CmoCh19G004280 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G004280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUbiquitin ligase protein cop1
LocationCmo_Chr19 : 5158850 .. 5160128 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAATGAATCCACGCCGCTCCGTCGCGAATGGACCTTCTCCCTCGCCTCCGTCGTCTCCTCCTCCTCCCTCATTGGCCCCGCTTCCGACACTCTCGGCGTCGTCGAATTCGACCCTTCTGATTCCCTCATCGCCACCGCCGGAATCGCTAGAAAAATCCGTGGCTACTCTCTTTCTAATCTCTTGCCGCATGACGGTACTGTTGCTATGTTGGACCACAGTCGTGCTTCTGAATTTTGTATCTGTACTCCGGCCAAGCTCAGTAGTCTCCGGTGGAAGCCTGGTGCCGGCGGACGGATCTTGGGCTCCGGTGACTATGATGGGGTTGTCATGGAGTATGATCTTGAAAAGAAAGTCCCGGTTTTTGAACGGGATGAACACGGCGGACGGCGCGTGTGGAGTTTGGATTACTCTACGGTGGATCCAATGGTGGGCGCGTCGGGGTCGGATGATGGTACGGTGCAAGTATGGGACACGCGCTGTGACGGTGTGGATTGTGTGGCGGTGGTGCAGCCGAGTGTGGTACGGAGTCCGGTTTGTTGCGTGGAGTTTAATCCCTACGGCGGCGCGTTGGTGGTAGTCGGGTGTGCAGACAGGAAAGCGTATGGGTACGACCGGCGGAAAATGACGGAGGCGGTCATGGTGTTTGAGGGGCACGCGAAAACGGTGACGTATGTGAAGTTCGTGGACGGGGGGACGATAGTGTCTGCGAGTACGGATGGGAGTTTGAAGATGTGGAAGGCGGAGGAGGGGGGAGATGGGGGTGGAGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAATGGGAGGAGCTTCGTCGGGTTATCGGTGTGGAGGAATGGGGGTTTAATCGGGTGCGGGTCGGAGGACAAGAGGGTGTTTGTGTATGATAAGAGGTGGGGGGAGGCGGTGTGGGTGGAGGAGTTTGATCGGGTCGGGTCGGGTTATGGGTTGGTGAGTAGTGTGTGTTGGAGGCAAGTGGGGGAGGATGAATGTACGTTGGTGGCTGGCGGGTCGGATGGTGTTTTGAAAGTTTTTGTGGGAGAGAAGAAGAGGTCGTTTTGATTCATTATTTCTCACACATTCAGATCTAACCCCACCACACATTACTTACCACTGGTTAGGACTTTTCTTTTTTCTTTTTTATTAGTTTTATTATTACTTTATTTAATAATACTTCATATTTTTTATATCTTATGAACCATTGATTTATTCATATGATTCCGTTCCATAATTATTTGATTATTTGGTTTTTTTTTTACACTAGAACTGA

mRNA sequence

ATGGGAAATGAATCCACGCCGCTCCGTCGCGAATGGACCTTCTCCCTCGCCTCCGTCGTCTCCTCCTCCTCCCTCATTGGCCCCGCTTCCGACACTCTCGGCGTCGTCGAATTCGACCCTTCTGATTCCCTCATCGCCACCGCCGGAATCGCTAGAAAAATCCGTGGCTACTCTCTTTCTAATCTCTTGCCGCATGACGGTACTGTTGCTATGTTGGACCACAGTCGTGCTTCTGAATTTTGTATCTGTACTCCGGCCAAGCTCAGTAGTCTCCGGTGGAAGCCTGGTGCCGGCGGACGGATCTTGGGCTCCGGTGACTATGATGGGGTTGTCATGGAGTATGATCTTGAAAAGAAAGTCCCGGTTTTTGAACGGGATGAACACGGCGGACGGCGCGTGTGGAGTTTGGATTACTCTACGGTGGATCCAATGGTGGGCGCGTCGGGGTCGGATGATGGTACGGTGCAAGTATGGGACACGCGCTGTGACGGTGTGGATTGTGTGGCGGTGGTGCAGCCGAGTGTGGTACGGAGTCCGGTTTGTTGCGTGGAGTTTAATCCCTACGGCGGCGCGTTGGTGGTAGTCGGGTGTGCAGACAGGAAAGCGTATGGGTACGACCGGCGGAAAATGACGGAGGCGGTCATGGTGTTTGAGGGGCACGCGAAAACGGTGACGTATGTGAAGTTCGTGGACGGGGGGACGATAGTGTCTGCGAGTACGGATGGGAGTTTGAAGATGTGGAAGGCGGAGGAGGGGGGAGATGGGGGTGGAGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAATGGGAGGAGCTTCGTCGGGTTATCGGTGTGGAGGAATGGGGGTTTAATCGGGTGCGGGTCGGAGGACAAGAGGAACTGA

Coding sequence (CDS)

ATGGGAAATGAATCCACGCCGCTCCGTCGCGAATGGACCTTCTCCCTCGCCTCCGTCGTCTCCTCCTCCTCCCTCATTGGCCCCGCTTCCGACACTCTCGGCGTCGTCGAATTCGACCCTTCTGATTCCCTCATCGCCACCGCCGGAATCGCTAGAAAAATCCGTGGCTACTCTCTTTCTAATCTCTTGCCGCATGACGGTACTGTTGCTATGTTGGACCACAGTCGTGCTTCTGAATTTTGTATCTGTACTCCGGCCAAGCTCAGTAGTCTCCGGTGGAAGCCTGGTGCCGGCGGACGGATCTTGGGCTCCGGTGACTATGATGGGGTTGTCATGGAGTATGATCTTGAAAAGAAAGTCCCGGTTTTTGAACGGGATGAACACGGCGGACGGCGCGTGTGGAGTTTGGATTACTCTACGGTGGATCCAATGGTGGGCGCGTCGGGGTCGGATGATGGTACGGTGCAAGTATGGGACACGCGCTGTGACGGTGTGGATTGTGTGGCGGTGGTGCAGCCGAGTGTGGTACGGAGTCCGGTTTGTTGCGTGGAGTTTAATCCCTACGGCGGCGCGTTGGTGGTAGTCGGGTGTGCAGACAGGAAAGCGTATGGGTACGACCGGCGGAAAATGACGGAGGCGGTCATGGTGTTTGAGGGGCACGCGAAAACGGTGACGTATGTGAAGTTCGTGGACGGGGGGACGATAGTGTCTGCGAGTACGGATGGGAGTTTGAAGATGTGGAAGGCGGAGGAGGGGGGAGATGGGGGTGGAGGTGCACGTGTGGTGCGCACGTACGAGGGGCACGTGAATGGGAGGAGCTTCGTCGGGTTATCGGTGTGGAGGAATGGGGGTTTAATCGGGTGCGGGTCGGAGGACAAGAGGAACTGA
Homology
[Close]
BLAST of CmoCh19G004280 vs. Swiss-Prot
Match: RUP2_ARATH (WD repeat-containing protein RUP2 OS=Arabidopsis thaliana GN=RUP2 PE=1 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 4.4e-102
Identity = 181/293 (61.77%), Postives = 224/293 (76.45%), Query Frame = 1 

Query: 9   RREWTFSLASVVSSSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPHDGT 68
           R EW  SL++VVSSSS    ASD +G +EFDP+D+++ATAGI+RKIR Y L +LL ++  
Sbjct: 21  RYEWDLSLSTVVSSSS--SSASDVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRNNAV 80

Query: 69  ----VAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFE 128
               V+ +D + A E+ ICTPAKLSSLRW+PG+GGR++GSGDYDGVVMEYDLEK+ PVFE
Sbjct: 81  SGTGVSFVDQATACEYYICTPAKLSSLRWRPGSGGRVIGSGDYDGVVMEYDLEKRTPVFE 140

Query: 129 RDEHGGRRVWSLDYSTVD--PMVGASGSDDGTVQVWDTRCDGVDCVAVVQPS-VVRSPVC 188
           RDEHGGRRVWS+DY+       VGASGSDDGT+QVWD RC   + V VV+P+ + RS VC
Sbjct: 141 RDEHGGRRVWSVDYTRHGGASTVGASGSDDGTMQVWDPRCPPEESVGVVRPAGICRSAVC 200

Query: 189 CVEFNPYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTD 248
           CVEF+P GG  V VGCADRK Y YD RK+ +  +  +GH KTV+YV+F+DGGT+V+A TD
Sbjct: 201 CVEFDPSGGPAVAVGCADRKGYVYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVVTAGTD 260

Query: 249 GSLKMWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           G LK+W  E+G       RV+RTYEGHVN R+FVGLSVWRNG L GCGSE+ R
Sbjct: 261 GCLKLWSVEDG-------RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNR 304

[Close]
BLAST of CmoCh19G004280 vs. Swiss-Prot
Match: RUP1_ARATH (WD repeat-containing protein RUP1 OS=Arabidopsis thaliana GN=RUP1 PE=1 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 2.0e-86
Identity = 166/295 (56.27%), Postives = 211/295 (71.53%), Query Frame = 1 

Query: 1   MGNESTPLRREWTFSLASVVSSSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLS 60
           M  E+ P R +W  SL++VVSS+S     SD +G +EFDP+  +IAT GIARKIR Y LS
Sbjct: 46  MNIENIP-RCDWDLSLSAVVSSAST---GSDAIGAIEFDPTGEIIATGGIARKIRSYRLS 105

Query: 61  NLLPHDGTVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKV 120
           +LL         DH  ASE  ICTPAKLSSL+W+P   GR++GSGDYDGVV EYD+EK+V
Sbjct: 106 SLLESRD-----DHVTASESYICTPAKLSSLKWRPDFSGRVIGSGDYDGVVTEYDVEKQV 165

Query: 121 PVFERDEHGGRRVWSLDYSTVD-PMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSP 180
           PV ERDEHGGRR+WS+DY+  +  ++GASGSDDGTVQ+WD R +G      V+P    + 
Sbjct: 166 PVSERDEHGGRRIWSVDYTLYNGSLIGASGSDDGTVQMWDPR-NGGTLEETVRPG-GGAA 225

Query: 181 VCCVEFNPYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSAS 240
           +C VEF+P+GG+ + VGCADR AY YD R++ + ++V +GH KTVTY +F+D  TIV+ S
Sbjct: 226 ICSVEFDPFGGSSIAVGCADRNAYVYDIRRLVDPLIVLDGHTKTVTYARFMDSHTIVTGS 285

Query: 241 TDGSLKMWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           TDGSLK W      D   G RVVRTY GHVN R+FVGLSVWR+GGL+  GSE+ +
Sbjct: 286 TDGSLKQW------DIDNGRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQ 323

[Close]
BLAST of CmoCh19G004280 vs. Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.1e-39
Identity = 95/265 (35.85%), Postives = 148/265 (55.85%), Query Frame = 1 

Query: 29  ASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLL--PHDGTVAMLDHSRASEFCICTPA 88
           +++ +  +EFD  D L ATAG++R+I+ +  S ++  P D    +++        + T +
Sbjct: 367 SANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCPVVE--------MTTRS 426

Query: 89  KLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFERDEHGGRRVWSLDYSTVDPMVG 148
           KLS L W   A  +I  S DY+G+V  + +  +  + E +EH  +R WS+D+S  DP + 
Sbjct: 427 KLSCLSWNKYAKNQI-ASSDYEGIVTVWTMTTRKSLMEYEEHE-KRAWSVDFSRTDPSML 486

Query: 149 ASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFNPYGGALVVVGCADRKAYGYD 208
            SGSDD  V+VW T  +     A V    +++ +CCV++NP  G  + VG AD   + YD
Sbjct: 487 VSGSDDCKVKVWCTNQE-----ASVLNIDMKANICCVKYNPGSGNYIAVGSADHHIHYYD 546

Query: 209 RRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKMWKAEEGGDGGGGARVVRTYE 268
            R ++  V VF GH K V+YVKF+    + SASTD +L++W  ++          VRT+ 
Sbjct: 547 LRNISRPVHVFTGHKKAVSYVKFLSNDELASASTDSTLRLWDVKQN-------LPVRTFR 606

Query: 269 GHVNGRSFVGLSVWRNGGLIGCGSE 292
           GH N ++FVGL+V      I CGSE
Sbjct: 607 GHANEKNFVGLTV--RSEYIACGSE 607

[Close]
BLAST of CmoCh19G004280 vs. Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 162.9 bits (411), Expect = 5.2e-39
Identity = 94/265 (35.47%), Postives = 149/265 (56.23%), Query Frame = 1 

