CmoCh12G001300 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh12G001300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCytochrome c oxidase subunit 6b-1-like protein
LocationCmo_Chr12 : 801986 .. 804870 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAGAGTTTCTTCCTCCTTCGTTTGCCCTTCCTGCTGCCGCCTCTGTTGTCCAATCGTTGCGTTTCTAGCTGCAACTGGAGCGGATCGCTTCTTCTTCTTTCATCCATGGCGGAAGCGCAGAGCGAAAAAGCCCCGTCCTTAGCTGAGGTTTTTTTTAAGTTTTTTTTTTTTTAGAGCTTTAACAGTCTCGAATTTCTTCGTAAATCCTAAATCTTTGTTTTAGCTTCGTTTTTCCTTCTTTTTTACAATCTAGATCGATTTAGGATTGATTTTGATAGATCGAATGTTATACAGCAGGAATTCTTCAATTATGAAGATACGTGGTGTTTTTTTCTGTTGTAAATTCGAACTTCTTAGTGTTGAGGAAATAATTGAAGAACGGTAGTAAATTCTCTGGATTAGATCCCCCGGTTCCATATGAAATAATACTGAGTTTTTTTAGCATGATTGGATTGCCAGGTTGTTCACCTTCGAGTTCTGGTGGGTTTAATTTACTGTCTGTTTATTATTTGCTGTTAAAAGATCAATGTGTTTCACCAAGTTTGAAAGATCTTTATCAACGAGCTCAACCTTTTGCCTGATTTTGCATTGGAATGGAAGCTGAGAATCATTAAGGATCATATCTTCCCGCTGAAAATCGTTTCTTGATTTAGCTATGGCTTCACCGAACTGCTCTGTAGAAAAGAGAGAAGAAAAGAAACGGGCTTGAGCTGCTTGGTTTACGTGAGGAATCTCAATGAATTCAAAGTTAATATTTAGTGAGTTTTATGTGACATTCCACAACGGTTAGAAAGGGGAACAAAACATTCTTTATAAGGGTGTGGAAACCTCTCCTTATAGATGTGATTAAAACTGTGAGATTGACAGCAATACATAACAGGCCGAAGCGGACAATATTTGCTTGCGGTGGGTTTGAGCGGTTATAAATGTTATCAAATCTAGGCACCGAACGGTGTGCCAACGAGGATGCTAGGTCCCAAAGGTCCCAAAAGAAGGTGGATTGTGAGATCCCACATTGATTGGGGGAGGGGAACGAAACATTATTTATAAGGGTGTGGAAACCTCTCTCTAGTAGACGTGTTTTAAAACCGTGAGGCTAACTGCGATACGTAACGGGCCGAAGCGGACAATATCCGCTAGCGATGGGCTTGAGCTGTTACATTTTACCATGTGACTTCTCTACGATGATTTGTCATGCTCATCTAGAGGAACATTTCATAGAGACTGACCTCTTTTCTTTTACAAAGTCAGTATCATAATGTTCATATTTGAGAATTGGGGATAACTTTCTGTTAATTTGGCTTTCAGCAATATTCATTGGAAGATAAAGTGGAGAAGGTGGATATAGCAGAGCCCTCTGAAGTGAAAGAGGTAGAGAACTCAGAAAATGTTCCTCCTCCTGCAGAAGTTGTTGTGAAGAATGACGACCCACCTGTTGAAGCCGATGCTGCTGATCAAGGCGGTGACAACACTCCTGTCGATGAAAACAATGAAGATGCATCGGCAGCTGCTGCTGAGCAAGAAAGCAGCGGAGCCAGAGACGAGGAAAATTCTGGTGATCAAGAAAGCAGCAATGAGGCACCTGAGATTAAGGTTGTTACTGACACTGATGATCAACAATGCTATCGTTCGTTTTTTAATTCATGACATTATTAAGGCATCTCTTAGTTTGTTTGTTCATATTATTTGGTTTGCTCATTTGCAGCTTGAAACAGCTCCAGCAGATTTCCGGTTCCCTACTACAAATCAAACTAGGCATTGCTTCACTCGCTATATTGAGTACCATAGGTAATTTTTAATATTCTTTTCTTCATTTCTTGTCTCTTCTTAGGCCTTATTTGATAAGCTTCTGAATCTTGAGAATTAATCTTATAATTACTAGTGTTAAGCCTGTAGATTTCATTGTCTTTGCTGTTGCTATTGTTTTGGTCTAAGAATTCAAATGTTTCTTAAAAGTAAAAAACAAGGCAAATGTGTGTCTTTACTATTGTTTTGGCCACGAATTCAAATGTTTCTTAAAAGTCGAAAACAAGTCAAATATACGTCTTTGCTATTGTCTTGGCCAAGAATTCAAATGTTTCTTAAACGTCGAAAACAAGGCAAATGTATGTCTTTCCTATTGTTTTGTCCATGAATTCAGATGTTTCTTAAAAGTCGAACACAAGGCAATTGTATATCTTTGCTATTGTTTTGGCCAAGGATTCAAATGTTTCTTAAACGTCGCAAGTAAAATATACGTCTTTGCTATTCTTTTGGTCAAGAATTCATATGTTTCTTAAACGTAAAAAACAAGGTAAATGTACGTCTTTTCTATTGTTTTGACCCAGAATTCAAATGGTTAGCTGAAGCTTCTTTGTGATGCGTACAGATGCATACAAGCGAAAGGGGAAGGTGCTCCAGAGTGTGACAAATTTGCAAAATACTATCGTTCTCTATGCCCAACTGAATGGGTATGCATTCAAATGACTCGATGTGTATGCGTGTGCGTGTGCGTGTTTCATTTCATTACTAAAGCTGTGTGTTGTGATAATTGTTGCAGGTAGAGAGGTGGAATGAGCAAAGGGAGAACGGCACCTTCCCAGGTCCACTGTAGGAGTTAAGCCACACGCTGCCCTTAAATTCCAAATAAACTATCTCCTCAAACAATTGAGTTCATAATTTCCGGCTGGTTTTTGGTCTTTTATTCAAAATCCAATTTCAGCCAAGTTTGTTGATGCGACTATCCCCTGTTTCTTCAATGATTATGTTCCAATCCAATAAGACAATGAAGAAATTTGATCTCTTTTTTCTCATTGCATACTTTTGACGATCATGAATGAAGAAATTTAAAGATCAAACTCAATTTGATTGGAAGAATCGATGAACTACGCATTTGAACTTCAC

