FF+ KL+  Y+   +PA S  +FR V P K+ +L
Sbjct: 16  SSSNLN--ELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYL 75

Query: 89  WNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLAL 148
           WNSII++   NG + +A +FY ++R S   P+++T P V+  CA L     G  ++   L
Sbjct: 76  WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 135

Query: 149 KLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKGL 208
            +G F  +  VG++L+ MYS+ G    A  +F+E+ V+D+V+W +LI GY  +   E+ L
Sbjct: 136 DMG-FESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEAL 195

Query: 209 KCLFEMHRNGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSILSMY 268
           +   E+  +   P+  T+     A  +L  + +G+ LHG ALKSG     VV + +++MY
Sbjct: 196 EIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMY 255

Query: 269 SRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDDIVIS 328
            +   P +A R F +++ +D +S+ ++I  + KL ++ E + +F E       PD + +S
Sbjct: 256 LKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVS 315

Query: 329 CMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFHSFH-K 388
            +L   G+   +S  K ++ ++LK    +     N L+ +Y K G +  A  +F+S   K
Sbjct: 316 SVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECK 375

Query: 389 SSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIGRSVH 448
            +  WN++I GY   G+  + +  F+ M ++  + D  + + +IS    +  +  G+ +H
Sbjct: 376 DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLH 435

Query: 449 CYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQSGHPS 508
              IK+ I  ++S++N+L+DMY K G +  + +IF      D V+WNT+IS+  + G  +
Sbjct: 436 SNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFA 495

Query: 509 EAIDLFDKMIKEKFNPNGVTCVIVL 532
             + +  +M K +  P+  T ++ L
Sbjct: 496 TGLQVTTQMRKSEVVPDMATFLVTL 516

[Close]

BLAST of Cp4.1LG16g01900 vs. TAIR10
Match: AT2G03380.1 (AT2G03380.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 251.9 bits (642), Expect = 1.1e-66
Identity = 149/512 (29.10%), Postives = 262/512 (51.17%), Query Frame = 1


Query: 23  SSLFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHP 82
           S  F    +     SL Q H ++   G   +   ATKL++ Y   G    +  +F  +  
Sbjct: 45  SPCFLLLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPE 104

Query: 83  KDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNI 142
            D +LW  +++ +  N + ++    Y  +       +       +  C EL  L++G  I
Sbjct: 105 PDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKI 164

Query: 143 HGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNE 202
           H   +K+  F  ++ V + L+ MY+KCG  +SA  +FN+IT+++VV WT++I GYV+N+ 
Sbjct: 165 HCQLVKVPSF--DNVVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDL 224

Query: 203 SEKGLKCLFEMHRNGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSS 262
            E+GL     M  N    N  T G    AC  L AL +G+  HG  +KSG      + +S
Sbjct: 225 CEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTS 284

Query: 263 ILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPD 322
           +L MY +CG    A R F +    DL+ WT++I  ++  G ++E L LF +M+   I P+
Sbjct: 285 LLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPN 344

Query: 323 DIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFH 382
            + I+ +L G G  + +  G+++H   +K     + +  NAL+ MY K    R A  +F 
Sbjct: 345 CVTIASVLSGCGLIENLELGRSVHGLSIKVGIWDTNVA-NALVHMYAKCYQNRDAKYVFE 404

Query: 383 -SFHKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNI 442
               K    WN++I G+S  G   + +  F  M+   + P+  ++ S+ S+C  +G++ +
Sbjct: 405 MESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAV 464

Query: 443 GRSVHCYAIKNSII--DNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSY 502
           G S+H Y++K   +   +V +  +LLD Y K G+  +A  IF   ++K+ ++W+ +I  Y
Sbjct: 465 GSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGY 524

Query: 503 KQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVL 532
            + G    +++LF++M+K++  PN  T   +L
Sbjct: 525 GKQGDTIGSLELFEEMLKKQQKPNESTFTSIL 553

[Close]

BLAST of Cp4.1LG16g01900 vs. TAIR10
Match: AT4G18750.1 (AT4G18750.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-65
Identity = 154/533 (28.89%), Postives = 262/533 (49.16%), Query Frame = 1