Query: 29  ASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLL--PHDGTVAMLDHSRASEFCICTPA 88
           +++ +  +EFD  D L ATAG++R I+ +  S+++  P D    +++ S        T +
Sbjct: 370 SANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIVEMS--------TRS 429

Query: 89  KLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFERDEHGGRRVWSLDYSTVDPMVG 148
           KLS L W       I  S DY+G+V  +D+  +  + E +EH  +R WS+D+S  +P + 
Sbjct: 430 KLSCLSWNKHEKNHI-ASSDYEGIVTVWDVTTRQSLMEYEEHE-KRAWSVDFSRTEPSML 489

Query: 149 ASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFNPYGGALVVVGCADRKAYGYD 208
            SGSDD  V+VW TR +     A V    +++ +CCV++NP     + VG AD   + YD
Sbjct: 490 VSGSDDCKVKVWCTRQE-----ASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYD 549

Query: 209 RRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKMWKAEEGGDGGGGARVVRTYE 268
            R +++ + VF GH K V+YVKF+    + SASTD +L++W  ++          VRT+ 
Sbjct: 550 LRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDN-------LPVRTFR 609

Query: 269 GHVNGRSFVGLSVWRNGGLIGCGSE 292
           GH N ++FVGL+V  N   + CGSE
Sbjct: 610 GHTNEKNFVGLTV--NSEYLACGSE 610

[Close]
BLAST of CmoCh19G004280 vs. Swiss-Prot
Match: RFWD2_HUMAN (E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-36
Identity = 97/277 (35.02%), Postives = 152/277 (54.87%), Query Frame = 1 

Query: 18  SVVSSSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPHDGTVAMLDHSRA 77
           + +S +S +   S  +  +EFD      A AG+ +KI+ Y    ++      A+  H   
Sbjct: 409 ATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQD----AVDIHYPE 468

Query: 78  SEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYD--LEKKVPVFERDEHGGRRVWS 137
           +E   C  +K+S + W       +L S DY+G V+ +D    ++  V++  E   +R WS
Sbjct: 469 NEMT-CN-SKISCISWS-SYHKNLLASSDYEGTVILWDGFTGQRSKVYQEHE---KRCWS 528

Query: 138 LDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFNPYGGALVVV 197
           +D++ +DP + ASGSDD  V++W T  D  + VA ++    ++ VCCV+F+P     +  
Sbjct: 529 VDFNLMDPKLLASGSDDAKVKLWSTNLD--NSVASIE---AKANVCCVKFSPSSRYHLAF 588

Query: 198 GCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKMWKAEEGGDG 257
           GCAD   + YD R   + +MVF+GH K V+Y KFV G  IVSASTD  LK+W        
Sbjct: 589 GCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLKLWNV------ 648

Query: 258 GGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSED 293
            G    +R+++GH+N ++FVGL+   NG  I CGSE+
Sbjct: 649 -GKPYCLRSFKGHINEKNFVGLA--SNGDYIACGSEN 661

[Close]
BLAST of CmoCh19G004280 vs. TrEMBL
Match: A0A0A0LHK2_CUCSA (Ubiquitin ligase protein cop1 OS=Cucumis sativus GN=Csa_3G914590 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 1.0e-137
Identity = 245/293 (83.62%), Postives = 260/293 (88.74%), Query Frame = 1 

Query: 6   TPLRREWTFSLASVVSSSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLP- 65
           TPLR EW F+LASVVSS +    ASDTLGVVEFDPSDSLIATAGIARKIRGY L NLLP 
Sbjct: 27  TPLRCEWDFTLASVVSSPTNCA-ASDTLGVVEFDPSDSLIATAGIARKIRGYRLHNLLPQ 86

Query: 66  ---HDGTVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVP 125
              H+ T+  LDH+RAS+FCICTPAKLSSLRWKP A GRILGSGDYDGVVMEYDLE KVP
Sbjct: 87  DIDHNATITQLDHTRASDFCICTPAKLSSLRWKPNANGRILGSGDYDGVVMEYDLEMKVP 146

Query: 126 VFERDEHGGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVC 185
           +FERDEHGGRRVWS+DYSTV+P+VGASGSDDGTVQVWDTRC+  +CVAVVQPSVVRS VC
Sbjct: 147 IFERDEHGGRRVWSVDYSTVEPVVGASGSDDGTVQVWDTRCESGECVAVVQPSVVRSAVC 206

Query: 186 CVEFNPYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTD 245
           CVEFNP+GG LV VGCADRKAYGYDRRKM E V+VFEGH KTVTYVKFVDGGT+VSASTD
Sbjct: 207 CVEFNPFGGGLVAVGCADRKAYGYDRRKMREPVVVFEGHGKTVTYVKFVDGGTVVSASTD 266

Query: 246 GSLKMWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           GSLKMWK EE    GGGARVVRTYEGHVNGRSFVGLSVWR GGLIGCGSEDKR
Sbjct: 267 GSLKMWKTEE----GGGARVVRTYEGHVNGRSFVGLSVWREGGLIGCGSEDKR 314

[Close]
BLAST of CmoCh19G004280 vs. TrEMBL
Match: M5X3Q2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022067mg PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 8.2e-108
Identity = 187/288 (64.93%), Postives = 231/288 (80.21%), Query Frame = 1 

Query: 11  EWTFSLASVVSSS--SLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPHDG- 70
           EW F+L+++VSSS  S  G  S+T+GV+EFDPS++++AT GIARKIR YS ++LLP D  
Sbjct: 27  EWDFNLSTIVSSSGGSTGGAVSNTIGVIEFDPSNAVVATGGIARKIRVYSFNSLLPSDRF 86

Query: 71  -TVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFERD 130
               +LDH  A  + +CTPAKLSSLRW+PG+ GR+L SGDYDGVV EYDLE ++P+FERD
Sbjct: 87  CQANLLDHVTACAYTLCTPAKLSSLRWRPGSDGRVLCSGDYDGVVTEYDLETRLPIFERD 146

Query: 131 EHGGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFN 190
           EHGGRRVWS+DYS  DP +GASGSDDGT+Q+WD RCDG +CVA VQPS   +PVCC+EF+
Sbjct: 147 EHGGRRVWSVDYSHSDPFLGASGSDDGTLQMWDPRCDGGECVASVQPSKAGNPVCCLEFD 206

