CmoCh20G010830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G010830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cmo_Chr20 : 10253868 .. 10254725 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGACCTTTGGCCCAATCCCTCTCCATCAGGCTGTCACAATCCGTCTCACTAAAAACAACTTCATCATATGGCGCGCCCAACTCCTCCCCTACCTACGGAGTACGAAGCTTATGGGCTACCTCGATGGCACCATTGTTGCACCTGCCAAGCTGGTCCCTTCCTCAACCACTGATGGTGTTGATATGGTCTCTAATCCGGCCTATGATCGGTGGTATGTTCAGGATCAACAGGTCCTTAGTGGCCTTCTCTCCTCCATGTCTGAGGAGATTCTTCATGATATGGTTGCCGCTACTACTTCCAAGGAGGCGTGGGATACACTGCAGCAGATGTTTTCGTCGTTAACTCGTGCTCGCACTGTTCAGATCCGTGTTGAGCTCACCACGTCCAAGAAACGCGATATGTCTGCTGCAGATTATTTTCGCAAGATCAAAGGGCTAGCCACCGAGCTGGCTGCCGCCGGCTCTGCCTTGCAGGATGATGATGTGATCGCGTATCTCTTCGCTGGTCTTGGCCCTGACTATGATCCCTTCGTCACCTCGATGACTACCAAGAGTGAATCCCTCACGCTTGATGATGTGTTTGCACATCTAATGGCGTTTGAAGGTCATCAACTACAACACCAGGCTGTACTTCAATTAAATTCTGGATCTTCAGTTGATTATGCTGGTTGTGGTGGTCTGCAGAAGAACTGTGAGTGTAGGGATCGTGGTCGTGGCCGTTCTCAAGGTGGTGTGCCCTCTCGTCTTACTGGTAATCGTCGTGACCCTTCTGCTCGTCCTACTTGCCAAATCTGCGGCAAATTGGGGCATACTGCCGTTCGCTGCTGGCATAGGATGGATGAGTCCTATTAA

mRNA sequence

ATGGCGTCGACCTTTGGCCCAATCCCTCTCCATCAGGCTGTCACAATCCGTCTCACTAAAAACAACTTCATCATATGGCGCGCCCAACTCCTCCCCTACCTACGGAGTACGAAGCTTATGGGCTACCTCGATGGCACCATTGTTGCACCTGCCAAGCTGGTCCCTTCCTCAACCACTGATGGTGTTGATATGGTCTCTAATCCGGCCTATGATCGGTGGTATGTTCAGGATCAACAGGTCCTTAGTGGCCTTCTCTCCTCCATGTCTGAGGAGATTCTTCATGATATGGTTGCCGCTACTACTTCCAAGGAGGCGTGGGATACACTGCAGCAGATGTTTTCGTCGTTAACTCGTGCTCGCACTGTTCAGATCCGTGTTGAGCTCACCACGTCCAAGAAACGCGATATGTCTGCTGCAGATTATTTTCGCAAGATCAAAGGGCTAGCCACCGAGCTGGCTGCCGCCGGCTCTGCCTTGCAGGATGATGATGTGATCGCGTATCTCTTCGCTGGTCTTGGCCCTGACTATGATCCCTTCGTCACCTCGATGACTACCAAGAGTGAATCCCTCACGCTTGATGATGTGTTTGCACATCTAATGGCGTTTGAAGGTCATCAACTACAACACCAGGCTGTACTTCAATTAAATTCTGGATCTTCAGTTGATTATGCTGGTTGTGGTGGTCTGCAGAAGAACTGTGAGTGTAGGGATCGTGGTCGTGGCCGTTCTCAAGGTGGTGTGCCCTCTCGTCTTACTGGTAATCGTCGTGACCCTTCTGCTCGTCCTACTTGCCAAATCTGCGGCAAATTGGGGCATACTGCCGTTCGCTGCTGGCATAGGATGGATGAGTCCTATTAA