Query: 1   NFANALPSLPHLAHFQIPTTLLSSLFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKL 60
           N  NA+  L     + I    L S+      + + +   +  + I   G   ++   +KL
Sbjct: 76  NLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKL 135

Query: 61  MAFYACHGQPAFSTQLFRFVHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQ 120
              Y   G    ++++F  V  +    WN ++     +GD+  +   + +M +S    + 
Sbjct: 136 SLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDS 195

Query: 121 FTIPMVVSTCAELMMLNHGMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFN 180
           +T   V  + + L  ++ G  +HG  LK G    NS VG+SL+  Y K    +SA  +F+
Sbjct: 196 YTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNS-VGNSLVAFYLKNQRVDSARKVFD 255

Query: 181 EITVKDVVAWTALIIGYVQNNESEKGLKCLFEMHRNGCTPNYRTIGGGFQACVDLEALVE 240
           E+T +DV++W ++I GYV N  +EKGL    +M  +G   +  TI   F  C D   +  
Sbjct: 256 EMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISL 315

Query: 241 GRCLHGLALKSGFLCFEVVKSSILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSK 300
           GR +H + +K+ F   +   +++L MYS+CG  + A   F ++  + ++S+TS+IA +++
Sbjct: 316 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 375

Query: 301 LGLMSECLHLFWEMQASGIIPDDIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGIT 360
            GL  E + LF EM+  GI PD   ++ +L     +  + EGK +H WI +         
Sbjct: 376 EGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFV 435

Query: 361 HNALLSMYCKFGLLRMADKIFHSFH-KSSEDWNTMILGYSNMGEKEKCIDFFR-EMHLLG 420
            NAL+ MY K G ++ A+ +F     K    WNT+I GYS      + +  F   +    
Sbjct: 436 SNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKR 495

Query: 421 IEPDLNSLVSVISSCLPVGAVNIGRSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAW 480
             PD  ++  V+ +C  + A + GR +H Y ++N    +  +ANSL+DMY K G L  A 
Sbjct: 496 FSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAH 555

Query: 481 RIFHRTQQKDIVSWNTLISSYKQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVL 532
            +F     KD+VSW  +I+ Y   G   EAI LF++M +     + ++ V +L
Sbjct: 556 MLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLL 607

[Close]

BLAST of Cp4.1LG16g01900 vs. TAIR10
Match: AT5G27110.1 (AT5G27110.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 243.4 bits (620), Expect = 3.9e-64
Identity = 175/670 (26.12%), Postives = 313/670 (46.72%), Query Frame = 1


Query: 21  LLSSLFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLM-AFYACHGQPAFSTQLFRF 80
           LLS L   +    + + +   H  I+T G   +      L+  ++ C    +       F
Sbjct: 6   LLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVFENF 65

Query: 81  VHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEM-RASSSLPNQFTIPMVVSTCAELMMLNH 140
               D ++WNS++  +  N  +    + +  +   S  +P+ FT P V+     L     
Sbjct: 66  DIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREFL 125

Query: 141 GMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYV 200
           G  IH L +K G +V +  V SSL+ MY+K    E++  +F+E+  +DV +W  +I  + 
Sbjct: 126 GRMIHTLVVKSG-YVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFY 185

Query: 201 QNNESEKGLKCLFEMHRNGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEV 260
           Q+ E+EK L+    M  +G  PN  ++     AC  L  L  G+ +H   +K GF   E 
Sbjct: 186 QSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEY 245

Query: 261 VKSSILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASG 320
           V S+++ MY +C   E A   F K+ +K L++W S+I  +   G    C+ +   M   G
Sbjct: 246 VNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEG 305

Query: 321 IIPDDIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMAD 380
             P    ++ +L+       +  GK +H ++++         + +L+ +Y K G   +A+
Sbjct: 306 TRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAE 365