Query: 191 PYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKM 250
           P+GGALV VGCADR+AYGYD RKM + V+VF+GH KTVTYV+F+DG T+V+A TDG LK+
Sbjct: 207 PFGGALVAVGCADRRAYGYDMRKMVDPVLVFDGHRKTVTYVRFIDGCTVVTAGTDGCLKL 266

Query: 251 WKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           W  E+       +R +RTY+GH N RSFVGLSVWRNG LIGCGSED R
Sbjct: 267 WGTED-------SREIRTYKGHTNNRSFVGLSVWRNGKLIGCGSEDNR 307

[Close]
BLAST of CmoCh19G004280 vs. TrEMBL
Match: A0A067F9Y4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017773mg PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107
Identity = 185/284 (65.14%), Postives = 229/284 (80.63%), Query Frame = 1 

Query: 9   RREWTFSLASVVSSSSLIGPA-SDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPHDG 68
           R EW F+L + VSSSS    A SD++GV+EFDPSDS+ AT GIARKIR Y++ ++L    
Sbjct: 20  RCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHP 79

Query: 69  TVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFERDE 128
            VA++DHS+  ++ ICTPAKLSSL+WKPG  GR+LGSGDYDGVVMEYDLEKKVP+FERDE
Sbjct: 80  VVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDE 139

Query: 129 HGGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFNP 188
           HGGRRVWS+DYS  DP++GASGSDDGT+Q+WD RCDG  CV+ VQPS  RS VCCVEF+P
Sbjct: 140 HGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199

Query: 189 YGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKMW 248
           +G +LV  GCAD+KAY YD RKM + V+VF+GH KTVTY++F+D  T+V+A TDG LK+W
Sbjct: 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLW 259

Query: 249 KAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSE 292
              +       +RV+RTY+GHVN R+FVGLSVWR+GGL+GCGSE
Sbjct: 260 NVND-------SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE 296

[Close]
BLAST of CmoCh19G004280 vs. TrEMBL
Match: V4S493_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005222mg PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107
Identity = 185/284 (65.14%), Postives = 229/284 (80.63%), Query Frame = 1 

Query: 9   RREWTFSLASVVSSSSLIGPA-SDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPHDG 68
           R EW F+L + VSSSS    A SD++GV+EFDPSDS+ AT GIARKIR Y++ ++L    
Sbjct: 20  RCEWDFNLRTTVSSSSSPNAAVSDSIGVIEFDPSDSVFATGGIARKIRIYNIKSVLVDHP 79

Query: 69  TVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFERDE 128
            VA++DHS+  ++ ICTPAKLSSL+WKPG  GR+LGSGDYDGVVMEYDLEKKVP+FERDE
Sbjct: 80  VVAVVDHSKVCDYYICTPAKLSSLKWKPGTSGRVLGSGDYDGVVMEYDLEKKVPIFERDE 139

Query: 129 HGGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFNP 188
           HGGRRVWS+DYS  DP++GASGSDDGT+Q+WD RCDG  CV+ VQPS  RS VCCVEF+P
Sbjct: 140 HGGRRVWSVDYSKGDPVLGASGSDDGTMQMWDPRCDGGKCVSTVQPSASRSAVCCVEFHP 199

Query: 189 YGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKMW 248
           +G +LV  GCAD+KAY YD RKM + V+VF+GH KTVTY++F+D  T+V+A TDG LK+W
Sbjct: 200 FGSSLVAAGCADKKAYAYDVRKMVDPVLVFDGHRKTVTYIRFLDVDTLVTAGTDGCLKLW 259

Query: 249 KAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSE 292
              +       +RV+RTY+GHVN R+FVGLSVWR+GGL+GCGSE
Sbjct: 260 NVND-------SRVIRTYKGHVNNRNFVGLSVWRHGGLLGCGSE 296

[Close]
BLAST of CmoCh19G004280 vs. TrEMBL
Match: A0A162A408_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018192 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 2.7e-106
Identity = 189/290 (65.17%), Postives = 229/290 (78.97%), Query Frame = 1 

Query: 9   RREWTFSLASVVS-SSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPH-- 68
           R +W F+L++VVS SSS+IGP SD LGV EFDPSD+ +AT GIARKIR Y+  NLL +  
Sbjct: 37  RCDWDFALSTVVSNSSSVIGPVSDALGVTEFDPSDTFLATGGIARKIRIYNSENLLSNER 96

Query: 69  -DGTVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFE 128
            D  V  LDH+ A ++ ICTPAKLSSLRWKPG+G RI+GSGDYDGVVMEYDLE+K+PVFE
Sbjct: 97  SDQGVTFLDHASACDYYICTPAKLSSLRWKPGSGSRIIGSGDYDGVVMEYDLERKIPVFE 156

Query: 129 RDEHGGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVE 188
           RDEHGGRRVWS+DYS  +P +GASGSDDG++QVWD RC+G +CVA V PSV RSPVCCVE
Sbjct: 157 RDEHGGRRVWSMDYSHWNPTIGASGSDDGSMQVWDPRCEGGNCVAKVHPSVTRSPVCCVE 216

Query: 189 FNPYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSL 248
           FNP+GG+ +VVGCAD   YGYD R M+  VM  +GH KTVTY +F+D  T+V++ TDG L
Sbjct: 217 FNPFGGSSIVVGCADHVIYGYDVRIMSHPVMTLQGHDKTVTYARFMDPHTLVTSGTDGCL 276

Query: 249 KMWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           KMW  +E       +R+VRTY GHVN R F+GLSVWR+GGLI CGSE+ +
Sbjct: 277 KMWDTDE------PSRLVRTYRGHVNCRRFIGLSVWRSGGLICCGSENNQ 320

[Close]
BLAST of CmoCh19G004280 vs. TAIR10
Match: AT5G23730.1 (AT5G23730.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 372.5 bits (955), Expect = 2.5e-103
Identity = 181/293 (61.77%), Postives = 224/293 (76.45%), Query Frame = 1 

Query: 9   RREWTFSLASVVSSSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPHDGT 68
           R EW  SL++VVSSSS    ASD +G +EFDP+D+++ATAGI+RKIR Y L +LL ++  
Sbjct: 21  RYEWDLSLSTVVSSSS--SSASDVIGAIEFDPTDNIVATAGISRKIRFYGLPSLLRNNAV 80

