CmoCh19G006670 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G006670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Hydroxyproline-rich glycofamily protein, putative
Location	Cmo_Chr19 : 7153673 .. 7154050 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCTCAAATACCGAGAGAGACGGGGCCGATCGAGCCACCATATCCATGGTTGACGAACCAAAGAGCGGTGGTTCATACACTAAACTATATGACATCGAACCAAATCCTAACGATCACTGGGGATGTCAAGTGCCACCATTGTCAAAGAATTTACGAGATCGAATACGACATTGTTTTGAAGTTCAACGAGATCGGGAGCTTCGTAGAGAACAACATGGAGTCGCTCCAGGACCGGACGCCGAGGTCGTGGATATGGCCGAATTATTCGACGTGTCGGTTTTGCGGGACGGAAAAAGGAGTGAGGCCGGTGATTCCAAAGGAATGTGAGAAGATCAATTGGGTGTTCTTGCTTTTGGGAGAAATGGTGTTGTAA

mRNA sequence

ATGAAATCTCAAATACCGAGAGAGACGGGGCCGATCGAGCCACCATATCCATGGTTGACGAACCAAAGAGCGGTGGTTCATACACTAAACTATATGACATCGAACCAAATCCTAACGATCACTGGGGATGTCAAGTGCCACCATTGTCAAAGAATTTACGAGATCGAATACGACATTGTTTTGAAGTTCAACGAGATCGGGAGCTTCGTAGAGAACAACATGGAGTCGCTCCAGGACCGGACGCCGAGGTCGTGGATATGGCCGAATTATTCGACGTGTCGGTTTTGCGGGACGGAAAAAGGAGTGAGGCCGGTGATTCCAAAGGAATGTGAGAAGATCAATTGGGTGTTCTTGCTTTTGGGAGAAATGGTGTTGTAA

Coding sequence (CDS)

ATGAAATCTCAAATACCGAGAGAGACGGGGCCGATCGAGCCACCATATCCATGGTTGACGAACCAAAGAGCGGTGGTTCATACACTAAACTATATGACATCGAACCAAATCCTAACGATCACTGGGGATGTCAAGTGCCACCATTGTCAAAGAATTTACGAGATCGAATACGACATTGTTTTGAAGTTCAACGAGATCGGGAGCTTCGTAGAGAACAACATGGAGTCGCTCCAGGACCGGACGCCGAGGTCGTGGATATGGCCGAATTATTCGACGTGTCGGTTTTGCGGGACGGAAAAAGGAGTGAGGCCGGTGATTCCAAAGGAATGTGAGAAGATCAATTGGGTGTTCTTGCTTTTGGGAGAAATGGTGTTGTAA

Homology

[Close]

BLAST of CmoCh19G006670 vs. TrEMBL
Match: A0A0A0K3Q8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G259350 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 80/122 (65.57%), Postives = 92/122 (75.41%), Query Frame = 1


Query: 3   SQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLK 62
           S+ PR T  IEPPYPW TN+RA+V TLN + SNQIL ITGDV+C  CQ  Y IEYD+  K
Sbjct: 67  SRSPRTTETIEPPYPWSTNRRAMVRTLNDLKSNQILQITGDVQCRQCQVEYTIEYDMDSK 126

Query: 63  FNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGE 122
           F EI SFVE N  S +DR P+SW+ PNY TCRFCG E G RPVIPK+  KINW+FLLLGE
Sbjct: 127 FEEIASFVEENKNSFRDRAPQSWMNPNYPTCRFCGHENGARPVIPKQWRKINWLFLLLGE 186

Query: 123 MV 125
           M+
Sbjct: 187 ML 188

[Close]

BLAST of CmoCh19G006670 vs. TrEMBL
Match: A0A059AMX4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01256 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 8.5e-30
Identity = 57/115 (49.57%), Postives = 82/115 (71.30%), Query Frame = 1


Query: 8   ETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIG 67
           ET P+  P+PW TN+RA VH++NY+ SN+I TITG+V+C  C++++EIEYD+  KF E+G
Sbjct: 10  ETVPV--PFPWATNRRATVHSMNYLLSNRIFTITGEVQCKKCEKVFEIEYDLRGKFLEVG 69

Query: 68  SFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGE 123
           +F+  N  ++ DR P  W+ P    CRFC  E   +PVI  + +KINW+FLLLG+
Sbjct: 70  NFIAQNKATMHDRAPHEWMSPVLPKCRFCNQENSAKPVISAKKKKINWLFLLLGQ 122

[Close]

BLAST of CmoCh19G006670 vs. TrEMBL
Match: A0A061EZE0_THECC (Hydroxyproline-rich glycofamily protein, putative OS=Theobroma cacao GN=TCM_022015 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 4.2e-29
Identity = 59/123 (47.97%), Postives = 87/123 (70.73%), Query Frame = 1