Coding sequence (CDS)

ATGGCGTCGACCTTTGGCCCAATCCCTCTCCATCAGGCTGTCACAATCCGTCTCACTAAAAACAACTTCATCATATGGCGCGCCCAACTCCTCCCCTACCTACGGAGTACGAAGCTTATGGGCTACCTCGATGGCACCATTGTTGCACCTGCCAAGCTGGTCCCTTCCTCAACCACTGATGGTGTTGATATGGTCTCTAATCCGGCCTATGATCGGTGGTATGTTCAGGATCAACAGGTCCTTAGTGGCCTTCTCTCCTCCATGTCTGAGGAGATTCTTCATGATATGGTTGCCGCTACTACTTCCAAGGAGGCGTGGGATACACTGCAGCAGATGTTTTCGTCGTTAACTCGTGCTCGCACTGTTCAGATCCGTGTTGAGCTCACCACGTCCAAGAAACGCGATATGTCTGCTGCAGATTATTTTCGCAAGATCAAAGGGCTAGCCACCGAGCTGGCTGCCGCCGGCTCTGCCTTGCAGGATGATGATGTGATCGCGTATCTCTTCGCTGGTCTTGGCCCTGACTATGATCCCTTCGTCACCTCGATGACTACCAAGAGTGAATCCCTCACGCTTGATGATGTGTTTGCACATCTAATGGCGTTTGAAGGTCATCAACTACAACACCAGGCTGTACTTCAATTAAATTCTGGATCTTCAGTTGATTATGCTGGTTGTGGTGGTCTGCAGAAGAACTGTGAGTGTAGGGATCGTGGTCGTGGCCGTTCTCAAGGTGGTGTGCCCTCTCGTCTTACTGGTAATCGTCGTGACCCTTCTGCTCGTCCTACTTGCCAAATCTGCGGCAAATTGGGGCATACTGCCGTTCGCTGCTGGCATAGGATGGATGAGTCCTATTAA

Homology

[Close]

BLAST of CmoCh20G010830 vs. TrEMBL
Match: A0A096R8L4_MAIZE (Uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 4.3e-61
Identity = 124/188 (65.96%), Postives = 153/188 (81.38%), Query Frame = 1


Query: 7   PIPLHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLVPSSTTDGVDMVS 66
           PIP+HQ VTIRLTK+NF++WRAQLLPYLRS KL+G+LDGT  A A  + +  T     V 
Sbjct: 3   PIPIHQVVTIRLTKSNFLLWRAQLLPYLRSWKLIGHLDGTQAARALTIAAGATQ----VP 62

Query: 67  NPAYDRWYVQDQQVLSGLLSSMSEEILHDMVAATTSKEAWDTLQQMFSSLTRARTVQIRV 126
           NPAY+RWY QDQQ+LSGLLSSMSEE+L D+V AT+S+E WD LQ+ F+S T+ARTVQIRV
Sbjct: 63  NPAYERWYNQDQQLLSGLLSSMSEEVLWDVVHATSSREVWDFLQKNFASSTKARTVQIRV 122

Query: 127 ELTTSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGPDYDPFVTSMTTK 186
           EL T+KKRDM  AD+FRKI  L TELAAA +  +D++V+AYLFA L  DYDPF+TSMTTK
Sbjct: 123 ELATAKKRDMYVADFFRKITRLDTELAAADAPFRDEEVLAYLFASLPADYDPFITSMTTK 182

Query: 187 SESLTLDD 195
           +E+L+LD+
Sbjct: 183 NEALSLDN 186

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BLAST of CmoCh20G010830 vs. TrEMBL
Match: C0PCZ1_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 3.6e-60
Identity = 133/302 (44.04%), Postives = 193/302 (63.91%), Query Frame = 1


Query: 1   MASTFGPIP---LHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLV--- 60
           +A+ F  +P     Q V+++L   N+++W AQ+LPYLRS  L G++DG++ AP + V   
Sbjct: 10  VAAVFSSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVD 69