Query: 381 KIFHSFHKS-SEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVG 440
            +F    K  +E WN MI  Y ++G   K ++ + +M  +G++PD+ +  SV+ +C  + 
Sbjct: 366 TVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLA 425

Query: 441 AVNIGRSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLIS 500
           A+  G+ +H    ++ +  +  + ++LLDMY K GN   A+RIF+   +KD+VSW  +IS
Sbjct: 426 ALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMIS 485

Query: 501 SYKQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVLIS-----------TFDSLPYMEERIE 560
           +Y   G P EA+  FD+M K    P+GVT + VL +            F S    +  IE
Sbjct: 486 AYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIE 545

Query: 561 ELTEK-TFATDPNGLHTLYVKSFEIFVTNPKEVISDDVVYATFELTRIDIE-----KVRR 620
            + E  +   D  G     ++++EI    P+   + +++   F    + +E     ++ R
Sbjct: 546 PIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIAR 605

Query: 621 RVVATSSSTPRRLTTFMLAFSLVSTCILLYGVFSMAESRNGDGGVELGIALPP-----QA 666
            +V    + P   +T+M+ F+L ++     G    A  R      E+G+   P     + 
Sbjct: 606 LLV---ENYPDDASTYMVLFNLYAS-----GESWDAARRVRLKMKEMGLRKKPGCSWIEM 665

[Close]

BLAST of Cp4.1LG16g01900 vs. NCBI nr
Match: gi|659118561|ref|XP_008459184.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Cucumis melo])

HSP 1 Score: 884.0 bits (2283), Expect = 1.6e-253
Identity = 442/574 (77.00%), Postives = 491/574 (85.54%), Query Frame = 1


Query: 2   FANALPSLPHLAHFQIPTTLLSSLFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLM 61
           F++   SLP   H+  P   L S  FFSK +LTFQSLLQFHSLIITTGNS+N FFATKLM
Sbjct: 70  FSSTFTSLPD-PHY--PNNCLHS--FFSKPSLTFQSLLQFHSLIITTGNSDNVFFATKLM 129

Query: 62  AFYACHGQPAFSTQLFRFVHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQF 121
           AFYA H QPAFST LFR +H KD FLWNSIIQSHFSNGDY +AFDFYL+MRASSSLPNQF
Sbjct: 130 AFYASHRQPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQF 189

Query: 122 TIPMVVSTCAELMMLNHGMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNE 181
           T+PMVVSTCAELMM NHGMNIHGL  KLGLFV NSA+GSS IYMYSKCG+ ESASLMF+E
Sbjct: 190 TVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVSNSAIGSSFIYMYSKCGHVESASLMFSE 249

Query: 182 ITVKDVVAWTALIIGYVQNNESEKGLKCLFEMHRNGCTPNYRTIGGGFQACVDLEALVEG 241
           ITVKDVVAWTALI+GYVQNNES +GLKCLFEMHR G TPNY+TIG GFQACVDL+ALVEG
Sbjct: 250 ITVKDVVAWTALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEG 309

Query: 242 RCLHGLALKSGFLCFEVVKSSILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKL 301
           +CLHGLALK+GFLCF+VVKS+ILSMYSRCGSPEEAYRCF KL+QKDLISWTSIIAVHSK 
Sbjct: 310 KCLHGLALKNGFLCFKVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKF 369

Query: 302 GLMSECLHLFWEMQASGIIPDDIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITH 361
           GLMSECLHLFWEMQ S IIPD+IVISCML+GFGN  RI EGKA HAWILKQCCAM+GITH
Sbjct: 370 GLMSECLHLFWEMQDSEIIPDEIVISCMLMGFGNSGRIFEGKAFHAWILKQCCAMNGITH 429

Query: 362 NALLSMYCKFGLLRMADKIFHSFHKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEP 421
           NALLSMYCKFG L  A+KIFHSFHKSSEDW+TMILGYSNMG+KE CI F REM LLG EP
Sbjct: 430 NALLSMYCKFGHLGTANKIFHSFHKSSEDWSTMILGYSNMGQKENCISFLREMLLLGREP 489

