Cp4.1LG12g11150 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g11150
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSterile alpha motif domain-containing family protein
LocationCp4.1LG12 : 9035690 .. 9037534 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGGTGATACATCAGTGGATGACTTCCTACAGTCCTTGGGCCTTGAAAAATATTCCATTACGTTTCAAGCAGAGGAAGTATGAAAATCTTATGTTTCAAGTATAAAATCCATTTTTGAAGATTTCAGCCGGACTTCCCTGAACTAATTAGAACTTTGAACCTCTTTCATATAGGTTGATATGACGGCGCTTGTACACATGGGAGATGAAGATCTCAAGGCTTTAGGAGTGCCAATGGTAAACTTACAAGAGCATGATTTGATTTCATTTCAAGCTTTTAGTATTATCATTATTATTGTGTGCATTGTATGTTTTCAGCCATCTTATATCTTTACTTGTGTACTTGAGTAGCTGACTTGAACTCACTATTTAGTATTTAGCTATTAACATTTAAGAAGTGGTTTCAAATGCTTTCTTGTCTTAAGTTGATGAAGCTGTGAGGTATTTATGTTTCTTAAGCAGCTAGTTCTCTGAATTCTAATATTTGAACCTATCACTACTAGGAGTAATTGCAGTATGTGGCTTCTCAGATAAGAAAGTATTTGGTCAGTTATATTTAATCAAAAGTAATAGCTAAGAGAGAGGTTATATGTAGACTCAACCAATGCAAGCTAGCTCTCTCACCTCATTAATTGTTCTCCAATATTGAGGTGCATTTTATGTTATAGAGCTTTACTAAAAGATTCGGGTGAAACTGAGTTGGCTAATTGTGAGATCCCATATTGGTTGGAGAGGGGAACGGAGCATTCTTTACAAGGGTGTGAAAACCTCTCTCTAACAGACGCATTTTAAAACCTAAAACCTTGAGGGGAAGCTTGGAAGGGAAAGCCCAAAGAAGATAATATCTGCTAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACACCGGGCAGTGTGCTAGTGAGGACACTAGGCCCCCAAGGGGAGTGGATTGTGAGATCCCACATTGGTTGAAGAGGGGAACAAAACATTTTTTTATAAGGGTGTGGAAACCTCTCCCTAACAAATACGTTATAAAACCTTGAGGGGAAGCCTAAAGATATAATATGTTACACTAATACACAAATAGGCAACAAACTAACATCGCTCTTAGAAGTTTGAAACTTGTTTAACTTCAAGATCTTTCATCCAAACTGTGCAGAAGAATTGTGGAAGAATCTTTTAAGTTTTCTGTACCGTTTCTTGTCTTAAACAAGGCAGTTCTCTGTTATTGGTTGGATAATAGTCATGTACTCTTGATAGGAAGATATAGCAAGCAAGAGACGTCTATATGCCAAATTTTGATAACCCTTCATGTGAGAATAACTTAAAAACAGAAAAATACTGTCAACATTCTTCAAGACTATACTAGACTCAATCTACGACGTGTTTGCCATCATTTTGTTCGCTCGCTCGCTCGTTTCTTGTTTTAATGCATGGAAGCAAGAAGGTTGTACTCAAGTTATGAACTGTGCTTTCAGGGGCCAAGAAAGAAGATCCTTTTGGCATTGGAAACAAGAGTCTGAATGATGGAAAGCGGGTAGAGGAAGTTCCTGTTCGCAGATGTTTTATTTTATACCAGCAACTAGACTACTGTGAACAAGTAAGCCTGTCATTCTTCCGCCACCCGTTCTTGCTTCCTTTTCCCCTTTTTATTCCATTTTTGCACTGCTCAGCTTACTGTAAGGATTCATGTTCATCGTTAAGGACCTCAAAATGTTTAGCTATGGATGAAAATATGGGATTTAGTACATGTGGGTATGCCTTACCTGACCTCAAAATCTTATATTCATACTTCAATAGGAATATATATATTAAAATAGCGATGAAGAAATTTGAAAATATTGGTTTATTA