Query: 69  ----VAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFE 128
               V+ +D + A E+ ICTPAKLSSLRW+PG+GGR++GSGDYDGVVMEYDLEK+ PVFE
Sbjct: 81  SGTGVSFVDQATACEYYICTPAKLSSLRWRPGSGGRVIGSGDYDGVVMEYDLEKRTPVFE 140

Query: 129 RDEHGGRRVWSLDYSTVD--PMVGASGSDDGTVQVWDTRCDGVDCVAVVQPS-VVRSPVC 188
           RDEHGGRRVWS+DY+       VGASGSDDGT+QVWD RC   + V VV+P+ + RS VC
Sbjct: 141 RDEHGGRRVWSVDYTRHGGASTVGASGSDDGTMQVWDPRCPPEESVGVVRPAGICRSAVC 200

Query: 189 CVEFNPYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTD 248
           CVEF+P GG  V VGCADRK Y YD RK+ +  +  +GH KTV+YV+F+DGGT+V+A TD
Sbjct: 201 CVEFDPSGGPAVAVGCADRKGYVYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVVTAGTD 260

Query: 249 GSLKMWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           G LK+W  E+G       RV+RTYEGHVN R+FVGLSVWRNG L GCGSE+ R
Sbjct: 261 GCLKLWSVEDG-------RVIRTYEGHVNNRNFVGLSVWRNGALFGCGSENNR 304

[Close]
BLAST of CmoCh19G004280 vs. TAIR10
Match: AT5G52250.1 (AT5G52250.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 320.5 bits (820), Expect = 1.1e-87
Identity = 166/295 (56.27%), Postives = 211/295 (71.53%), Query Frame = 1 

Query: 1   MGNESTPLRREWTFSLASVVSSSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLS 60
           M  E+ P R +W  SL++VVSS+S     SD +G +EFDP+  +IAT GIARKIR Y LS
Sbjct: 46  MNIENIP-RCDWDLSLSAVVSSAST---GSDAIGAIEFDPTGEIIATGGIARKIRSYRLS 105

Query: 61  NLLPHDGTVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKV 120
           +LL         DH  ASE  ICTPAKLSSL+W+P   GR++GSGDYDGVV EYD+EK+V
Sbjct: 106 SLLESRD-----DHVTASESYICTPAKLSSLKWRPDFSGRVIGSGDYDGVVTEYDVEKQV 165

Query: 121 PVFERDEHGGRRVWSLDYSTVD-PMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSP 180
           PV ERDEHGGRR+WS+DY+  +  ++GASGSDDGTVQ+WD R +G      V+P    + 
Sbjct: 166 PVSERDEHGGRRIWSVDYTLYNGSLIGASGSDDGTVQMWDPR-NGGTLEETVRPG-GGAA 225

Query: 181 VCCVEFNPYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSAS 240
           +C VEF+P+GG+ + VGCADR AY YD R++ + ++V +GH KTVTY +F+D  TIV+ S
Sbjct: 226 ICSVEFDPFGGSSIAVGCADRNAYVYDIRRLVDPLIVLDGHTKTVTYARFMDSHTIVTGS 285

Query: 241 TDGSLKMWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           TDGSLK W      D   G RVVRTY GHVN R+FVGLSVWR+GGL+  GSE+ +
Sbjct: 286 TDGSLKQW------DIDNGRRVVRTYRGHVNSRNFVGLSVWRHGGLVVSGSENNQ 323

[Close]
BLAST of CmoCh19G004280 vs. TAIR10
Match: AT2G32950.1 (AT2G32950.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 162.9 bits (411), Expect = 3.0e-40
Identity = 94/265 (35.47%), Postives = 149/265 (56.23%), Query Frame = 1 

Query: 29  ASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLL--PHDGTVAMLDHSRASEFCICTPA 88
           +++ +  +EFD  D L ATAG++R I+ +  S+++  P D    +++ S        T +
Sbjct: 370 SANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIVEMS--------TRS 429

Query: 89  KLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFERDEHGGRRVWSLDYSTVDPMVG 148
           KLS L W       I  S DY+G+V  +D+  +  + E +EH  +R WS+D+S  +P + 
Sbjct: 430 KLSCLSWNKHEKNHI-ASSDYEGIVTVWDVTTRQSLMEYEEHE-KRAWSVDFSRTEPSML 489

Query: 149 ASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFNPYGGALVVVGCADRKAYGYD 208
            SGSDD  V+VW TR +     A V    +++ +CCV++NP     + VG AD   + YD
Sbjct: 490 VSGSDDCKVKVWCTRQE-----ASVINIDMKANICCVKYNPGSSNYIAVGSADHHIHYYD 549

Query: 209 RRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKMWKAEEGGDGGGGARVVRTYE 268
            R +++ + VF GH K V+YVKF+    + SASTD +L++W  ++          VRT+ 
Sbjct: 550 LRNISQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDN-------LPVRTFR 609

Query: 269 GHVNGRSFVGLSVWRNGGLIGCGSE 292
           GH N ++FVGL+V  N   + CGSE
Sbjct: 610 GHTNEKNFVGLTV--NSEYLACGSE 610

[Close]
BLAST of CmoCh19G004280 vs. TAIR10
Match: AT2G46340.1 (AT2G46340.1 SPA (suppressor of phyA-105) protein family)

HSP 1 Score: 148.7 bits (374), Expect = 5.8e-36
Identity = 102/284 (35.92%), Postives = 141/284 (49.65%), Query Frame = 1 

Query: 14  FSLASVVSSSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLP-----HDGT 73
           F     + S  L+  AS    +  FDP +  IA AGI++KI+ +  +  +      H   
Sbjct: 701 FETCGTIRSGDLLNSASVVCSL-SFDPDEEHIAAAGISKKIKIFDFNAFMNESVGVHYPL 760

Query: 74  VAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFERDEH 133
           V M++ S+ S  C+C  + + +           L S DYDGVV  +D        +  EH
Sbjct: 761 VEMVNKSKLS--CVCWNSYIKNY----------LASTDYDGVVQIWDAGTGQGFSQYTEH 820

Query: 134 GGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFNPY 193
             +R WS+D+S  DP    SGSDD +V++W    +      +  P+     VCCV+F+ Y
Sbjct: 821 Q-KRAWSVDFSPSDPTKFVSGSDDCSVKLWSIN-EKRSLGTIWSPA----NVCCVQFSSY 880