Query: 422 DLNSLVSVISSCLPVGAVNIGRSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIF 481
           DLNSLVSVISSC  VGA+NIGRS+HCYAIKNSII+NVSIANSL+DMYGKSG++TA WRIF
Sbjct: 490 DLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIENVSIANSLMDMYGKSGHVTATWRIF 549

Query: 482 HRTQQKDIVSWNTLISSYKQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVL-----ISTFD 541
           HRTQQ+D++SWNTLISSYKQSG+ +EAI LFDKM+KEK  PN VTCVIVL     +++ D
Sbjct: 550 HRTQQRDVISWNTLISSYKQSGNLAEAIILFDKMVKEKVYPNKVTCVIVLSVCAHLASLD 609

Query: 542 SLPYMEERIEELTEKTFATDPNGLHTLYVKSFEI 571
               + + I+E   ++  T    L  +Y K  E+
Sbjct: 610 KGEKIHQYIKENGFESNITIRTALIDMYAKCGEL 638

[Close]

BLAST of Cp4.1LG16g01900 vs. NCBI nr
Match: gi|449460752|ref|XP_004148109.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Cucumis sativus])

HSP 1 Score: 882.1 bits (2278), Expect = 6.1e-253
Identity = 438/564 (77.66%), Postives = 485/564 (85.99%), Query Frame = 1


Query: 12  LAHFQIPTTLLSSLFFFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPA 71
           L+    P   L S  FFSK NLTFQSLLQFHSLIITTGNSNN FFATKLMAFYA H +PA
Sbjct: 32  LSDSHYPNNCLHS--FFSKPNLTFQSLLQFHSLIITTGNSNNVFFATKLMAFYAYHRKPA 91

Query: 72  FSTQLFRFVHPKDKFLWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCA 131
           FST LFR +H KD FLWNSIIQSHFSNGDY +AFDFYL+MRASSSLPNQFT+PMVVSTCA
Sbjct: 92  FSTHLFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCA 151

Query: 132 ELMMLNHGMNIHGLALKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWT 191
           ELMM NHGMNIHGL  KLGLFVGNSA+GSS IYMYSKCG+ ESAS+MF+EITVKDVV WT
Sbjct: 152 ELMMFNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWT 211

Query: 192 ALIIGYVQNNESEKGLKCLFEMHRNGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKS 251
           ALI+GYVQNNES +GLKCLFEMHR G TPNY+TIG GFQACVDL+ALVEG+CLHGLALK+
Sbjct: 212 ALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKN 271

Query: 252 GFLCFEVVKSSILSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLF 311
           GFLCFEVVKS+ILSMYSRCGSPEEAYRCF KL+QKDLISWTSIIAVHSK GLMSECLHLF
Sbjct: 272 GFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLF 331

Query: 312 WEMQASGIIPDDIVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKF 371
           WEMQAS IIPD+IVISCML+GFGN DRI EGKA HA ILKQCCA+SGITHNALLSMYCKF
Sbjct: 332 WEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKF 391

Query: 372 GLLRMADKIFHSFHKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVIS 431
           G L  A+KIFHSFHKSSEDW+TMILGYSNMG+KEKCI F REM LLG EPDLNSLVSVIS
Sbjct: 392 GHLGTANKIFHSFHKSSEDWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVIS 451

Query: 432 SCLPVGAVNIGRSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVS 491
           SC  VGA+NIGRS+HCYAIKNSII+NVS+ANSL+DMYGKSG++TA WRIFHRT Q+D++S
Sbjct: 452 SCSQVGAINIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVIS 511

Query: 492 WNTLISSYKQSGHPSEAIDLFDKMIKEKFNPNGVTCVIVL-----ISTFDSLPYMEERIE 551
           WNTLISSYKQSG  +EAI LFDKM+KEK  PN VTC+IVL     +++ D    + + I+
Sbjct: 512 WNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIK 571

Query: 552 ELTEKTFATDPNGLHTLYVKSFEI 571
           E   ++  T    L  +Y K  E+
Sbjct: 572 ENGFESNITIRTALIDMYAKCGEL 593

[Close]