mRNA sequence

ATGCAGGGTGATACATCAGTGGATGACTTCCTACAGTCCTTGGGCCTTGAAAAATATTCCATTACGTTTCAAGCAGAGGAAGTTGATATGACGGCGCTTGTACACATGGGAGATGAAGATCTCAAGGCTTTAGGAGTGCCAATGGTAAACTTACAAGAGCATGATTTGATTTCATTTCAAGCTTTTAGGGCCAAGAAAGAAGATCCTTTTGGCATTGGAAACAAGAGTCTGAATGATGGAAAGCGGGTAGAGGAAGTTCCTGTTCGCAGATGTTTTATTTTATACCAGCAACTAGACTACTGTGAACAAGTAAGCCTGTCATTCTTCCGCCACCCGTTCTTGCTTCCTTTTCCCCTTTTTATTCCATTTTTGCACTGCTCAGCTTACTGTAAGGATTCATGTTCATCGTTAAGGACCTCAAAATGTTTAGCTATGGATGAAAATATGGGATTTAGTACATGTGGGTATGCCTTACCTGACCTCAAAATCTTATATTCATACTTCAATAGGAATATATATATTAAAATAGCGATGAAGAAATTTGAAAATATTGGTTTATTA

Coding sequence (CDS)

ATGCAGGGTGATACATCAGTGGATGACTTCCTACAGTCCTTGGGCCTTGAAAAATATTCCATTACGTTTCAAGCAGAGGAAGTTGATATGACGGCGCTTGTACACATGGGAGATGAAGATCTCAAGGCTTTAGGAGTGCCAATGGTAAACTTACAAGAGCATGATTTGATTTCATTTCAAGCTTTTAGGGCCAAGAAAGAAGATCCTTTTGGCATTGGAAACAAGAGTCTGAATGATGGAAAGCGGGTAGAGGAAGTTCCTGTTCGCAGATGTTTTATTTTATACCAGCAACTAGACTACTGTGAACAAGTAAGCCTGTCATTCTTCCGCCACCCGTTCTTGCTTCCTTTTCCCCTTTTTATTCCATTTTTGCACTGCTCAGCTTACTGTAAGGATTCATGTTCATCGTTAAGGACCTCAAAATGTTTAGCTATGGATGAAAATATGGGATTTAGTACATGTGGGTATGCCTTACCTGACCTCAAAATCTTATATTCATACTTCAATAGGAATATATATATTAAAATAGCGATGAAGAAATTTGAAAATATTGGTTTATTA

Protein sequence

MQGDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMVNLQEHDLISFQAFRAKKEDPFGIGNKSLNDGKRVEEVPVRRCFILYQQLDYCEQVSLSFFRHPFLLPFPLFIPFLHCSAYCKDSCSSLRTSKCLAMDENMGFSTCGYALPDLKILYSYFNRNIYIKIAMKKFENIGLL
Homology
[Close]
BLAST of Cp4.1LG12g11150 vs. TrEMBL
Match: A0A0A0K9W5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G341210 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-15
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 2   QGDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPM 49
           + DTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGD+DLKALGVPM
Sbjct: 145 KSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDDDLKALGVPM 191

[Close]
BLAST of Cp4.1LG12g11150 vs. TrEMBL
Match: W9RW23_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007030 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-14
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1 

Query: 2   QGDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMVNLQEHDLISFQA 61
           +  ++VDDFLQSLGLEKYSITFQAEEVDMTAL HM DEDLKA+G+PM+   + + I  ++
Sbjct: 133 KASSTVDDFLQSLGLEKYSITFQAEEVDMTALAHMTDEDLKAIGIPMLIHHDGEKIKTKS 192

Query: 62  FRAKKEDPFG 72
               K DP G
Sbjct: 193 KSLMKADPNG 202

[Close]
BLAST of Cp4.1LG12g11150 vs. TrEMBL
Match: A9P9C7_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 4   DTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMVN 51
           D+SVD FLQSLGLEKY ITFQAEEVDMTALVHM DEDLKALG+PMVN
Sbjct: 142 DSSVDVFLQSLGLEKYLITFQAEEVDMTALVHMTDEDLKALGIPMVN 188

[Close]
BLAST of Cp4.1LG12g11150 vs. TrEMBL
Match: U5FVW9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s18960g PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 4   DTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMVN 51
           D+SVD FLQSLGLEKY ITFQAEEVDMTALVHM DEDLKALG+PMVN
Sbjct: 142 DSSVDVFLQSLGLEKYLITFQAEEVDMTALVHMTDEDLKALGIPMVN 188

