CmoCh17G012570 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh17G012570
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr17 : 9916279 .. 9916668 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGGAGATAAGCATTTGCCAGAGGTGGAACCGGTCATGATGGAGGAAGAGGAGGAGGAGGATGAAGAGCGAACTGTTTTGCTGCGAAAGTCATTTCGTCAACACGCCCAATCTAGCATTTCTTCCACTGACAGCGACGAAATGTTCTCCGGGAATTCCGAGGGACTGAAATTCGTCATTCGAGATGAACAACAACATCAACAACAACAAGAAGAAAAAGAAGGTTAGTTTCGGCTAATTACTCATCGCCGTTTCGATTTCTTTGTTCTCTTCCTGTTCTTGAAATTCGCTCCAGTCGCCATTCGAAAGTATAATTTGACATACTGATTCTGCAAGAGGCCGAGAGGTCCGGAACAGTCCGCCATTGTTGCGATACTGTTTCGATGA

mRNA sequence

ATGAACGGAGATAAGCATTTGCCAGAGGTGGAACCGGTCATGATGGAGGAAGAGGAGGAGGAGGATGAAGAGCGAACTGTTTTGCTGCGAAAGTCATTTCGTCAACACGCCCAATCTAGCATTTCTTCCACTGACAGCGACGAAATGTTCTCCGGGAATTCCGAGGGACTGAAATTCGTCATTCGAGATGAACAACAACATCAACAACAACAAGAAGAAAAAGAAGTTTCGGCTAATTACTCATCGCCGTTTCGATTTCTTTGTTCTCTTCCTGTTCTTGAAATTCGCTCCAGTCGCCATTCGAAAAGGCCGAGAGGTCCGGAACAGTCCGCCATTGTTGCGATACTGTTTCGATGA

Coding sequence (CDS)

ATGAACGGAGATAAGCATTTGCCAGAGGTGGAACCGGTCATGATGGAGGAAGAGGAGGAGGAGGATGAAGAGCGAACTGTTTTGCTGCGAAAGTCATTTCGTCAACACGCCCAATCTAGCATTTCTTCCACTGACAGCGACGAAATGTTCTCCGGGAATTCCGAGGGACTGAAATTCGTCATTCGAGATGAACAACAACATCAACAACAACAAGAAGAAAAAGAAGTTTCGGCTAATTACTCATCGCCGTTTCGATTTCTTTGTTCTCTTCCTGTTCTTGAAATTCGCTCCAGTCGCCATTCGAAAAGGCCGAGAGGTCCGGAACAGTCCGCCATTGTTGCGATACTGTTTCGATGA
Homology
[Close]
BLAST of CmoCh17G012570 vs. TrEMBL
Match: A0A0A0K9Z7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G352490 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-15
Identity = 60/98 (61.22%), Postives = 71/98 (72.45%), Query Frame = 1 

Query: 1  MNGDKHLPEVEPVMMEEEEE--EDEERTVLLRKSFRQHAQSSISS-TDSDEMFSGNSEGL 60
          M G+KH PE+EP M  EEEE  ++EER VLLRK+ RQHAQSSISS TDSDE+FSGNS+GL
Sbjct: 1  MIGEKHQPELEPEMTHEEEEAEDEEERNVLLRKTSRQHAQSSISSSTDSDEIFSGNSQGL 60

Query: 61 KFVIRDEQQHQQQQEEKEVSANYSSPFRFLCSLPVLEI 96
          +F+IRD QQHQQQ +    S N SS        PV E+
Sbjct: 61 QFIIRD-QQHQQQNQGTGYS-NGSSRLEIDGDHPVYEV 96

[Close]
BLAST of CmoCh17G012570 vs. NCBI nr
Match: gi|778727053|ref|XP_011659201.1| (PREDICTED: membrane protein of ER body-like protein isoform X4 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-15
Identity = 60/98 (61.22%), Postives = 71/98 (72.45%), Query Frame = 1 