Query: 61  PSSTTDGVDMVSNPAYDRWYVQDQQVLSGLLSSMSEEILHDMVAATTSKEAWDTLQQMFS 120
           P+  + G  +  NP +  WY QDQ VLS + SS+SEE+L  +V ATT++ AW TL++M++
Sbjct: 70  PAEGSGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYA 129

Query: 121 SLTRARTVQIRVELTTSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGP 180
           S +RAR +QIR++L T +K D++AA+YFRK+K LA  LAA G  L+D++ I+YL  GL  
Sbjct: 130 SSSRARIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPA 189

Query: 181 DYDPFVTSMTTKSESLTLDDVFAHLMAFEGHQLQHQAVLQL---NSGSSVDYAGCGGLQK 240
           DYD  VTS+TT+ ++ T+ DV+AHL++FE  Q  H AV Q+   N+ + V   G G   +
Sbjct: 190 DYDSLVTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQ 249

Query: 241 NCECRDRGRGRSQGGVPSRLTGNRRDPSARP--------TCQICGKLGHTAVRCWHRMDE 286
           N     RG GR +GG      GN R P+  P        TCQICGK  H A++CWHR D+
Sbjct: 250 N----GRG-GRGRGGRSQPGRGNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHRFDQ 306

[Close]

BLAST of CmoCh20G010830 vs. TrEMBL
Match: B8A366_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.1e-59
Identity = 132/302 (43.71%), Postives = 192/302 (63.58%), Query Frame = 1


Query: 1   MASTFGPIP---LHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLV--- 60
           +A+ F  +P     Q V+++L   N+++W AQ+LPYLRS  L G++DG++ AP + V   
Sbjct: 10  VAAVFSSMPTPAFSQMVSMKLNHENYLLWVAQVLPYLRSQGLSGHIDGSLPAPRQTVAVD 69

Query: 61  PSSTTDGVDMVSNPAYDRWYVQDQQVLSGLLSSMSEEILHDMVAATTSKEAWDTLQQMFS 120
           P+  + G  +  NP +  WY QDQ VLS + SS+SEE+L  +V ATT++ AW TL++M++
Sbjct: 70  PAEGSGGRTIAINPEFTSWYHQDQLVLSVINSSLSEEVLATVVDATTARGAWSTLERMYA 129

Query: 121 SLTRARTVQIRVELTTSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGP 180
           S +R R +QIR++L T +K D++AA+YFRK+K LA  LAA G  L+D++ I+YL  GL  
Sbjct: 130 SSSRVRIMQIRMQLATIQKGDLTAAEYFRKVKRLADTLAAVGKRLEDEEFISYLLRGLPA 189

Query: 181 DYDPFVTSMTTKSESLTLDDVFAHLMAFEGHQLQHQAVLQL---NSGSSVDYAGCGGLQK 240
           DYD  VTS+TT+ ++ T+ DV+AHL++FE  Q  H AV Q+   N+ + V   G G   +
Sbjct: 190 DYDSLVTSITTRPDTYTISDVYAHLLSFETRQEYHTAVGQISSVNNANRVPSRGGGAFGQ 249

Query: 241 NCECRDRGRGRSQGGVPSRLTGNRRDPSARP--------TCQICGKLGHTAVRCWHRMDE 286
           N     RG GR +GG      GN R P+  P        TCQICGK  H A++CWHR D+
Sbjct: 250 N----GRG-GRGRGGRSQPGRGNNRPPARPPSNNSSSSGTCQICGKGNHNALQCWHRFDQ 306

[Close]

BLAST of CmoCh20G010830 vs. TrEMBL
Match: V7B6D9_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G110300g PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 7.3e-53
Identity = 115/285 (40.35%), Postives = 180/285 (63.16%), Query Frame = 1