[Close]
BLAST of Cp4.1LG12g11150 vs. TrEMBL
Match: A5AVU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011025 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 2   QGDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMV 50
           Q DTSVD FLQSLGLEKY ITFQAEEVDMTAL+HM DEDLKA+G+PM+
Sbjct: 193 QADTSVDGFLQSLGLEKYLITFQAEEVDMTALIHMTDEDLKAMGIPML 240

[Close]
BLAST of Cp4.1LG12g11150 vs. TAIR10
Match: AT3G07170.1 (AT3G07170.1 Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-12
Identity = 33/47 (70.21%), Postives = 39/47 (82.98%), Query Frame = 1 

Query: 2   QGDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPM 49
           Q D+SVD FL+SLGLEKYS  FQ EEVDM AL+HM D+DLKA+ +PM
Sbjct: 143 QADSSVDSFLESLGLEKYSTAFQVEEVDMDALMHMTDDDLKAMLIPM 189

[Close]
BLAST of Cp4.1LG12g11150 vs. TAIR10
Match: AT5G48680.1 (AT5G48680.1 Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1 

Query: 2   QGDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPM 49
           Q D SVD FL+SLGLEKYS  FQ EEVDM AL HM D+DLKAL +PM
Sbjct: 145 QNDASVDSFLESLGLEKYSTAFQVEEVDMDALRHMTDDDLKALLIPM 191

[Close]
BLAST of Cp4.1LG12g11150 vs. TAIR10
Match: AT1G70180.2 (AT1G70180.2 Sterile alpha motif (SAM) domain-containing protein)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-07
Identity = 25/43 (58.14%), Postives = 31/43 (72.09%), Query Frame = 1 

Query: 6   SVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPM 49
           SVD FL S+GL KYS+ F+ EEVDMT +  M + DLK L +PM
Sbjct: 402 SVDGFLNSIGLGKYSLAFKREEVDMTTIKQMKESDLKDLIIPM 444

[Close]
BLAST of Cp4.1LG12g11150 vs. NCBI nr
Match: gi|449443732|ref|XP_004139631.1| (PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-15
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 2   QGDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPM 49
           + DTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGD+DLKALGVPM
Sbjct: 145 KSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDDDLKALGVPM 191

[Close]
BLAST of Cp4.1LG12g11150 vs. NCBI nr
Match: gi|659116333|ref|XP_008458022.1| (PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-15
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 

Query: 2   QGDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPM 49
           + DTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGD+DLKALGVPM
Sbjct: 145 KSDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDDDLKALGVPM 191

[Close]
BLAST of Cp4.1LG12g11150 vs. NCBI nr
Match: gi|568885277|ref|XP_006495217.1| (PREDICTED: uncharacterized protein LOC102624211 [Citrus sinensis])

HSP 1 Score: 89.7 bits (221), Expect = 5.7e-15
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1 

Query: 2   QGDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMVNLQEH 55
           + +TSVD FL+SLGLEKYSITFQAEEVDMTAL+HM DEDLKALG+PMVN Q H
Sbjct: 147 KAETSVDGFLRSLGLEKYSITFQAEEVDMTALLHMTDEDLKALGIPMVNSQTH 199

[Close]
BLAST of Cp4.1LG12g11150 vs. NCBI nr
Match: gi|703128808|ref|XP_010104190.1| (hypothetical protein L484_007030 [Morus notabilis])

HSP 1 Score: 87.0 bits (214), Expect = 3.7e-14
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1 

Query: 2   QGDTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMVNLQEHDLISFQA 61
           +  ++VDDFLQSLGLEKYSITFQAEEVDMTAL HM DEDLKA+G+PM+   + + I  ++
Sbjct: 133 KASSTVDDFLQSLGLEKYSITFQAEEVDMTALAHMTDEDLKAIGIPMLIHHDGEKIKTKS 192

Query: 62  FRAKKEDPFG 72
               K DP G
Sbjct: 193 KSLMKADPNG 202

[Close]
BLAST of Cp4.1LG12g11150 vs. NCBI nr
Match: gi|118482098|gb|ABK92980.1| (unknown [Populus trichocarpa])