Query: 4   QIPRE--TGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVL 63
           Q P++  T  +  PYPW T QRA VH+L+Y+ S+ I TI+G+VKC  C++IY+IEYD+  
Sbjct: 117 QTPKQGKTETVPAPYPWATTQRATVHSLDYLLSHNITTISGEVKCKKCEKIYKIEYDLQQ 176

Query: 64  KFNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLG 123
           KF E+ SF+  N  S+ DR P  W++P   +C FCG+   ++PV+PK+ + INW+FLLLG
Sbjct: 177 KFTEVASFISRNKLSMHDRAPSDWMYPTLPSCEFCGSY--LKPVLPKK-KSINWLFLLLG 236

Query: 124 EMV 125
           +M+
Sbjct: 237 QML 236

[Close]

BLAST of CmoCh19G006670 vs. TrEMBL
Match: M1AWU7_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012319 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 5.5e-29
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = 1


Query: 12  IEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIGSFVE 71
           I PPYPW TN RA VH+LN +  NQI TITG+V+C  C+R YEI +D+  KF ++GSF+ 
Sbjct: 52  IPPPYPWATNHRAKVHSLNMLRLNQITTITGEVQCRRCERKYEIGFDLCDKFAQVGSFIS 111

Query: 72  NNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGEMV 125
            N E +  R P  W+ P Y  C+FC  E  V+P+I  + + INWVFLLLG+ +
Sbjct: 112 ANKELMHQRAPSIWMSPIYLNCKFCEQENSVKPIIASKKKSINWVFLLLGQFI 164

[Close]

BLAST of CmoCh19G006670 vs. TrEMBL
Match: A0A022RS93_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025061mg PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.4e-29
Identity = 52/113 (46.02%), Postives = 80/113 (70.80%), Query Frame = 1


Query: 12  IEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIGSFVE 71
           I PP+PW TN RA VH+LN++ SNQI  ++G+V+C  C+R Y I ++++ K+NE+ +++ 
Sbjct: 153 ITPPFPWSTNLRATVHSLNHLLSNQIGAVSGEVQCRRCERRYTISFNLMQKYNEVAAYIT 212

Query: 72  NNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGEMV 125
           NN +++  R P++W+ P   TC FCG E   RPVI  +   INW+FLLLG+M+
Sbjct: 213 NNRDAMHHRAPKAWLSPPLPTCEFCGQENAARPVIADKKRSINWLFLLLGQML 265

[Close]

BLAST of CmoCh19G006670 vs. TAIR10
Match: AT1G49330.1 (AT1G49330.1 hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-30
Identity = 49/121 (40.50%), Postives = 79/121 (65.29%), Query Frame = 1


Query: 2   KSQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVL 61
           +S + +++  I PP+PW TN+R  + +L Y+ SNQI TITG+V+C HC+++Y++ Y++  
Sbjct: 157 RSTVSKKSDTISPPFPWATNRRGEIQSLEYLESNQITTITGEVQCRHCEKVYQVSYNLRE 216

Query: 62  KFNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLG 121
           +F E+  F       ++DR  + W +P    C  CG EK V+PVI +   +INW+FLLLG
Sbjct: 217 RFAEVVKFYLTEKRKMRDRAHKDWAYPEQRRCELCGREKAVKPVIAERKSQINWLFLLLG 276

Query: 122 E 123
           +
Sbjct: 277 Q 277

[Close]

BLAST of CmoCh19G006670 vs. TAIR10
Match: AT2G16190.1 (AT2G16190.1 BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1))

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-21
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 12  IEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIGSFVE 71
           I PPYPW T +   + +   ++SN I  I+G V C  C R   +EY++  KF+E+  +++
Sbjct: 147 IVPPYPWATKKPGKIQSFRDLSSNNINVISGQVHCKTCDRTDTVEYNLEEKFSELYGYIK 206

Query: 72  NNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGEMV 125
            N E ++ R P SW  P    CR C +E  ++PV+ +  E+INW+FLLLG+M+
Sbjct: 207 VNKEEMRHRAPGSWSTPKLIPCRTCKSE--MKPVMSERKEEINWLFLLLGQML 257

[Close]

BLAST of CmoCh19G006670 vs. NCBI nr
Match: gi|778730280|ref|XP_011659748.1| (PREDICTED: uncharacterized protein LOC105436256 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.5e-40
Identity = 80/122 (65.57%), Postives = 92/122 (75.41%), Query Frame = 1