Query: 10  LHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLVPSSTTDGVDMVSNPA 69
           + Q + ++LT+ N+++W AQ+LPYLRS  L+G++DG+++ P + +  S            
Sbjct: 6   ISQVINVKLTQENYLLWSAQILPYLRSQGLVGFVDGSMLPPNQRLRLS------------ 65

Query: 70  YDRWYVQDQQVLSGLLSSMSEEILHDMVAATTSKEAWDTLQQMFSSLTRARTVQIRVELT 129
                 QDQ VLS + SS++EE+L  +V  TT++EAWDTL++ F+S +RAR +QIR+EL+
Sbjct: 66  ------QDQLVLSLINSSVTEEVLSTVVGITTAREAWDTLERQFASTSRARAMQIRMELS 125

Query: 130 TSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGPDYDPFVTSMTTKSES 189
           T +K+DM+ ADYFRK+K L   LAA G  ++D+++IAY+  GLGPDYDPFVTS+TT+++ 
Sbjct: 126 TIQKKDMTIADYFRKVKRLRDTLAAIGKRVEDEELIAYMLQGLGPDYDPFVTSITTRTDV 185

Query: 190 LTLDDVFAHLMAFEGHQLQHQAVLQLNSGSSVDYAGCGGLQKNCECRDRGRGRSQGGVPS 249
            T+ DV+AH++++E   L++  + Q +S ++V+     G   N     RGRGR   G   
Sbjct: 186 YTVSDVYAHMLSYEMRHLRNGTLEQFSSANNVNRMSNRG-GTNGRRGGRGRGRQSNGGRG 245

Query: 250 RLTGNRRDPSARPT---------CQICGKLGHTAVRCWHRMDESY 286
           +    R +   +P+          QICGK  H A++CWH  D+ Y
Sbjct: 246 QTWHTRNNFGRQPSKAQSNSDKVYQICGKPNHDALQCWHIFDQEY 271

[Close]

BLAST of CmoCh20G010830 vs. TrEMBL
Match: V7CSV3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G323600g PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 9.6e-53
Identity = 113/292 (38.70%), Postives = 180/292 (61.64%), Query Frame = 1


Query: 3   STFGPIPLHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLVPSSTTDGV 62
           +T     + Q + ++LT+ N+++W AQ+LPYLRS  L+G++DG++  P + +   T + +
Sbjct: 8   NTMSSPSISQVINVKLTQENYLLWSAQILPYLRSQGLVGFVDGSMPPPNQTI---TVESI 67

Query: 63  DMVSNPAYDRWYVQDQQVLSGLLSSMSEEILHDMVAATTSKEAWDTLQQMFSSLTRARTV 122
                     WY QDQ VLS + SS++EE+L  +V  TT++EAWD L++ F+S +RAR +
Sbjct: 68  ----------WYPQDQLVLSLINSSVTEEVLSTVVGITTAREAWDMLERQFASTSRARAM 127

Query: 123 QIRVELTTSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGPDYDPFVTS 182
           Q  +EL+T +K+DM+ ADYFRK+K L   LAA G  ++D+++IAY+  GLG DYDP VTS
Sbjct: 128 QNHMELSTIQKKDMTIADYFRKVKRLGDTLAAIGKRVEDEELIAYMLQGLGLDYDPLVTS 187

Query: 183 MTTKSESLTLDDVFAHLMAFEGHQLQHQAVLQLNSGSSVDYAGCGGLQKNCECRDRGRGR 242
           +TT+++  T+ DV+AH++++E   L++  + Q    ++V+     G       R  GRGR
Sbjct: 188 ITTRTDVYTVSDVYAHMLSYEMRHLRNGTLEQFPFANNVNSMSNRG---GTNGRRGGRGR 247

Query: 243 SQGGVPSRLTGNRRDPSARPT---------CQICGKLGHTAVRCWHRMDESY 286
              G   +    R +   +P+         CQICGK  H A++CWHR D++Y
Sbjct: 248 QSNGGRGQTWHTRNNSGRQPSKAQSNSDKVCQICGKPNHDALQCWHRFDQAY 283