Query: 1  MNGDKHLPEVEPVMMEEEEE--EDEERTVLLRKSFRQHAQSSISS-TDSDEMFSGNSEGL 60
          M G+KH PE+EP M  EEEE  ++EER VLLRK+ RQHAQSSISS TDSDE+FSGNS+GL
Sbjct: 1  MIGEKHQPELEPEMTHEEEEAEDEEERNVLLRKTSRQHAQSSISSSTDSDEIFSGNSQGL 60

Query: 61 KFVIRDEQQHQQQQEEKEVSANYSSPFRFLCSLPVLEI 96
          +F+IRD QQHQQQ +    S N SS        PV E+
Sbjct: 61 QFIIRD-QQHQQQNQGTGYS-NGSSRLEIDGDHPVYEV 96

[Close]
BLAST of CmoCh17G012570 vs. NCBI nr
Match: gi|449464120|ref|XP_004149777.1| (PREDICTED: uncharacterized protein LOC101210214 isoform X1 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-15
Identity = 60/98 (61.22%), Postives = 71/98 (72.45%), Query Frame = 1 

Query: 1  MNGDKHLPEVEPVMMEEEEE--EDEERTVLLRKSFRQHAQSSISS-TDSDEMFSGNSEGL 60
          M G+KH PE+EP M  EEEE  ++EER VLLRK+ RQHAQSSISS TDSDE+FSGNS+GL
Sbjct: 1  MIGEKHQPELEPEMTHEEEEAEDEEERNVLLRKTSRQHAQSSISSSTDSDEIFSGNSQGL 60

Query: 61 KFVIRDEQQHQQQQEEKEVSANYSSPFRFLCSLPVLEI 96
          +F+IRD QQHQQQ +    S N SS        PV E+
Sbjct: 61 QFIIRD-QQHQQQNQGTGYS-NGSSRLEIDGDHPVYEV 96

[Close]
BLAST of CmoCh17G012570 vs. NCBI nr
Match: gi|778727047|ref|XP_011659199.1| (PREDICTED: uncharacterized protein LOC101210214 isoform X2 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-15
Identity = 60/98 (61.22%), Postives = 71/98 (72.45%), Query Frame = 1 

Query: 1  MNGDKHLPEVEPVMMEEEEE--EDEERTVLLRKSFRQHAQSSISS-TDSDEMFSGNSEGL 60
          M G+KH PE+EP M  EEEE  ++EER VLLRK+ RQHAQSSISS TDSDE+FSGNS+GL
Sbjct: 1  MIGEKHQPELEPEMTHEEEEAEDEEERNVLLRKTSRQHAQSSISSSTDSDEIFSGNSQGL 60

Query: 61 KFVIRDEQQHQQQQEEKEVSANYSSPFRFLCSLPVLEI 96
          +F+IRD QQHQQQ +    S N SS        PV E+
Sbjct: 61 QFIIRD-QQHQQQNQGTGYS-NGSSRLEIDGDHPVYEV 96

[Close]
BLAST of CmoCh17G012570 vs. NCBI nr
Match: gi|659116405|ref|XP_008458057.1| (PREDICTED: uncharacterized protein LOC103497596 isoform X2 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 8.3e-12
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 1  MNGDKHLPEVEPVMMEEEEEE---DEERTVLLRKSFRQHAQSSISS-TDSDEMFSGNSEG 60
          MN DK  PE+EP M +E+EEE   +EE  VLLRK+ R HAQS+ SS TDSDEMFSGNS+G
Sbjct: 1  MNEDKLHPELEPQMTQEQEEEAEYEEEPHVLLRKTSRHHAQSTFSSSTDSDEMFSGNSQG 60

Query: 61 LKFVIRDEQQHQQQQEEKEVSANYSSPFRFLCSLPVLEI 96
          L+FVIRD+Q   QQQ      +N SS        PV E+
Sbjct: 61 LQFVIRDQQ--LQQQNRGTGYSNGSSRLEIEDDHPVYEV 97