Query: 3   SQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLK 62
           S+ PR T  IEPPYPW TN+RA+V TLN + SNQIL ITGDV+C  CQ  Y IEYD+  K
Sbjct: 67  SRSPRTTETIEPPYPWSTNRRAMVRTLNDLKSNQILQITGDVQCRQCQVEYTIEYDMDSK 126

Query: 63  FNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGE 122
           F EI SFVE N  S +DR P+SW+ PNY TCRFCG E G RPVIPK+  KINW+FLLLGE
Sbjct: 127 FEEIASFVEENKNSFRDRAPQSWMNPNYPTCRFCGHENGARPVIPKQWRKINWLFLLLGE 186

Query: 123 MV 125
           M+
Sbjct: 187 ML 188

[Close]

BLAST of CmoCh19G006670 vs. NCBI nr
Match: gi|659092939|ref|XP_008447299.1| (PREDICTED: uncharacterized protein LOC103489770 [Cucumis melo])

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-40
Identity = 80/122 (65.57%), Postives = 91/122 (74.59%), Query Frame = 1


Query: 3   SQIPRETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLK 62
           S+ PR T  IEPPYPW TN+RA+V TLN + S+QIL ITGDV+C  CQ  Y IEYD+V K
Sbjct: 61  SRSPRTTETIEPPYPWSTNRRAMVRTLNDLRSSQILQITGDVRCRQCQIEYTIEYDMVSK 120

Query: 63  FNEIGSFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGE 122
           F EI SFVE N    +DR PRSW+ PNY TCRFCG E G RPVIP E  KINW+FLLLGE
Sbjct: 121 FEEIASFVEENKNLFRDRAPRSWMNPNYPTCRFCGHENGARPVIPDEWRKINWLFLLLGE 180

Query: 123 MV 125
           M+
Sbjct: 181 ML 182

[Close]

BLAST of CmoCh19G006670 vs. NCBI nr
Match: gi|729471401|ref|XP_010527372.1| (PREDICTED: uncharacterized protein LOC104804728 [Tarenaya hassleriana])

HSP 1 Score: 139.4 bits (350), Expect = 4.2e-30
Identity = 59/110 (53.64%), Postives = 76/110 (69.09%), Query Frame = 1


Query: 12  IEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIGSFVE 71
           + PPYPW TNQR  +H+L Y+ S QI  ITGDV+C HC++I++I YD+  KF E+  F+E
Sbjct: 148 VPPPYPWATNQRGRIHSLEYLESKQITAITGDVQCKHCEKIWQISYDLKEKFAEVEKFIE 207

Query: 72  NNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLG 122
            N ESL++R P  W+ P    C FC  EKGV+PVI     KINW+FLLLG
Sbjct: 208 ENKESLRERAPTIWMNPVAMRCEFCEREKGVKPVISDRKRKINWLFLLLG 257

[Close]

BLAST of CmoCh19G006670 vs. NCBI nr
Match: gi|629089084|gb|KCW55337.1| (hypothetical protein EUGRSUZ_I01256 [Eucalyptus grandis])

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 57/115 (49.57%), Postives = 82/115 (71.30%), Query Frame = 1


Query: 8   ETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIG 67
           ET P+  P+PW TN+RA VH++NY+ SN+I TITG+V+C  C++++EIEYD+  KF E+G
Sbjct: 10  ETVPV--PFPWATNRRATVHSMNYLLSNRIFTITGEVQCKKCEKVFEIEYDLRGKFLEVG 69

Query: 68  SFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGE 123
           +F+  N  ++ DR P  W+ P    CRFC  E   +PVI  + +KINW+FLLLG+
Sbjct: 70  NFIAQNKATMHDRAPHEWMSPVLPKCRFCNQENSAKPVISAKKKKINWLFLLLGQ 122

[Close]

BLAST of CmoCh19G006670 vs. NCBI nr
Match: gi|702470914|ref|XP_010030668.1| (PREDICTED: uncharacterized protein LOC104420542 [Eucalyptus grandis])

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 57/115 (49.57%), Postives = 82/115 (71.30%), Query Frame = 1


Query: 8   ETGPIEPPYPWLTNQRAVVHTLNYMTSNQILTITGDVKCHHCQRIYEIEYDIVLKFNEIG 67
           ET P+  P+PW TN+RA VH++NY+ SN+I TITG+V+C  C++++EIEYD+  KF E+G
Sbjct: 213 ETVPV--PFPWATNRRATVHSMNYLLSNRIFTITGEVQCKKCEKVFEIEYDLRGKFLEVG 272

Query: 68  SFVENNMESLQDRTPRSWIWPNYSTCRFCGTEKGVRPVIPKECEKINWVFLLLGE 123
           +F+  N  ++ DR P  W+ P    CRFC  E   +PVI  + +KINW+FLLLG+
Sbjct: 273 NFIAQNKATMHDRAPHEWMSPVLPKCRFCNQENSAKPVISAKKKKINWLFLLLGQ 325