[Close]

BLAST of CmoCh20G010830 vs. TAIR10
Match: AT1G34070.1 (AT1G34070.1 Retrotransposon gag protein (InterPro:IPR005162))

HSP 1 Score: 72.0 bits (175), Expect = 6.6e-13
Identity = 51/197 (25.89%), Postives = 91/197 (46.19%), Query Frame = 1


Query: 8   IPLHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLVPSSTTDGVDMVSN 67
           I  H  V + + ++N+  WR   L +  S  +MG++DGT      L+P++  D       
Sbjct: 16  IKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGT------LLPTNANDV------ 75

Query: 68  PAYDRWYVQDQQVLSGLLSSMS-EEILHDMVAATTSKEAWDTLQQMFSSLTRARTVQIRV 127
                W  +D  V   L  +++ ++     V ++TS++ W  ++  F +   AR +++  
Sbjct: 76  ----NWQKRDGIVKLSLYGTLTPKQFQGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDS 135

Query: 128 ELTTSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGPDYDPFVTSMTTK 187
           EL T    DM  ADY+RK+K LA  L      + D +++ Y+  GL P +D  +  +  +
Sbjct: 136 ELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHR 195

Query: 188 SESLTLDDVFAHLMAFE 204
               + DD    L   E
Sbjct: 196 QPFPSFDDAATMLQEEE 196

[Close]

BLAST of CmoCh20G010830 vs. NCBI nr
Match: gi|670388504|ref|XP_008674717.1| (PREDICTED: uncharacterized protein LOC103650906 isoform X1 [Zea mays])

HSP 1 Score: 334.0 bits (855), Expect = 2.6e-88
Identity = 164/284 (57.75%), Postives = 217/284 (76.41%), Query Frame = 1


Query: 2   ASTFGPIPLHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLVPSSTTDG 61
           +S+   IP+HQ VTIRLTK NF++WRAQLLP+LR  +LMG+LDG+ +APA+ + SST   
Sbjct: 4   SSSAAHIPIHQVVTIRLTKTNFLLWRAQLLPHLRGAQLMGFLDGSNLAPAQQIASSTDAN 63

Query: 62  VDMVSNPAYDRWYVQDQQVLSGLLSSMSEEILHDMVAATTSKEAWDTLQQMFSSLTRART 121
             ++ NPAY+ W+ QDQQ+LSGLLSSM+E++L D++  ++SKEAWD L  M+SS +RAR 
Sbjct: 64  ARVIPNPAYEWWFNQDQQILSGLLSSMTEDVLGDIITVSSSKEAWDILNSMYSSASRARI 123

Query: 122 VQIRVELTTSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGPDYDPFVT 181
           VQIR++L T KKRD+SAADYF KIK  A++LAAA + L++D+ +AYL AGLGP+YD FVT
Sbjct: 124 VQIRMDLATIKKRDLSAADYFCKIKSYASDLAAAAAPLREDEKVAYLLAGLGPEYDSFVT 183

Query: 182 SMTTKSESLTLDDVFAHLMAFEGHQLQHQAVLQLNSGSSVDYAGCGGLQKNCECRDRGRG 241
           +MTTKSE+LT DD++AH +++E  QLQHQA  +LN G+  +YAG GG Q     R RGRG
Sbjct: 184 AMTTKSEALTFDDIYAHFLSYEARQLQHQAETRLNVGTMANYAGRGGSQH----RGRGRG 243

Query: 242 RSQGGVPSRLTGNRRDPSARPTCQICGKLGHTAVRCWHRMDESY 286
            S+G       G+   P+ R  CQICGKLGHTA++CWHRMD+SY
Sbjct: 244 NSRGQSSFHGPGH-TGPTTRDPCQICGKLGHTALKCWHRMDKSY 282

[Close]

BLAST of CmoCh20G010830 vs. NCBI nr
Match: gi|670388508|ref|XP_008674719.1| (PREDICTED: uncharacterized protein LOC103650906 isoform X2 [Zea mays])

