Cp4.1LG12g10620 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g10620
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Descriptionvacuolar protein sorting-associated protein 2.3
LocationCp4.1LG12 : 9268501 .. 9270445 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATATCTTTTCGAAGAAACCTACCGCCAAAGGTCGTCACCAATTGCTGCCGTTTGTTTTTCTTAATCGATTTCGTTCATTTGATGATTCTTTTTTCTAAATTTGTAGCGGAAACTTGTTCATCTGTTTCTGCATTGCTCTCAGTTCCTCCTTTTTGCTTTGATATTTTTGTTCTGGGTTGCTTTGATTCGGTTGTTCTTTATGTGATTAAACTTGTTTCGATTACAGAAGCTCTTCGGGAGAGTAAAAGGGAAATGACGCGCTCTACGAGAGGTATCTTATTGATGTTTCTTAAGTGCACTTAATTAGTAAGGGATTCATCTGGTTTCAAAGTCATGATTGCGCTTATGTCTCGAGTAATTAAATTTATTCATGTTTCTCATCATATTTGTGTATATTGCAACTCGTCCATATGCTCATGATGATGTTTATTTTGGACTGAATGGAGCAAAGAAGCATGTAATTTATGATTGCATATGGTACTAGCGAGAACCACTTACCCCCAACCGGTTTCCTCACAGAGAAAAGGAGATGAAAATTTGGGCTTGAACTTAGAGTTTGCTTGTGAGATCCCACGTTGGTTAGGGAGGAGAATGAAACATTCTTTACAAGGGTGTGGAAACCTCTCCAAGCAGACGCGTTTTAAAAATCTTGAGGGGAAGCTTGAAAGGGAAAGCCCAAAAAGGACAGTATTTGCTGGCGGTGGGCTTGGACTGTTACAAATGGTATAAGAGCTAGACATCGGGCTATGTGCCAGCGAGGAGGTTGAGCCCTGAAGGGGGGTGGAGTGTGAGATCCCACATCGGTTGAGAGGAGAACAAAGCATTCTTTATAAGAGTGTAGAAACCTCTCCCTAACAGACATGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAACCCAAAGAGGATAATATCTATAGCGGTGGGCTTGGGCTGTTACAAATGGTATCAAAGTCAGACACCGGGCAATGTGCTACGAGGAGACTAAGCCCCGAAGGTGGGTGGATTGTGATATCCCACATCAGTTGGGGAGGAGAATGAAGCATTCTTTATAAGAGTGTGAAAACCTCTCCCTAGCAGATGTGTTTTAAAAACCTTGAGGGGAAGCCCGAAAGGGAAAGCTCAAAGAGGACAATATCGGATAGCGGTGAATTTGGGTTCTTACACTCAATATGCCATACCAATAATGCTATGGCTTCAATATGCCATACCAATAATGGTATGGCTTTGAGTTGGGATAAGATGGTACTAATGTTTTGGGATTACATTTTGCAATTGTTTTCAGAATAGAATGATATTCTGTGGTTATGTTTCTCGACACTTCTTGAAGTTAAGAATGCCATTTCCTTACCTTGAATTGATATTCCTTTGCACGTAACTACGTTGTTTAATTCCTTATACTATTTTTTGTAAAGTGTCACTTCCTTAGATGTTTTTGTTTCATTTTCATACTATAATAATTGTTCTTTTCTCTTTTCTTTGTGATATCACTGAGTGGTCTCATCTTTTTGCCACTTTTTCTCAGGTATAGAGAAGGAAATTGGGGCATTGCAATTAGAAGTACGTGAAGAGCTTCTAAACATGGGTTTAATCTAAATATTCTGTGTTTTAACTGTGATTTGGTTTATAATCTTATCAGGAAAAGAAGCTGGTCGCTGAGATAAAGAGAACTGCCAAAACAGGAAACGAGGTACATTTCATATTCTCGACCAGATTGTATCGGTCCTAGTCCTACGGAGGGTTGATTCTTTTTGAAAAATTCTTCTTCTGGGGTCGAGCATTAATTATGTTTATCATCATCCATTCGATTCTTCAGGCAGCGACGAAGATTCTTGCTCGGCAGTTAGTTAGGCTCAGGCAACAAATAGCAAAATTACAAGGTAGTCGAGCTCAAATGAGAGGCATAGCAACTCACACACAGGTTAAGTCAAGTGCCTAA