BLAST of Cp4.1LG16g01900 vs. NCBI nr
Match: gi|743861097|ref|XP_011031040.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Populus euphratica])

HSP 1 Score: 614.4 bits (1583), Expect = 2.4e-172
Identity = 305/521 (58.54%), Postives = 387/521 (74.28%), Query Frame = 1


Query: 27  FFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHPKDKF 86
           F S Q  T QSL + H+LIITTGN+NN F ++KL++ YA   +P  ST +F   + KD F
Sbjct: 37  FLSNQAQTLQSLHKSHALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNKKDTF 96

Query: 87  LWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLA 146
           LWNSII+SHFSNG+Y +AFDFY++MR  ++ PNQFTIPM+V+TCAEL+ L  G  IHGL 
Sbjct: 97  LWNSIIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELLWLEEGKYIHGLV 156

Query: 147 LKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKG 206
            K G F  NSAVGSS +YMY+KCG  E ASLMF+EI V+DVV+WTAL+IGYV N++SEKG
Sbjct: 157 SKSGFFAENSAVGSSFVYMYAKCGVMEDASLMFDEIVVRDVVSWTALVIGYVHNDDSEKG 216

Query: 207 LKCLFEMHR---NGCTPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSI 266
           L+CL EMHR   +G   N RT+ GGFQAC +L A++ GRCLHGLA+K+G  C   V+SS+
Sbjct: 217 LECLCEMHRIGGDGEKVNSRTLEGGFQACGNLGAMIAGRCLHGLAVKTGLGCSHAVQSSL 276

Query: 267 LSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDD 326
           LSMYS+CG+ EEA++ F ++  KD+ SWTS+I V ++ G M+ECL+LFW+MQ   + PD 
Sbjct: 277 LSMYSKCGNVEEAHKSFCQVVDKDVFSWTSVIGVCARFGFMNECLNLFWDMQVDDVYPDG 336

Query: 327 IVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFHS 386
           IV+SC+LLGFGN   + EGKA H  I+++   +    +NALLSMYCKFG L  A+K+   
Sbjct: 337 IVVSCILLGFGNSMMVREGKAFHGLIVRRNYVLDDTVNNALLSMYCKFGTLNPAEKLLDG 396

Query: 387 FHK-SSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIG 446
            H+ S E WNTM+ GY  MG + KCI+ FREM  LGIE D NSLVSVISSC  +G +N  
Sbjct: 397 VHEWSKESWNTMVFGYGKMGIEGKCIELFREMRDLGIEADSNSLVSVISSCSKLGLINPC 456

Query: 447 RSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQS 506
           RSVHCY IKNS+ ++VSIANSL+DMYGK GNL+ AW++F RT Q+D+V+WNTLISSY  S
Sbjct: 457 RSVHCYIIKNSVDEDVSIANSLIDMYGKGGNLSIAWKMFCRT-QRDVVTWNTLISSYTHS 516

Query: 507 GHPSEAIDLFDKMIKEKFNPNGVTCVIVLISTFDSLPYMEE 544
           GH +EAI LFD+MI EK NPN  T VIVL S    LP +E+
Sbjct: 517 GHHAEAITLFDEMISEKLNPNSATLVIVL-SACGHLPSLEK 555

[Close]

BLAST of Cp4.1LG16g01900 vs. NCBI nr
Match: gi|658021995|ref|XP_008346407.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g39952, mitochondrial-like [Malus domestica])

HSP 1 Score: 611.3 bits (1575), Expect = 2.0e-171
Identity = 312/524 (59.54%), Postives = 381/524 (72.71%), Query Frame = 1


Query: 27  FFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHPKDKF 86
           F S Q  TFQ L Q H+LIIT+ NSNN F   KL++ YA   +P  ST++F  V PKD F
Sbjct: 39  FLSNQIPTFQHLSQSHALIITSANSNNIFICAKLISLYASLSKPTSSTKVFASVSPKDTF 98