mRNA sequence

GTTAGAGTTTCTTCCTCCTTCGTTTGCCCTTCCTGCTGCCGCCTCTGTTGTCCAATCGTTGCGTTTCTAGCTGCAACTGGAGCGGATCGCTTCTTCTTCTTTCATCCATGGCGGAAGCGCAGAGCGAAAAAGCCCCGTCCTTAGCTGAGCAATATTCATTGGAAGATAAAGTGGAGAAGGTGGATATAGCAGAGCCCTCTGAAGTGAAAGAGGTAGAGAACTCAGAAAATGTTCCTCCTCCTGCAGAAGTTGTTGTGAAGAATGACGACCCACCTGTTGAAGCCGATGCTGCTGATCAAGGCGGTGACAACACTCCTGTCGATGAAAACAATGAAGATGCATCGGCAGCTGCTGCTGAGCAAGAAAGCAGCGGAGCCAGAGACGAGGAAAATTCTGGTGATCAAGAAAGCAGCAATGAGGCACCTGAGATTAAGCTTGAAACAGCTCCAGCAGATTTCCGATGCATACAAGCGAAAGGGGAAGGTGCTCCAGAGTGTGACAAATTTGCAAAATACTATCGTTCTCTATGCCCAACTGAATGGGTAGAGAGGTGGAATGAGCAAAGGGAGAACGGCACCTTCCCAGGTCCACTGTAGGAGTTAAGCCACACGCTGCCCTTAAATTCCAAATAAACTATCTCCTCAAACAATTGAGTTCATAATTTCCGGCTGGTTTTTGGTCTTTTATTCAAAATCCAATTTCAGCCAAGTTTGTTGATGCGACTATCCCCTGTTTCTTCAATGATTATGTTCCAATCCAATAAGACAATGAAGAAATTTGATCTCTTTTTTCTCATTGCATACTTTTGACGATCATGAATGAAGAAATTTAAAGATCAAACTCAATTTGATTGGAAGAATCGATGAACTACGCATTTGAACTTCAC