mRNA sequence

ATGAATATCTTTTCGAAGAAACCTACCGCCAAAGCGGAAACTTGTTCATCTGTTTCTGCATTGCTCTCAGTTCCTCCTTTTTGCTTTGATATTTTTGTTCTGGGTTGCTTTGATTCGGTTGTTCTTTATGTGATTAAACTTGTTTCGATTACAGAAGCTCTTCGGGAGAGTAAAAGGGAAATGACGCGCTCTACGAGAGGTATAGAGAAGGAAATTGGGGCATTGCAATTAGAAGAAAAGAAGCTGGTCGCTGAGATAAAGAGAACTGCCAAAACAGGAAACGAGGCAGCGACGAAGATTCTTGCTCGGCAGTTAGTTAGGCTCAGGCAACAAATAGCAAAATTACAAGGTAGTCGAGCTCAAATGAGAGGCATAGCAACTCACACACAGGTTAAGTCAAGTGCCTAA

Coding sequence (CDS)

ATGAATATCTTTTCGAAGAAACCTACCGCCAAAGCGGAAACTTGTTCATCTGTTTCTGCATTGCTCTCAGTTCCTCCTTTTTGCTTTGATATTTTTGTTCTGGGTTGCTTTGATTCGGTTGTTCTTTATGTGATTAAACTTGTTTCGATTACAGAAGCTCTTCGGGAGAGTAAAAGGGAAATGACGCGCTCTACGAGAGGTATAGAGAAGGAAATTGGGGCATTGCAATTAGAAGAAAAGAAGCTGGTCGCTGAGATAAAGAGAACTGCCAAAACAGGAAACGAGGCAGCGACGAAGATTCTTGCTCGGCAGTTAGTTAGGCTCAGGCAACAAATAGCAAAATTACAAGGTAGTCGAGCTCAAATGAGAGGCATAGCAACTCACACACAGGTTAAGTCAAGTGCCTAA

Protein sequence

MNIFSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVIKLVSITEALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRAQMRGIATHTQVKSSA
Homology
[Close]
BLAST of Cp4.1LG12g10620 vs. Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           E LRESKREMT++TRGIEKEIG+LQ EEKKLV EIKRTAK+GNE ATKILARQL+RLRQQ
Sbjct: 12  EVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2)

HSP 1 Score: 117.9 bits (294), Expect = 8.8e-26
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           +ALR SKREM  +TRGIE+EI +LQLEEK+LVAEIK+TAKTGNEAATKILARQLVRLRQQ
Sbjct: 12  DALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           I  LQGSRAQ+RG+ THTQ
Sbjct: 72  ITNLQGSRAQIRGVTTHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-10
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           E LRE+KR + +S R IE+E   LQ +EKKL+ EIK+TAK G   A K++A+ L+R R Q
Sbjct: 14  ELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQ 73

Query: 112 IAKLQGSRAQMRGIATHTQVKSS 135
           I K    ++Q++G++   Q   S
Sbjct: 74  IEKFYKLKSQLQGVSLRIQTLKS 96

[Close]
BLAST of Cp4.1LG12g10620 vs. Swiss-Prot
Match: DID4_YEAST (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 9.8e-09
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = 1 

Query: 46  KLVSITEALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQL 105
           K V+  E L++++R + R+ R +E+E   L+L++KKLV+EIK++AK G  AA K+ A+ L
Sbjct: 10  KNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDL 69

Query: 106 VRLRQQIAKLQGSRAQMRGIATHTQVKSSA 136
           VR R  I K    +AQ++ I+   Q   S+
Sbjct: 70  VRTRNYIQKFDNMKAQLQAISLRIQAVRSS 99

[Close]
BLAST of Cp4.1LG12g10620 vs. Swiss-Prot
Match: CH2BB_XENLA (Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-b PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-08
Identity = 33/91 (36.26%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 44  VIKLVSITEALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILAR 103
           + K  ++ + +RE  +E+  + R I ++  AL+ +EK+L  EIK+ AKTGN+ A ++LA+
Sbjct: 4   LFKKKTVDDIIREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAK 63

Query: 104 QLVRLRQQIAKLQGSRAQMRGIATHTQVKSS 135
           QLV+LR+Q  +     +++  ++T T+V SS
Sbjct: 64  QLVQLRKQKTRTYAVSSKVTSMSTQTKVMSS 94

