CmoCh19G000830 (gene) Cucurbita moschata (Rifu)

NameCmoCh19G000830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr19 : 464484 .. 464768 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATCCAATTCGCTTTCATTTTAGCCATTTTTCTTGTTCTTGCCAACGTTCATCAGCTCCAAAGTTGCAGAATAATGAAAGTTGATCAACAAAAATGGTCGATGGTGCTTCAACAGTCGCTGCAGAGGGCGCCGGTTCCTCCTTCCGGCAAAGATGGCGGCACCACTATTCCAGTACCGCTCGGGGAAAGGGCCTTTGCCGGAAAATTCATGGCGCCACCGGCAGATGCATATCCAGATCATCTACTGATTCCTTCTGGCGTGGCCTTGAACACAAATTAA

mRNA sequence

ATGAAGATCCAATTCGCTTTCATTTTAGCCATTTTTCTTGTTCTTGCCAACGTTCATCAGCTCCAAAGTTGCAGAATAATGAAAGTTGATCAACAAAAATGGTCGATGGTGCTTCAACAGTCGCTGCAGAGGGCGCCGGTTCCTCCTTCCGGCAAAGATGGCGGCACCACTATTCCAGTACCGCTCGGGGAAAGGGCCTTTGCCGGAAAATTCATGGCGCCACCGGCAGATGCATATCCAGATCATCTACTGATTCCTTCTGGCGTGGCCTTGAACACAAATTAA

Coding sequence (CDS)

ATGAAGATCCAATTCGCTTTCATTTTAGCCATTTTTCTTGTTCTTGCCAACGTTCATCAGCTCCAAAGTTGCAGAATAATGAAAGTTGATCAACAAAAATGGTCGATGGTGCTTCAACAGTCGCTGCAGAGGGCGCCGGTTCCTCCTTCCGGCAAAGATGGCGGCACCACTATTCCAGTACCGCTCGGGGAAAGGGCCTTTGCCGGAAAATTCATGGCGCCACCGGCAGATGCATATCCAGATCATCTACTGATTCCTTCTGGCGTGGCCTTGAACACAAATTAA
BLAST of CmoCh19G000830 vs. TrEMBL
Match: A0A0A0LCY5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.7e-19
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 1  MKIQFAFILAIFLVLANVHQLQSCRIMKVDQQKWSM---VLQQSLQRAPVPPSGKDGGTT 60
          MKIQF+F+LAI ++LAN H LQSCR +K DQQ WS+   +LQQSLQR PVPPS K+G T 
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPLGERAFAGKFMAPPADAY 80
          IPVP+G+RAFAGK  A  A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

BLAST of CmoCh19G000830 vs. NCBI nr
Match: gi|700202793|gb|KGN57926.1| (hypothetical protein Csa_3G393150 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-18
Identity = 53/82 (64.63%), Postives = 63/82 (76.83%), Query Frame = 1

Query: 1  MKIQFAFILAIFLVLANVHQLQSCRIMKVDQQKWSM---VLQQSLQRAPVPPSGKDGGTT 60
          MKIQF+F+LAI ++LAN H LQSCR +K DQQ WS+   +LQQSLQR PVPPS K+G T 
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPLGERAFAGKFMAPPADAY 80
          IPVP+G+RAFAGK  A  A  Y
Sbjct: 61 IPVPVGQRAFAGKTSAALARNY 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LCY5_CUCSA8.7e-1964.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G393150 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700202793|gb|KGN57926.1|1.2e-1864.63hypothetical protein Csa_3G393150 [Cucumis sativus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh19G000830.1CmoCh19G000830.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 1..94
score: 6.6

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None