HSP 1 Score: 84.7 bits (208), Expect = 1.8e-13
Identity = 42/47 (89.36%), Postives = 44/47 (93.62%), Query Frame = 1 

Query: 4   DTSVDDFLQSLGLEKYSITFQAEEVDMTALVHMGDEDLKALGVPMVN 51
           D+SVD FLQSLGLEKY ITFQAEEVDMTALVHM DEDLKALG+PMVN
Sbjct: 142 DSSVDVFLQSLGLEKYLITFQAEEVDMTALVHMTDEDLKALGIPMVN 188

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g11150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g11150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9W5_CUCSA1.8e-1593.62Uncharacterized protein OS=Cucumis sativus GN=Csa_7G341210 PE=4 SV=1[more]
W9RW23_9ROSA2.6e-1461.43Uncharacterized protein OS=Morus notabilis GN=L484_007030 PE=4 SV=1[more]
A9P9C7_POPTR1.3e-1389.36Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1[more]
U5FVW9_POPTR1.3e-1389.36Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s18960g PE=4 SV=1[more]
A5AVU2_VITVI1.7e-1383.33Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011025 PE=4 SV=1[more]
BLAST of Cp4.1LG12g11150 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07170.11.3e-1270.21 Sterile alpha motif (SAM) domain-containing protein[more]
AT5G48680.12.8e-1272.34 Sterile alpha motif (SAM) domain-containing protein[more]
AT1G70180.23.6e-0758.14 Sterile alpha motif (SAM) domain-containing protein[more]
BLAST of Cp4.1LG12g11150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443732|ref|XP_004139631.1|2.6e-1593.62PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Cucumis sativus][more]
gi|659116333|ref|XP_008458022.1|2.6e-1593.62PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Cucumis melo][more]
gi|568885277|ref|XP_006495217.1|5.7e-1581.13PREDICTED: uncharacterized protein LOC102624211 [Citrus sinensis][more]
gi|703128808|ref|XP_010104190.1|3.7e-1461.43hypothetical protein L484_007030 [Morus notabilis][more]
gi|118482098|gb|ABK92980.1|1.8e-1389.36unknown [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013761SAM/pointed_sf
IPR001660SAM
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g11150.1Cp4.1LG12g11150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 4..46
score: 4.9
IPR001660Sterile alpha motif domainPROFILEPS50105SAM_DOMAINcoord: 2..65
score: 10
IPR013761Sterile alpha motif/pointed domainGENE3DG3DSA:1.10.150.50coord: 5..47
score: 5.3
IPR013761Sterile alpha motif/pointed domainunknownSSF47769SAM/Pointed domaincoord: 5..52
score: 8.13
NoneNo IPR availablePANTHERPTHR23509FAMILY NOT NAMEDcoord: 1..48
score: 3.4
NoneNo IPR availablePANTHERPTHR23509:SF1SUBFAMILY NOT NAMEDcoord: 1..48
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g11150Cucumber (Gy14) v2cgybcpeB900
Cp4.1LG12g11150Melon (DHL92) v3.6.1cpemedB146
Cp4.1LG12g11150Silver-seed gourdcarcpeB0116
Cp4.1LG12g11150Cucumber (Chinese Long) v3cpecucB0182
Cp4.1LG12g11150Wax gourdcpewgoB0209
Cp4.1LG12g11150Cucurbita pepo (Zucchini)cpecpeB160
Cp4.1LG12g11150Cucumber (Gy14) v1cgycpeB0132
Cp4.1LG12g11150Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g11150Cucurbita maxima (Rimu)cmacpeB896
Cp4.1LG12g11150Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g11150Cucurbita moschata (Rifu)cmocpeB834
Cp4.1LG12g11150Wild cucumber (PI 183967)cpecpiB159
Cp4.1LG12g11150Cucumber (Chinese Long) v2cpecuB157
Cp4.1LG12g11150Bottle gourd (USVL1VR-Ls)cpelsiB111
Cp4.1LG12g11150Watermelon (Charleston Gray)cpewcgB129
Cp4.1LG12g11150Watermelon (97103) v1cpewmB135
Cp4.1LG12g11150Melon (DHL92) v3.5.1cpemeB119