[Close]
BLAST of CmoCh17G012570 vs. NCBI nr
Match: gi|659116403|ref|XP_008458056.1| (PREDICTED: uncharacterized protein LOC103497596 isoform X1 [Cucumis melo])

HSP 1 Score: 78.6 bits (192), Expect = 8.3e-12
Identity = 55/99 (55.56%), Postives = 66/99 (66.67%), Query Frame = 1 

Query: 1  MNGDKHLPEVEPVMMEEEEEE---DEERTVLLRKSFRQHAQSSISS-TDSDEMFSGNSEG 60
          MN DK  PE+EP M +E+EEE   +EE  VLLRK+ R HAQS+ SS TDSDEMFSGNS+G
Sbjct: 1  MNEDKLHPELEPQMTQEQEEEAEYEEEPHVLLRKTSRHHAQSTFSSSTDSDEMFSGNSQG 60

Query: 61 LKFVIRDEQQHQQQQEEKEVSANYSSPFRFLCSLPVLEI 96
          L+FVIRD+Q   QQQ      +N SS        PV E+
Sbjct: 61 LQFVIRDQQ--LQQQNRGTGYSNGSSRLEIEDDHPVYEV 97

The following BLAST results are available for this feature:
BLAST of CmoCh17G012570 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012570 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9Z7_CUCSA2.5e-1561.22Uncharacterized protein OS=Cucumis sativus GN=Csa_7G352490 PE=4 SV=1[more]
BLAST of CmoCh17G012570 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh17G012570 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778727053|ref|XP_011659201.1|3.6e-1561.22PREDICTED: membrane protein of ER body-like protein isoform X4 [Cucumis sativus][more]
gi|449464120|ref|XP_004149777.1|3.6e-1561.22PREDICTED: uncharacterized protein LOC101210214 isoform X1 [Cucumis sativus][more]
gi|778727047|ref|XP_011659199.1|3.6e-1561.22PREDICTED: uncharacterized protein LOC101210214 isoform X2 [Cucumis sativus][more]
gi|659116405|ref|XP_008458057.1|8.3e-1255.56PREDICTED: uncharacterized protein LOC103497596 isoform X2 [Cucumis melo][more]
gi|659116403|ref|XP_008458056.1|8.3e-1255.56PREDICTED: uncharacterized protein LOC103497596 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh17G012570.1CmoCh17G012570.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh17G012570Cla014912Watermelon (97103) v1cmowmB325
CmoCh17G012570Cla97C09G171360Watermelon (97103) v2cmowmbB373
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh17G012570Cucurbita moschata (Rifu)cmocmoB311
CmoCh17G012570Cucumber (Gy14) v1cgycmoB0134
CmoCh17G012570Cucurbita maxima (Rimu)cmacmoB353
CmoCh17G012570Cucurbita maxima (Rimu)cmacmoB888
CmoCh17G012570Wild cucumber (PI 183967)cmocpiB377
CmoCh17G012570Cucumber (Chinese Long) v2cmocuB374
CmoCh17G012570Melon (DHL92) v3.5.1cmomeB314
CmoCh17G012570Watermelon (Charleston Gray)cmowcgB302
CmoCh17G012570Cucurbita pepo (Zucchini)cmocpeB335
CmoCh17G012570Cucurbita pepo (Zucchini)cmocpeB343
CmoCh17G012570Bottle gourd (USVL1VR-Ls)cmolsiB334
CmoCh17G012570Cucumber (Gy14) v2cgybcmoB903
CmoCh17G012570Melon (DHL92) v3.6.1cmomedB360
CmoCh17G012570Silver-seed gourdcarcmoB0021
CmoCh17G012570Silver-seed gourdcarcmoB0112
CmoCh17G012570Cucumber (Chinese Long) v3cmocucB0450
CmoCh17G012570Wax gourdcmowgoB0492