Query: 194 GGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKMWK 253
              L+  G AD K Y YD R +        GH K V+YVKF+D  TIVSASTD SLK+W 
Sbjct: 881 SNHLLAFGSADYKVYCYDLRYVKTPWCTLAGHEKAVSYVKFMDSETIVSASTDNSLKLWN 940

Query: 254 AEEGGDGG-GGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSE 292
             +    G        TY+GH N ++FVGLSV    G I CGSE
Sbjct: 941 LNKTNSSGLSPGACSLTYKGHTNQKNFVGLSVL--DGYIACGSE 963

[Close]
BLAST of CmoCh19G004280 vs. TAIR10
Match: AT1G53090.1 (AT1G53090.1 SPA1-related 4)

HSP 1 Score: 144.8 bits (364), Expect = 8.3e-35
Identity = 91/263 (34.60%), Postives = 141/263 (53.61%), Query Frame = 1 

Query: 29  ASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPHDGTVAMLDHSRASEFCICTPAKL 88
           +S+ +  + FD      ATAG+ +KI+ +   +++     +    H    E  + + +KL
Sbjct: 483 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI----HYPVVE--LASRSKL 542

Query: 89  SSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFERDEHGGRRVWSLDYSTVDPMVGAS 148
           S + W      ++  S +++GVV  +D+ +   V E  EH  +RVWS+DYS+ DP + AS
Sbjct: 543 SGICWNSYIKSQV-ASSNFEGVVQVWDVARNQLVTEMKEHE-KRVWSIDYSSADPTLLAS 602

Query: 149 GSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFNPYGGALVVVGCADRKAYGYDRR 208
           GSDDG+V++W     GV    +      ++ +CCV+F    G  +  G AD K Y YD R
Sbjct: 603 GSDDGSVKLWSIN-QGVSIGTIK----TKANICCVQFPSETGRSLAFGSADHKVYYYDLR 662

Query: 209 KMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKMWKAEEGGDGGGGARVVRTYEGH 268
                +    GH KTV+YV+FVD  T+VS+STD +LK+W        G     + ++ GH
Sbjct: 663 NPKLPLCTMIGHHKTVSYVRFVDSSTLVSSSTDNTLKLWDLSM-SISGINETPLHSFMGH 722

Query: 269 VNGRSFVGLSVWRNGGLIGCGSE 292
            N ++FVGLSV  + G I  GSE
Sbjct: 723 TNVKNFVGLSV--SDGYIATGSE 729

[Close]
BLAST of CmoCh19G004280 vs. NCBI nr
Match: gi|778688229|ref|XP_004148378.2| (PREDICTED: WD repeat-containing protein RUP2-like [Cucumis sativus])

HSP 1 Score: 497.7 bits (1280), Expect = 1.4e-137
Identity = 245/293 (83.62%), Postives = 260/293 (88.74%), Query Frame = 1 

Query: 6   TPLRREWTFSLASVVSSSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLP- 65
           TPLR EW F+LASVVSS +    ASDTLGVVEFDPSDSLIATAGIARKIRGY L NLLP 
Sbjct: 27  TPLRCEWDFTLASVVSSPTNCA-ASDTLGVVEFDPSDSLIATAGIARKIRGYRLHNLLPQ 86

Query: 66  ---HDGTVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVP 125
              H+ T+  LDH+RAS+FCICTPAKLSSLRWKP A GRILGSGDYDGVVMEYDLE KVP
Sbjct: 87  DIDHNATITQLDHTRASDFCICTPAKLSSLRWKPNANGRILGSGDYDGVVMEYDLEMKVP 146

Query: 126 VFERDEHGGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVC 185
           +FERDEHGGRRVWS+DYSTV+P+VGASGSDDGTVQVWDTRC+  +CVAVVQPSVVRS VC
Sbjct: 147 IFERDEHGGRRVWSVDYSTVEPVVGASGSDDGTVQVWDTRCESGECVAVVQPSVVRSAVC 206

Query: 186 CVEFNPYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTD 245
           CVEFNP+GG LV VGCADRKAYGYDRRKM E V+VFEGH KTVTYVKFVDGGT+VSASTD
Sbjct: 207 CVEFNPFGGGLVAVGCADRKAYGYDRRKMREPVVVFEGHGKTVTYVKFVDGGTVVSASTD 266

Query: 246 GSLKMWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           GSLKMWK EE    GGGARVVRTYEGHVNGRSFVGLSVWR GGLIGCGSEDKR
Sbjct: 267 GSLKMWKTEE----GGGARVVRTYEGHVNGRSFVGLSVWREGGLIGCGSEDKR 314

[Close]
BLAST of CmoCh19G004280 vs. NCBI nr
Match: gi|694424471|ref|XP_009340009.1| (PREDICTED: WD repeat-containing protein RUP2-like [Pyrus x bretschneideri])

HSP 1 Score: 401.4 bits (1030), Expect = 1.4e-108
Identity = 190/294 (64.63%), Postives = 230/294 (78.23%), Query Frame = 1 

Query: 11  EWTFSLASVVSSSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPH----- 70
           EW FSL++VVSS    G AS+TLGV+EFDPS++++AT GIARKIR YSL +LLP+     
Sbjct: 43  EWDFSLSTVVSSKDCRGAASNTLGVIEFDPSNTVLATGGIARKIRVYSLKSLLPNYDNQS 102

Query: 71  -----DGTVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKV 130
                D    ++DH  A ++ ICTPAKLSSLRW+PG+ GR++ SGDYDGVV EYDL+ K+
Sbjct: 103 CGSSSDTMADLIDHVDACDYTICTPAKLSSLRWRPGSDGRVMASGDYDGVVTEYDLKTKL 162

Query: 131 PVFERDEHGGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPV 190
           P+FERDEHGGRRVWS+DYS  DP++GASGSDDGT+Q+WD RC+G DCVA VQPS  RSPV
Sbjct: 163 PIFERDEHGGRRVWSVDYSHSDPVLGASGSDDGTLQMWDPRCEGGDCVASVQPSDARSPV 222

Query: 191 CCVEFNPYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSAST 250
           CCVEF+P+GGAL+ VGCADRKAY YD RKM   VMVF GH KTVTYV+F+D  T+V+A T
Sbjct: 223 CCVEFDPFGGALLAVGCADRKAYAYDVRKMAGPVMVFYGHRKTVTYVRFLDSRTVVTAGT 282