Query: 87  LWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLA 146
           LWNSII++HFSNG Y +A  F+ +MRAS   PNQFT+PMVVS+CAELM+L+HG N+HGL 
Sbjct: 99  LWNSIIKTHFSNGGYSKALVFFFQMRASGFAPNQFTLPMVVSSCAELMVLDHGNNVHGLG 158

Query: 147 LKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKG 206
            KLGLF GNSAVGSS +YMYSKCG  E AS+MF+EITV+DVV WTALIIGYVQN+ESEKG
Sbjct: 159 KKLGLFAGNSAVGSSFVYMYSKCGRMEDASJMFDEITVRDVVCWTALIIGYVQNDESEKG 218

Query: 207 LKCLFEMHRNGC---TPNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSI 266
           L+CL EMHR G     PN+RT+  G QAC DL ALVEGRCLHG  +K G  C   VKS +
Sbjct: 219 LECLCEMHRIGGIGERPNFRTLEVGLQACGDLGALVEGRCLHGFVVKRGIGCSGAVKSLL 278

Query: 267 LSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDD 326
           LSMYSRCG PEE+Y  F  +E KD+ISWTS+I V+++ GLM  CL LFWEMQ S I PD+
Sbjct: 279 LSMYSRCGRPEESYLSFCDIENKDVISWTSVIGVYARSGLMDGCLSLFWEMQDSDIFPDE 338

Query: 327 IVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFHS 386
           IV+SCML GF N   I+EGKA    + +Q  A S + H+ LLSMYCKF LL +A+K+F  
Sbjct: 339 IVVSCMLSGFRNSTNINEGKAFLGLVTRQNYASSQVVHSELLSMYCKFELLTLAEKLFSG 398

Query: 387 F-HKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIG 446
             H++ E  NTMI GY  +G + KCI+ FR+M   GIE D NSLVSV+SSC  +G +++G
Sbjct: 399 MQHQNKESCNTMIYGYGKLGLRTKCIELFRKMRHQGIEADSNSLVSVVSSCFQMGTIHLG 458

Query: 447 RSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQS 506
           +S+HC+ IK  + +NVS+ANSL+DMYGKSG LT A RIF  T QKDI++WN+LISSY  +
Sbjct: 459 QSLHCFIIKVCMDENVSVANSLIDMYGKSGYLTIARRIFSVT-QKDIITWNSLISSYTHN 518

Query: 507 GHPSEAIDLFDKMIKEKFNPNGVTCVIVLISTFDSLPYMEERIE 547
           GH  EAIDL+ KMI E F PN  T V VL S    L  +EE I+
Sbjct: 519 GHSFEAIDLYHKMIAENFMPNSATLVTVL-SACSHLASLEEGIK 560

[Close]

BLAST of Cp4.1LG16g01900 vs. NCBI nr
Match: gi|645219123|ref|XP_008234126.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial [Prunus mume])

HSP 1 Score: 606.3 bits (1562), Expect = 6.4e-170
Identity = 304/509 (59.72%), Postives = 376/509 (73.87%), Query Frame = 1


Query: 27  FFSKQNLTFQSLLQFHSLIITTGNSNNAFFATKLMAFYACHGQPAFSTQLFRFVHPKDKF 86
           F S QN   Q L Q H+LI+T+GNSNN F A KL++ YA   +P FST++F  V PKD F
Sbjct: 37  FLSNQNSNLQYLSQSHALIVTSGNSNNIFIAAKLISLYASLSKPTFSTKVFGSVCPKDTF 96

Query: 87  LWNSIIQSHFSNGDYLQAFDFYLEMRASSSLPNQFTIPMVVSTCAELMMLNHGMNIHGLA 146
           LWNSII++HFSNGDY +A DF+ +MRA    P QFT+PMVV++CAELM+L HG N+HGLA
Sbjct: 97  LWNSIIKTHFSNGDYSKALDFFFQMRALGFAPTQFTLPMVVASCAELMLLEHGNNVHGLA 156