HSP 1 Score: 334.0 bits (855), Expect = 2.6e-88
Identity = 164/284 (57.75%), Postives = 217/284 (76.41%), Query Frame = 1


Query: 2   ASTFGPIPLHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLVPSSTTDG 61
           +S+   IP+HQ VTIRLTK NF++WRAQLLP+LR  +LMG+LDG+ +APA+ + SST   
Sbjct: 4   SSSAAHIPIHQVVTIRLTKTNFLLWRAQLLPHLRGAQLMGFLDGSNLAPAQQIASSTDAN 63

Query: 62  VDMVSNPAYDRWYVQDQQVLSGLLSSMSEEILHDMVAATTSKEAWDTLQQMFSSLTRART 121
             ++ NPAY+ W+ QDQQ+LSGLLSSM+E++L D++  ++SKEAWD L  M+SS +RAR 
Sbjct: 64  ARVIPNPAYEWWFNQDQQILSGLLSSMTEDVLGDIITVSSSKEAWDILNSMYSSASRARI 123

Query: 122 VQIRVELTTSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGPDYDPFVT 181
           VQIR++L T KKRD+SAADYF KIK  A++LAAA + L++D+ +AYL AGLGP+YD FVT
Sbjct: 124 VQIRMDLATIKKRDLSAADYFCKIKSYASDLAAAAAPLREDEKVAYLLAGLGPEYDSFVT 183

Query: 182 SMTTKSESLTLDDVFAHLMAFEGHQLQHQAVLQLNSGSSVDYAGCGGLQKNCECRDRGRG 241
           +MTTKSE+LT DD++AH +++E  QLQHQA  +LN G+  +YAG GG Q     R RGRG
Sbjct: 184 AMTTKSEALTFDDIYAHFLSYEARQLQHQAETRLNVGTMANYAGRGGSQH----RGRGRG 243

Query: 242 RSQGGVPSRLTGNRRDPSARPTCQICGKLGHTAVRCWHRMDESY 286
            S+G       G+   P+ R  CQICGKLGHTA++CWHRMD+SY
Sbjct: 244 NSRGQSSFHGPGH-TGPTTRDPCQICGKLGHTALKCWHRMDKSY 282

[Close]

BLAST of CmoCh20G010830 vs. NCBI nr
Match: gi|670370937|ref|XP_008666719.1| (PREDICTED: uncharacterized protein LOC103645443 [Zea mays])

HSP 1 Score: 306.2 bits (783), Expect = 5.9e-80
Identity = 157/240 (65.42%), Postives = 191/240 (79.58%), Query Frame = 1


Query: 7   PIPLHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLVPSSTTDGVDMVS 66
           PIPLH  VTIRLTK+N+++WRAQL+P+LRS KLMGYLDGT+ APA+L+ SST  G   V+
Sbjct: 14  PIPLHHVVTIRLTKSNYLLWRAQLVPFLRSAKLMGYLDGTLSAPAQLIASSTATGAAQVA 73

Query: 67  NPAYDRWYVQDQQVLSGLLSSMSEEILHDMVAATTSKEAWDTLQQMFSSLTRARTVQIRV 126
           NPAY RWY QDQQ+LSGLLSSM+E++L D+VAAT+SKE WD+LQ+ FSS TRA TVQIRV
Sbjct: 74  NPAYIRWYDQDQQLLSGLLSSMTEDVLRDVVAATSSKEVWDSLQKKFSSSTRACTVQIRV 133

Query: 127 ELTTSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGPDYDPFVTSMTTK 186
           EL T+KKRD +AADY+ KI GLA ELAAAG+ LQDD+V++YL  GL  +YD FVTS+T+K
Sbjct: 134 ELATAKKRDSTAADYYHKITGLANELAAAGAPLQDDEVLSYLLVGLPAEYDLFVTSITSK 193