The following BLAST results are available for this feature:

BLAST of CmoCh19G006670 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh19G006670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3Q8_CUCSA	1.1e-40	65.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G259350 PE=4 SV=1	[more]
A0A059AMX4_EUCGR	8.5e-30	49.57	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01256 PE=4 SV=1	[more]
A0A061EZE0_THECC	4.2e-29	47.97	Hydroxyproline-rich glycofamily protein, putative OS=Theobroma cacao GN=TCM_0220...	[more]
M1AWU7_SOLTU	5.5e-29	50.44	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400012319 PE=4 SV=1	[more]
A0A022RS93_ERYGU	9.4e-29	46.02	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025061mg PE=4 SV=1	[more]

BLAST of CmoCh19G006670 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G49330.1	2.0e-30	40.50	hydroxyproline-rich glycoprotein family protein	[more]
AT2G16190.1	1.7e-21	38.94	BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glyc...	[more]

BLAST of CmoCh19G006670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730280\|ref\|XP_011659748.1\|	1.5e-40	65.57	PREDICTED: uncharacterized protein LOC105436256 [Cucumis sativus]	[more]
gi\|659092939\|ref\|XP_008447299.1\|	2.6e-40	65.57	PREDICTED: uncharacterized protein LOC103489770 [Cucumis melo]	[more]
gi\|729471401\|ref\|XP_010527372.1\|	4.2e-30	53.64	PREDICTED: uncharacterized protein LOC104804728 [Tarenaya hassleriana]	[more]
gi\|629089084\|gb\|KCW55337.1\|	1.2e-29	49.57	hypothetical protein EUGRSUZ_I01256 [Eucalyptus grandis]	[more]
gi\|702470914\|ref\|XP_010030668.1\|	1.2e-29	49.57	PREDICTED: uncharacterized protein LOC104420542 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh19G006670.1	CmoCh19G006670.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34272	FAMILY NOT NAMED	coord: 12..123 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh19G006670	Cucumber (Chinese Long) v3	cmocucB0590
CmoCh19G006670	Cucumber (Chinese Long) v3	cmocucB0625
CmoCh19G006670	Watermelon (97103) v2	cmowmbB507
CmoCh19G006670	Watermelon (97103) v2	cmowmbB512
CmoCh19G006670	Wax gourd	cmowgoB0641
CmoCh19G006670	Wax gourd	cmowgoB0666
CmoCh19G006670	Cucurbita moschata (Rifu)	cmocmoB352
CmoCh19G006670	Cucurbita moschata (Rifu)	cmocmoB382
CmoCh19G006670	Cucurbita moschata (Rifu)	cmocmoB388
CmoCh19G006670	Cucumber (Gy14) v1	cgycmoB0251
CmoCh19G006670	Cucumber (Gy14) v1	cgycmoB0678
CmoCh19G006670	Cucurbita maxima (Rimu)	cmacmoB508
CmoCh19G006670	Cucurbita maxima (Rimu)	cmacmoB548
CmoCh19G006670	Cucurbita maxima (Rimu)	cmacmoB599
CmoCh19G006670	Wild cucumber (PI 183967)	cmocpiB500
CmoCh19G006670	Wild cucumber (PI 183967)	cmocpiB527
CmoCh19G006670	Cucumber (Chinese Long) v2	cmocuB496
CmoCh19G006670	Cucumber (Chinese Long) v2	cmocuB521
CmoCh19G006670	Melon (DHL92) v3.5.1	cmomeB453
CmoCh19G006670	Watermelon (Charleston Gray)	cmowcgB455
CmoCh19G006670	Watermelon (Charleston Gray)	cmowcgB459
CmoCh19G006670	Watermelon (97103) v1	cmowmB496
CmoCh19G006670	Watermelon (97103) v1	cmowmB498
CmoCh19G006670	Cucurbita pepo (Zucchini)	cmocpeB481
CmoCh19G006670	Cucurbita pepo (Zucchini)	cmocpeB484
CmoCh19G006670	Cucurbita pepo (Zucchini)	cmocpeB499
CmoCh19G006670	Bottle gourd (USVL1VR-Ls)	cmolsiB454
CmoCh19G006670	Bottle gourd (USVL1VR-Ls)	cmolsiB457
CmoCh19G006670	Cucumber (Gy14) v2	cgybcmoB202
CmoCh19G006670	Cucumber (Gy14) v2	cgybcmoB930
CmoCh19G006670	Melon (DHL92) v3.6.1	cmomedB522
CmoCh19G006670	Silver-seed gourd	carcmoB1202