Query: 147 LKLGLFVGNSAVGSSLIYMYSKCGNAESASLMFNEITVKDVVAWTALIIGYVQNNESEKG 206
            KLG+F GNSAVGSS +YMYSKCG  E A  MF E TV+DVV WTALIIGYVQN+ESEKG
Sbjct: 157 SKLGIFSGNSAVGSSFVYMYSKCGRMEDAYFMFEETTVRDVVCWTALIIGYVQNDESEKG 216

Query: 207 LKCLFEMHRNGCT---PNYRTIGGGFQACVDLEALVEGRCLHGLALKSGFLCFEVVKSSI 266
           L+CL EMHR G +   PN+RT+  G QAC DL  LVEG+CLHG  +KSG  C E VKS +
Sbjct: 217 LECLCEMHRVGGSDERPNFRTLEVGLQACGDLGTLVEGKCLHGFVVKSGIGCSEAVKSLL 276

Query: 267 LSMYSRCGSPEEAYRCFFKLEQKDLISWTSIIAVHSKLGLMSECLHLFWEMQASGIIPDD 326
           LSMYSRCG+P E+Y  F +++ KDL+SWTS+I V+++ GLM ECL LF  MQ S I PD 
Sbjct: 277 LSMYSRCGAPGESYLSFCEIKDKDLLSWTSVIGVYARSGLMDECLSLFQGMQVSDIFPDK 336

Query: 327 IVISCMLLGFGNFDRISEGKALHAWILKQCCAMSGITHNALLSMYCKFGLLRMADKIFHS 386
           IV++CML GF N   I+EGKA    ++++  A+S + H+ALLSMYCKF LL  A+K+F  
Sbjct: 337 IVVNCMLSGFKNSTTINEGKAFLGSVIRKNYALSQMVHSALLSMYCKFELLTRAEKLFFG 396

Query: 387 F-HKSSEDWNTMILGYSNMGEKEKCIDFFREMHLLGIEPDLNSLVSVISSCLPVGAVNIG 446
             H++ E  NTMI GY+ MG   KCI+ FR+M  LGIE D NSLVSVI SC  +GA+++G
Sbjct: 397 MQHQNKESCNTMICGYAKMGLHVKCIELFRKMQHLGIEADSNSLVSVICSCFQLGAIHLG 456

Query: 447 RSVHCYAIKNSIIDNVSIANSLLDMYGKSGNLTAAWRIFHRTQQKDIVSWNTLISSYKQS 506
           RS+HCY IK S+ +N+S+ANSLLDMYGKSG+L  A RIF  T Q+DI++WNT+ISSY  +
Sbjct: 457 RSLHCYLIKVSMDENISVANSLLDMYGKSGHLNIARRIFSGT-QRDIITWNTMISSYTHA 516

Query: 507 GHPSEAIDLFDKMIKEKFNPNGVTCVIVL 532
           GH +EAI LF KMI   F PN  T V VL
Sbjct: 517 GHSAEAIALFKKMIAVNFKPNSATLVTVL 544

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g01900 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP359_ARATH	1.7e-133	47.64	Pentatricopeptide repeat-containing protein At4g39952, mitochondrial OS=Arabidop...	[more]
PP210_ARATH	1.1e-65	30.10	Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN...	[more]
PP146_ARATH	1.9e-65	29.10	Pentatricopeptide repeat-containing protein At2g03380, mitochondrial OS=Arabidop...	[more]
PP320_ARATH	2.1e-64	28.89	Pentatricopeptide repeat-containing protein DOT4, chloroplastic OS=Arabidopsis t...	[more]
PP398_ARATH	6.9e-63	26.12	Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN...	[more]

BLAST of Cp4.1LG16g01900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRH3_CUCSA	4.2e-253	77.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G439160 PE=4 SV=1	[more]
W9QNE1_9ROSA	2.6e-165	57.56	Uncharacterized protein OS=Morus notabilis GN=L484_022141 PE=4 SV=1	[more]
M5W549_PRUPE	1.4e-155	56.19	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021864mg PE=4 SV=1	[more]
A0A061DJE7_THECC	7.0e-155	54.83	Pentatricopeptide repeat (PPR) superfamily protein, putative OS=Theobroma cacao ...	[more]
B9H4S5_POPTR	1.9e-152	54.42	Pentatricopeptide repeat-containing family protein (Fragment) OS=Populus trichoc...	[more]