Query: 251 DGSLKMWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           DG LK+W  E+       +R + TY+GH N RSFVGLSVWRNGGLIGCGSE+ R
Sbjct: 283 DGCLKLWDTED-------SRAIETYKGHANSRSFVGLSVWRNGGLIGCGSENNR 329

[Close]
BLAST of CmoCh19G004280 vs. NCBI nr
Match: gi|645257103|ref|XP_008234259.1| (PREDICTED: WD repeat-containing protein RUP2 [Prunus mume])

HSP 1 Score: 400.2 bits (1027), Expect = 3.1e-108
Identity = 188/288 (65.28%), Postives = 232/288 (80.56%), Query Frame = 1 

Query: 11  EWTFSLASVVSS--SSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPHDG- 70
           EW F+L+++VSS   S  G  S+T+GV+EFDPS++++AT GIARKIR YS ++LLP D  
Sbjct: 27  EWDFNLSTIVSSRGGSTGGAVSNTIGVIEFDPSNAVVATGGIARKIRVYSFNSLLPSDRF 86

Query: 71  -TVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFERD 130
               +LDH  A  + +CTPAKLSSLRW+PG+ GR+L SGDYDGVV EYDLE ++PVFERD
Sbjct: 87  CQANLLDHVTACAYTLCTPAKLSSLRWRPGSDGRVLCSGDYDGVVTEYDLETRLPVFERD 146

Query: 131 EHGGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFN 190
           EHGGRRVWS+DYS  DP++GASGSDDGT+Q+WD RCDG +CVA VQPS  R+PVCCVEF+
Sbjct: 147 EHGGRRVWSVDYSHSDPVLGASGSDDGTLQMWDPRCDGGECVASVQPSEARNPVCCVEFD 206

Query: 191 PYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKM 250
           P+GGALV VGCADR+AYGYD RKM + V+VF+GH KTVTYV+F+DG ++V+A TDG LK+
Sbjct: 207 PFGGALVAVGCADRRAYGYDMRKMVDPVLVFDGHRKTVTYVRFIDGCSVVTAGTDGCLKL 266

Query: 251 WKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           W  E+       +R +RTY+GH N RSFVGLSVWRNG LIGCGSED R
Sbjct: 267 WDTED-------SREIRTYKGHTNNRSFVGLSVWRNGELIGCGSEDNR 307

[Close]
BLAST of CmoCh19G004280 vs. NCBI nr
Match: gi|657969678|ref|XP_008376565.1| (PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Malus domestica])

HSP 1 Score: 399.1 bits (1024), Expect = 6.9e-108
Identity = 188/294 (63.95%), Postives = 233/294 (79.25%), Query Frame = 1 

Query: 11  EWTFSLASVVSSSSLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPH----- 70
           +W FSL++VVSS++  G AS+TLGV+EFDPS++++AT GIARKIRGYSL +LLP+     
Sbjct: 43  DWDFSLSTVVSSTACRGAASNTLGVIEFDPSNTVLATGGIARKIRGYSLKSLLPNYDNQI 102

Query: 71  -----DGTVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKV 130
                D    ++DH  A ++ ICTPAKLSSLRW+PG+ GR+L SGDYDGVV EYDLE K+
Sbjct: 103 CGSSSDSMADLIDHVDACDYTICTPAKLSSLRWRPGSDGRVLASGDYDGVVTEYDLETKL 162

Query: 131 PVFERDEHGGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPV 190
           P+FERDEHGGRRVWS+DYS  DP++GAS SDDGT+Q+WD R +G +CVA VQPS  R+PV
Sbjct: 163 PIFERDEHGGRRVWSVDYSHSDPVLGASASDDGTLQLWDPRHEGGNCVASVQPSDARNPV 222

Query: 191 CCVEFNPYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSAST 250
           CCVEF+P+GGAL+ VGCADRKAYGYD RKM   V VF+GH KTVTYV+F++G T+V+A T
Sbjct: 223 CCVEFDPFGGALLAVGCADRKAYGYDVRKMVSPVSVFDGHRKTVTYVRFLNGRTVVTAGT 282

Query: 251 DGSLKMWKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           DG LK+W  E+       +R +RTY+GH N RSFVGLSVWRNG LIGCGSE+ R
Sbjct: 283 DGCLKLWDTED-------SRAIRTYKGHANSRSFVGLSVWRNGELIGCGSENNR 329

[Close]
BLAST of CmoCh19G004280 vs. NCBI nr
Match: gi|596031988|ref|XP_007219483.1| (hypothetical protein PRUPE_ppa022067mg [Prunus persica])

HSP 1 Score: 398.3 bits (1022), Expect = 1.2e-107
Identity = 187/288 (64.93%), Postives = 231/288 (80.21%), Query Frame = 1 

Query: 11  EWTFSLASVVSSS--SLIGPASDTLGVVEFDPSDSLIATAGIARKIRGYSLSNLLPHDG- 70
           EW F+L+++VSSS  S  G  S+T+GV+EFDPS++++AT GIARKIR YS ++LLP D  
Sbjct: 27  EWDFNLSTIVSSSGGSTGGAVSNTIGVIEFDPSNAVVATGGIARKIRVYSFNSLLPSDRF 86

Query: 71  -TVAMLDHSRASEFCICTPAKLSSLRWKPGAGGRILGSGDYDGVVMEYDLEKKVPVFERD 130
               +LDH  A  + +CTPAKLSSLRW+PG+ GR+L SGDYDGVV EYDLE ++P+FERD
Sbjct: 87  CQANLLDHVTACAYTLCTPAKLSSLRWRPGSDGRVLCSGDYDGVVTEYDLETRLPIFERD 146

Query: 131 EHGGRRVWSLDYSTVDPMVGASGSDDGTVQVWDTRCDGVDCVAVVQPSVVRSPVCCVEFN 190
           EHGGRRVWS+DYS  DP +GASGSDDGT+Q+WD RCDG +CVA VQPS   +PVCC+EF+
Sbjct: 147 EHGGRRVWSVDYSHSDPFLGASGSDDGTLQMWDPRCDGGECVASVQPSKAGNPVCCLEFD 206