[Close]
BLAST of Cp4.1LG12g10620 vs. TrEMBL
Match: A0A0A0K5C0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372290 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-30
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ
Sbjct: 12  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. TrEMBL
Match: A0A151T5Y0_CAJCA (Vacuolar protein sorting-associated protein 2 isogeny 3 OS=Cajanus cajan GN=KK1_016973 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 7.8e-29
Identity = 74/79 (93.67%), Postives = 76/79 (96.20%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           EALRESKREM  +TRG+EKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ
Sbjct: 12  EALRESKREMANATRGVEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. TrEMBL
Match: A0A0B2NZJ4_GLYSO (Vacuolar protein sorting-associated protein 2 like 3 OS=Glycine soja GN=glysoja_002514 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-28
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           EALR+SKR+MT +TRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQL+RLRQQ
Sbjct: 12  EALRDSKRQMTNATRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLIRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. TrEMBL
Match: I1N9S5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G166200 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-28
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           EALR+SKR+MT +TRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQL+RLRQQ
Sbjct: 12  EALRDSKRQMTNATRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLIRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. TrEMBL
Match: C6SYZ9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-28
Identity = 73/79 (92.41%), Postives = 77/79 (97.47%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           EALR+SKR+MT +TRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQL+RLRQQ
Sbjct: 12  EALRDSKRQMTNATRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLIRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. TAIR10
Match: AT1G03950.1 (AT1G03950.1 vacuolar protein sorting-associated protein 2.3)

HSP 1 Score: 127.1 bits (318), Expect = 8.2e-30
Identity = 69/79 (87.34%), Postives = 74/79 (93.67%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           E LRESKREMT++TRGIEKEIG+LQ EEKKLV EIKRTAK+GNE ATKILARQL+RLRQQ
Sbjct: 12  EVLRESKREMTQATRGIEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. TAIR10
Match: AT5G44560.1 (AT5G44560.1 SNF7 family protein)

HSP 1 Score: 117.9 bits (294), Expect = 5.0e-27
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           +ALR SKREM  +TRGIE+EI +LQLEEK+LVAEIK+TAKTGNEAATKILARQLVRLRQQ
Sbjct: 12  DALRTSKREMAVATRGIEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           I  LQGSRAQ+RG+ THTQ
Sbjct: 72  ITNLQGSRAQIRGVTTHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. TAIR10
Match: AT2G06530.1 (AT2G06530.1 SNF7 family protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-11
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           E LRE+KR + +S R IE+E   LQ +EKKL+ EIK+TAK G   A K++A+ L+R R Q
Sbjct: 14  ELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQ 73

Query: 112 IAKLQGSRAQMRGIATHTQVKSS 135
           I K    ++Q++G++   Q   S
Sbjct: 74  IEKFYKLKSQLQGVSLRIQTLKS 96

[Close]
BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match: gi|449465288|ref|XP_004150360.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-30
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ
Sbjct: 12  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match: gi|659092810|ref|XP_008447230.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis melo])

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-30
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ
Sbjct: 12  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match: gi|743850881|ref|XP_011028844.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Populus euphratica])

HSP 1 Score: 136.3 bits (342), Expect = 3.8e-29
Identity = 84/130 (64.62%), Postives = 95/130 (73.08%), Query Frame = 1 

Query: 4   FSKKPTAKAETCSSVSALLSVPPFCFDIFVLGCFDSVVLYVI---KLVSITEALRESKRE 63
           F   P +        SA L     C +I +L  F S+++ +    K  +  EALR+SKRE
Sbjct: 3   FLSDPNSTCPLRICFSAYLLSKQRCLEIKILCFFQSIIIKMNLFNKKPNPKEALRDSKRE 62

Query: 64  MTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQIAKLQGSRA 123
           M  STRG+EKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQL+RLRQQIA LQGSRA
Sbjct: 63  MKNSTRGLEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLIRLRQQIANLQGSRA 122

Query: 124 QMRGIATHTQ 131
           QMRGIATHTQ
Sbjct: 123 QMRGIATHTQ 132

[Close]
BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match: gi|1009147173|ref|XP_015891272.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Ziziphus jujuba])

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-29
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           EALRESKREMT +TRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ
Sbjct: 12  EALRESKREMTIATRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

[Close]
BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match: gi|645260025|ref|XP_008235640.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Prunus mume])

HSP 1 Score: 135.2 bits (339), Expect = 8.6e-29
Identity = 75/79 (94.94%), Postives = 76/79 (96.20%), Query Frame = 1 