BLAST of Cp4.1LG16g01900 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39952.1	9.3e-135	47.64	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G03580.1	6.4e-67	30.10	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G03380.1	1.1e-66	29.10	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G18750.1	1.2e-65	28.89	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G27110.1	3.9e-64	26.12	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cp4.1LG16g01900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118561\|ref\|XP_008459184.1\|	1.6e-253	77.00	PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial ...	[more]
gi\|449460752\|ref\|XP_004148109.1\|	6.1e-253	77.66	PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial ...	[more]
gi\|743861097\|ref\|XP_011031040.1\|	2.4e-172	58.54	PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial ...	[more]
gi\|658021995\|ref\|XP_008346407.1\|	2.0e-171	59.54	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g...	[more]
gi\|645219123\|ref\|XP_008234126.1\|	6.4e-170	59.72	PREDICTED: pentatricopeptide repeat-containing protein At4g39952, mitochondrial ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG16g01900.1	Cp4.1LG16g01900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 391..419 score: 7.8E-5coord: 261..287 score: 0.037coord: 359..384 score: 0.0017coord: 289..319 score: 1.9E-5coord: 87..113 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 487..531 score: 3.0E-11coord: 185..224 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 391..422 score: 2.9E-6coord: 359..387 score: 0.0026coord: 289..322 score: 1.7E-4coord: 490..523 score: 1.2E-8coord: 188..221 score: 3.6E-7coord: 87..119 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 84..118 score: 9.438coord: 457..487 score: 8.057coord: 256..286 score: 6.423coord: 287..321 score: 10.6coord: 387..421 score: 10.545coord: 322..356 score: 5.174coord: 488..522 score: 12.814coord: 155..185 score: 6.127coord: 186..220 score: 10.709coord: 357..386 score: 5
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 458..518 score: 4.1E-8coord: 274..304 score: 4.1E-8coord: 390..423 score: 4.1E-8coord: 81..104 score: 4.
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 358..531 score: 6.6E-178coord: 4..322 score: 6.6E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG16g01900	Cucsa.318660	Cucumber (Gy14) v1	cgycpeB0837
Cp4.1LG16g01900	CmaCh20G009120	Cucurbita maxima (Rimu)	cmacpeB565
Cp4.1LG16g01900	CmoCh20G009190	Cucurbita moschata (Rifu)	cmocpeB517
Cp4.1LG16g01900	Cla013005	Watermelon (97103) v1	cpewmB274
Cp4.1LG16g01900	Csa2G439160	Cucumber (Chinese Long) v2	cpecuB270
Cp4.1LG16g01900	CSPI02G27820	Wild cucumber (PI 183967)	cpecpiB272
Cp4.1LG16g01900	Lsi10G002690	Bottle gourd (USVL1VR-Ls)	cpelsiB220
Cp4.1LG16g01900	MELO3C034624.2	Melon (DHL92) v3.6.1	cpemedB295
Cp4.1LG16g01900	CsaV3_2G036460	Cucumber (Chinese Long) v3	cpecucB0337
Cp4.1LG16g01900	Bhi10G001320	Wax gourd	cpewgoB0358
Cp4.1LG16g01900	CsGy2G027260	Cucumber (Gy14) v2	cgybcpeB196
Cp4.1LG16g01900	Carg27483	Silver-seed gourd	carcpeB0770

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG16g01900	Melon (DHL92) v3.5.1	cpemeB250
Cp4.1LG16g01900	Silver-seed gourd	carcpeB1468
Cp4.1LG16g01900	Cucurbita pepo (Zucchini)	cpecpeB309
Cp4.1LG16g01900	Cucurbita maxima (Rimu)	cmacpeB626
Cp4.1LG16g01900	Cucurbita moschata (Rifu)	cmocpeB575
Cp4.1LG16g01900	Watermelon (Charleston Gray)	cpewcgB246