Query: 191 PYGGALVVVGCADRKAYGYDRRKMTEAVMVFEGHAKTVTYVKFVDGGTIVSASTDGSLKM 250
           P+GGALV VGCADR+AYGYD RKM + V+VF+GH KTVTYV+F+DG T+V+A TDG LK+
Sbjct: 207 PFGGALVAVGCADRRAYGYDMRKMVDPVLVFDGHRKTVTYVRFIDGCTVVTAGTDGCLKL 266

Query: 251 WKAEEGGDGGGGARVVRTYEGHVNGRSFVGLSVWRNGGLIGCGSEDKR 295
           W  E+       +R +RTY+GH N RSFVGLSVWRNG LIGCGSED R
Sbjct: 267 WGTED-------SREIRTYKGHTNNRSFVGLSVWRNGKLIGCGSEDNR 307

The following BLAST results are available for this feature:
BLAST of CmoCh19G004280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RUP2_ARATH4.4e-10261.77WD repeat-containing protein RUP2 OS=Arabidopsis thaliana GN=RUP2 PE=1 SV=1[more]
RUP1_ARATH2.0e-8656.27WD repeat-containing protein RUP1 OS=Arabidopsis thaliana GN=RUP1 PE=1 SV=1[more]
COP1_PEA3.1e-3935.85E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1[more]
COP1_ARATH5.2e-3935.47E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2[more]
RFWD2_HUMAN1.1e-3635.02E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1[more]
BLAST of CmoCh19G004280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LHK2_CUCSA1.0e-13783.62Ubiquitin ligase protein cop1 OS=Cucumis sativus GN=Csa_3G914590 PE=4 SV=1[more]
M5X3Q2_PRUPE8.2e-10864.93Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022067mg PE=4 SV=1[more]
A0A067F9Y4_CITSI1.1e-10765.14Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017773mg PE=4 SV=1[more]
V4S493_9ROSI1.1e-10765.14Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005222mg PE=4 SV=1[more]
A0A162A408_DAUCA2.7e-10665.17Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_018192 PE=4 SV=1[more]
BLAST of CmoCh19G004280 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23730.12.5e-10361.77 Transducin/WD40 repeat-like superfamily protein[more]
AT5G52250.11.1e-8756.27 Transducin/WD40 repeat-like superfamily protein[more]
AT2G32950.13.0e-4035.47 Transducin/WD40 repeat-like superfamily protein[more]
AT2G46340.15.8e-3635.92 SPA (suppressor of phyA-105) protein family[more]
AT1G53090.18.3e-3534.60 SPA1-related 4[more]
BLAST of CmoCh19G004280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688229|ref|XP_004148378.2|1.4e-13783.62PREDICTED: WD repeat-containing protein RUP2-like [Cucumis sativus][more]
gi|694424471|ref|XP_009340009.1|1.4e-10864.63PREDICTED: WD repeat-containing protein RUP2-like [Pyrus x bretschneideri][more]
gi|645257103|ref|XP_008234259.1|3.1e-10865.28PREDICTED: WD repeat-containing protein RUP2 [Prunus mume][more]
gi|657969678|ref|XP_008376565.1|6.9e-10863.95PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein RUP2 [Malus domesti... [more]
gi|596031988|ref|XP_007219483.1|1.2e-10764.93hypothetical protein PRUPE_ppa022067mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0008152 metabolic process
biological_process GO:0043496 regulation of protein homodimerization activity
biological_process GO:0010224 response to UV-B
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G004280.1CmoCh19G004280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatPFAMPF00400WD40coord: 127..159
score: 0.0025coord: 214..248
score: 5.
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 164..206
score: 0.73coord: 210..248
score: 3.0E-5coord: 78..115
score: 71.0coord: 118..159
score: 0.0036coord: 18..58
score:
IPR001680WD40 repeatPROFILEPS50082WD_REPEATS_2coord: 147..161
score: 8.771coord: 217..252
score: 10
IPR015943WD40/YVTN repeat-like-containing domainGENE3DG3DSA:2.130.10.10coord: 35..293
score: 1.9
IPR017986WD40-repeat-containing domainPROFILEPS50294WD_REPEATS_REGIONcoord: 147..257
score: 12
IPR017986WD40-repeat-containing domainunknownSSF50978WD40 repeat-likecoord: 30..293
score: 2.96
NoneNo IPR availablePANTHERPTHR22847WD40 REPEAT PROTEINcoord: 36..292
score: 5.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh19G004280Cucsa.313940Cucumber (Gy14) v1cgycmoB0867
CmoCh19G004280Cla001700Watermelon (97103) v1cmowmB465
CmoCh19G004280Csa3G914590Cucumber (Chinese Long) v2cmocuB502
CmoCh19G004280Lsi05G000010Bottle gourd (USVL1VR-Ls)cmolsiB475
CmoCh19G004280Cp4.1LG15g03210Cucurbita pepo (Zucchini)cmocpeB481
CmoCh19G004280MELO3C003316.2Melon (DHL92) v3.6.1cmomedB534
CmoCh19G004280CsaV3_3G050020Cucumber (Chinese Long) v3cmocucB0600
CmoCh19G004280Cla97C09G175760Watermelon (97103) v2cmowmbB530
CmoCh19G004280Bhi05G000451Wax gourdcmowgoB0645
CmoCh19G004280Carg25098Silver-seed gourdcarcmoB0300
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh19G004280Cucumber (Gy14) v2cgybcmoB350
CmoCh19G004280Cucumber (Gy14) v2cgybcmoB356
CmoCh19G004280Melon (DHL92) v3.6.1cmomedB530
CmoCh19G004280Silver-seed gourdcarcmoB0969
CmoCh19G004280Cucumber (Chinese Long) v3cmocucB0607
CmoCh19G004280Cucurbita moschata (Rifu)cmocmoB392
CmoCh19G004280Cucumber (Gy14) v1cgycmoB0868
CmoCh19G004280Cucurbita maxima (Rimu)cmacmoB508
CmoCh19G004280Cucurbita maxima (Rimu)cmacmoB603
CmoCh19G004280Wild cucumber (PI 183967)cmocpiB508
CmoCh19G004280Cucumber (Chinese Long) v2cmocuB507
CmoCh19G004280Melon (DHL92) v3.5.1cmomeB459
CmoCh19G004280Melon (DHL92) v3.5.1cmomeB463
CmoCh19G004280Watermelon (Charleston Gray)cmowcgB439
CmoCh19G004280Cucurbita pepo (Zucchini)cmocpeB503
CmoCh19G004280Bottle gourd (USVL1VR-Ls)cmolsiB472