Query: 52  EALRESKREMTRSTRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 111
           EALRESKREM  +TRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ
Sbjct: 12  EALRESKREMANATRGIEKEIGALQLEEKKLVAEIKRTAKTGNEAATKILARQLVRLRQQ 71

Query: 112 IAKLQGSRAQMRGIATHTQ 131
           IA LQGSRAQMRGIATHTQ
Sbjct: 72  IANLQGSRAQMRGIATHTQ 90

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g10620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
VPS2C_ARATH1.5e-2887.34Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana ... [more]
VPS2B_ARATH8.8e-2681.01Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana ... [more]
VPS2A_ARATH2.3e-1044.58Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana ... [more]
DID4_YEAST9.8e-0940.00DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC ... [more]
CH2BB_XENLA4.9e-0836.26Charged multivesicular body protein 2b-B OS=Xenopus laevis GN=chmp2b-b PE=2 SV=1[more]
BLAST of Cp4.1LG12g10620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5C0_CUCSA1.9e-3098.73Uncharacterized protein OS=Cucumis sativus GN=Csa_7G372290 PE=3 SV=1[more]
A0A151T5Y0_CAJCA7.8e-2993.67Vacuolar protein sorting-associated protein 2 isogeny 3 OS=Cajanus cajan GN=KK1_... [more]
A0A0B2NZJ4_GLYSO1.0e-2892.41Vacuolar protein sorting-associated protein 2 like 3 OS=Glycine soja GN=glysoja_... [more]
I1N9S5_SOYBN1.0e-2892.41Uncharacterized protein OS=Glycine max GN=GLYMA_19G166200 PE=3 SV=1[more]
C6SYZ9_SOYBN1.0e-2892.41Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of Cp4.1LG12g10620 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03950.18.2e-3087.34 vacuolar protein sorting-associated protein 2.3[more]
AT5G44560.15.0e-2781.01 SNF7 family protein[more]
AT2G06530.11.3e-1144.58 SNF7 family protein[more]
BLAST of Cp4.1LG12g10620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465288|ref|XP_004150360.1|2.7e-3098.73PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis sati... [more]
gi|659092810|ref|XP_008447230.1|2.7e-3098.73PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Cucumis melo... [more]
gi|743850881|ref|XP_011028844.1|3.8e-2964.62PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3-like [Populus... [more]
gi|1009147173|ref|XP_015891272.1|5.0e-2996.20PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Ziziphus juj... [more]
gi|645260025|ref|XP_008235640.1|8.6e-2994.94PREDICTED: vacuolar protein sorting-associated protein 2 homolog 3 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007034vacuolar transport
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007034 vacuolar transport
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g10620.1Cp4.1LG12g10620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005024Snf7 familyPFAMPF03357Snf7coord: 56..133
score: 4.5
NoneNo IPR availablePANTHERPTHR10476CHARGED MULTIVESICULAR BODY PROTEINcoord: 52..130
score: 1.0
NoneNo IPR availablePANTHERPTHR10476:SF15VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 2 HOMOLOG 3coord: 52..130
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g10620Wax gourdcpewgoB0209
Cp4.1LG12g10620Cucurbita pepo (Zucchini)cpecpeB153
Cp4.1LG12g10620Cucumber (Gy14) v1cgycpeB1027
Cp4.1LG12g10620Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g10620Cucurbita maxima (Rimu)cmacpeB896
Cp4.1LG12g10620Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g10620Cucurbita moschata (Rifu)cmocpeB834
Cp4.1LG12g10620Wild cucumber (PI 183967)cpecpiB159
Cp4.1LG12g10620Cucumber (Chinese Long) v2cpecuB157
Cp4.1LG12g10620Bottle gourd (USVL1VR-Ls)cpelsiB111
Cp4.1LG12g10620Watermelon (Charleston Gray)cpewcgB129
Cp4.1LG12g10620Watermelon (97103) v1cpewmB135
Cp4.1LG12g10620Melon (DHL92) v3.5.1cpemeB125
Cp4.1LG12g10620Cucumber (Gy14) v2cgybcpeB900
Cp4.1LG12g10620Melon (DHL92) v3.6.1cpemedB146
Cp4.1LG12g10620Melon (DHL92) v3.6.1cpemedB149
Cp4.1LG12g10620Melon (DHL92) v3.6.1cpemedB153
Cp4.1LG12g10620Silver-seed gourdcarcpeB0018
Cp4.1LG12g10620Silver-seed gourdcarcpeB0116
Cp4.1LG12g10620Cucumber (Chinese Long) v3cpecucB0182