Query: 187 SESLTLDDVFAHLMAFEGHQLQHQAVLQLNSGSSVDYAGCGGLQKNCECRDRGRGRSQGG 246
           ++ LTLDDVFAHLMAFE  QLQHQ  +QLN+  S +Y G GG         RGRGR+  G
Sbjct: 194 TDPLTLDDVFAHLMAFEARQLQHQTEIQLNTDMSANYVGRGGR------GHRGRGRNTRG 247

[Close]

BLAST of CmoCh20G010830 vs. NCBI nr
Match: gi|670447915|ref|XP_008664171.1| (PREDICTED: uncharacterized protein LOC103642757 [Zea mays])

HSP 1 Score: 270.8 bits (691), Expect = 2.8e-69
Identity = 135/211 (63.98%), Postives = 169/211 (80.09%), Query Frame = 1


Query: 7   PIPLHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLVPSSTTDGVDMVS 66
           P+P+ QAVTIRLTK N+++WRAQ LPYLRS+KLMG+LDG+  APA  V +ST DG   + 
Sbjct: 4   PVPISQAVTIRLTKANYLLWRAQALPYLRSSKLMGFLDGSKPAPATTVVASTVDGATPIP 63

Query: 67  NPAYDRWYVQDQQVLSGLLSSMSEEILHDMVAATTSKEAWDTLQQMFSSLTRARTVQIRV 126
           NP YDRW+ QDQQ+LSGLLS+M+E++L D+V A TSKE WD+LQ+ F+S T+ARTVQIRV
Sbjct: 64  NPEYDRWFDQDQQLLSGLLSTMTEDVLRDVVLAKTSKEVWDSLQKKFASSTKARTVQIRV 123

Query: 127 ELTTSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGPDYDPFVTSMTTK 186
           EL T KKRD+SAAD+F KI GLA ELAAA + L D++V+AYL AGL  +YDPFVTSMTTK
Sbjct: 124 ELATLKKRDLSAADFFHKIMGLANELAAADAPLCDEEVLAYLLAGLPVEYDPFVTSMTTK 183

Query: 187 SESLTLDDVFAHLMAFEGHQLQHQAVLQLNS 218
           SE+ +LDDVFAHL+AFE  +L  +     +S
Sbjct: 184 SEAFSLDDVFAHLVAFEARRLHTRRTCNCSS 214

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BLAST of CmoCh20G010830 vs. NCBI nr
Match: gi|413943632|gb|AFW76281.1| (hypothetical protein ZEAMMB73_463302 [Zea mays])

HSP 1 Score: 243.0 bits (619), Expect = 6.1e-61
Identity = 124/188 (65.96%), Postives = 153/188 (81.38%), Query Frame = 1


Query: 7   PIPLHQAVTIRLTKNNFIIWRAQLLPYLRSTKLMGYLDGTIVAPAKLVPSSTTDGVDMVS 66
           PIP+HQ VTIRLTK+NF++WRAQLLPYLRS KL+G+LDGT  A A  + +  T     V 
Sbjct: 3   PIPIHQVVTIRLTKSNFLLWRAQLLPYLRSWKLIGHLDGTQAARALTIAAGATQ----VP 62

Query: 67  NPAYDRWYVQDQQVLSGLLSSMSEEILHDMVAATTSKEAWDTLQQMFSSLTRARTVQIRV 126
           NPAY+RWY QDQQ+LSGLLSSMSEE+L D+V AT+S+E WD LQ+ F+S T+ARTVQIRV
Sbjct: 63  NPAYERWYNQDQQLLSGLLSSMSEEVLWDVVHATSSREVWDFLQKNFASSTKARTVQIRV 122

Query: 127 ELTTSKKRDMSAADYFRKIKGLATELAAAGSALQDDDVIAYLFAGLGPDYDPFVTSMTTK 186
           EL T+KKRDM  AD+FRKI  L TELAAA +  +D++V+AYLFA L  DYDPF+TSMTTK
Sbjct: 123 ELATAKKRDMYVADFFRKITRLDTELAAADAPFRDEEVLAYLFASLPADYDPFITSMTTK 182

Query: 187 SESLTLDD 195
           +E+L+LD+
Sbjct: 183 NEALSLDN 186

The following BLAST results are available for this feature:

BLAST of CmoCh20G010830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G010830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A096R8L4_MAIZE	4.3e-61	65.96	Uncharacterized protein OS=Zea mays PE=4 SV=1	[more]
C0PCZ1_MAIZE	3.6e-60	44.04	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]
B8A366_MAIZE	1.1e-59	43.71	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]
V7B6D9_PHAVU	7.3e-53	40.35	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G110300g PE=4 SV=1	[more]
V7CSV3_PHAVU	9.6e-53	38.70	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G323600g PE=4 SV=1	[more]

BLAST of CmoCh20G010830 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G34070.1	6.6e-13	25.89	Retrotransposon gag protein (InterPro:IPR005162)	[more]

BLAST of CmoCh20G010830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|670388504\|ref\|XP_008674717.1\|	2.6e-88	57.75	PREDICTED: uncharacterized protein LOC103650906 isoform X1 [Zea mays]	[more]
gi\|670388508\|ref\|XP_008674719.1\|	2.6e-88	57.75	PREDICTED: uncharacterized protein LOC103650906 isoform X2 [Zea mays]	[more]
gi\|670370937\|ref\|XP_008666719.1\|	5.9e-80	65.42	PREDICTED: uncharacterized protein LOC103645443 [Zea mays]	[more]
gi\|670447915\|ref\|XP_008664171.1\|	2.8e-69	63.98	PREDICTED: uncharacterized protein LOC103642757 [Zea mays]	[more]
gi\|413943632\|gb\|AFW76281.1\|	6.1e-61	65.96	hypothetical protein ZEAMMB73_463302 [Zea mays]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G010830.1	CmoCh20G010830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 12..285 score: 1.3
None	No IPR available	PANTHER	PTHR11439:SF185	SUBFAMILY NOT NAMED	coord: 12..285 score: 1.3
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 73..203 score: 8.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G010830	Watermelon (97103) v2	cmowmbB546
CmoCh20G010830	Wax gourd	cmowgoB0682
CmoCh20G010830	Cucurbita moschata (Rifu)	cmocmoB414
CmoCh20G010830	Cucumber (Gy14) v1	cgycmoB0696
CmoCh20G010830	Cucurbita maxima (Rimu)	cmacmoB551
CmoCh20G010830	Cucurbita maxima (Rimu)	cmacmoB616
CmoCh20G010830	Wild cucumber (PI 183967)	cmocpiB537
CmoCh20G010830	Cucumber (Chinese Long) v2	cmocuB532
CmoCh20G010830	Melon (DHL92) v3.5.1	cmomeB486
CmoCh20G010830	Melon (DHL92) v3.5.1	cmomeB492
CmoCh20G010830	Watermelon (Charleston Gray)	cmowcgB480
CmoCh20G010830	Watermelon (97103) v1	cmowmB521
CmoCh20G010830	Cucurbita pepo (Zucchini)	cmocpeB516
CmoCh20G010830	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G010830	Cucurbita pepo (Zucchini)	cmocpeB530
CmoCh20G010830	Bottle gourd (USVL1VR-Ls)	cmolsiB492
CmoCh20G010830	Cucumber (Gy14) v2	cgybcmoB210
CmoCh20G010830	Cucumber (Gy14) v2	cgybcmoB214
CmoCh20G010830	Melon (DHL92) v3.6.1	cmomedB562
CmoCh20G010830	Silver-seed gourd	carcmoB0977
CmoCh20G010830	Silver-seed gourd	carcmoB1419
CmoCh20G010830	Cucumber (Chinese Long) v3	cmocucB0638
CmoCh20G010830	Cucumber (Chinese Long) v3	cmocucB0642