Coding sequence (CDS)

ATGGCGGAAGCGCAGAGCGAAAAAGCCCCGTCCTTAGCTGAGCAATATTCATTGGAAGATAAAGTGGAGAAGGTGGATATAGCAGAGCCCTCTGAAGTGAAAGAGGTAGAGAACTCAGAAAATGTTCCTCCTCCTGCAGAAGTTGTTGTGAAGAATGACGACCCACCTGTTGAAGCCGATGCTGCTGATCAAGGCGGTGACAACACTCCTGTCGATGAAAACAATGAAGATGCATCGGCAGCTGCTGCTGAGCAAGAAAGCAGCGGAGCCAGAGACGAGGAAAATTCTGGTGATCAAGAAAGCAGCAATGAGGCACCTGAGATTAAGCTTGAAACAGCTCCAGCAGATTTCCGATGCATACAAGCGAAAGGGGAAGGTGCTCCAGAGTGTGACAAATTTGCAAAATACTATCGTTCTCTATGCCCAACTGAATGGGTAGAGAGGTGGAATGAGCAAAGGGAGAACGGCACCTTCCCAGGTCCACTGTAG
Homology
[Close]
BLAST of CmoCh12G001300 vs. Swiss-Prot
Match: CX6B1_ARATH (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.6e-27
Identity = 82/195 (42.05%), Postives = 111/195 (56.92%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEV-------------ENSENVPPPAE 60
           MA+A + + PSL+EQY LE +V++   A+P EVKEV             E ++   P  E
Sbjct: 1   MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKEESPVEE 60

Query: 61  VVVKNDDPPVEADAADQGGDNTPVD-ENNEDASAAAAEQESSGARDEENSGDQESSNEAP 120
            V   ++    A  + +     P   E+N + + AAAE+ +     +EN+ ++ +     
Sbjct: 61  AVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENN-----DENASEEVAEETPD 120

Query: 121 EIKLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVE 163
           EIKLETAPADFR                   C+ AKG+ APECDKFAK+YRSLCP+EWV+
Sbjct: 121 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 180

[Close]
BLAST of CmoCh12G001300 vs. Swiss-Prot
Match: CX6B3_ARATH (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-18
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 1 

Query: 107 EIKLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVE 163
           EI+L+TAPADFR                   C  AKGE A EC++FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

[Close]
BLAST of CmoCh12G001300 vs. Swiss-Prot
Match: CX6B2_ARATH (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.4e-17
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 107 EIKLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVE 163
           EI+L+TAPADFR                   C  AKGE + +C++FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

[Close]
BLAST of CmoCh12G001300 vs. Swiss-Prot
Match: COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 4.6e-13
Identity = 31/46 (67.39%), Postives = 36/46 (78.26%), Query Frame = 1 

Query: 117 FRCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL 163
           FRCI+AKGE    C +F   Y+SLCP EWVERW+EQRENGTFP P+
Sbjct: 41  FRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQRENGTFPAPI 86

[Close]
BLAST of CmoCh12G001300 vs. Swiss-Prot
Match: COX12_YEAST (Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COX12 PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 20/45 (44.44%), Postives = 29/45 (64.44%), Query Frame = 1 

Query: 118 RCIQAKGEGAPECDKFAKYYRSLCPTEWVERWNEQRENGTFPGPL 163
           +C+  KGE    C  F K Y +LCP +W+E+W++QRE G F G +
Sbjct: 36  KCVNMKGEDFAPCKVFWKTYNALCPLDWIEKWDDQREKGIFAGDI 80

[Close]
BLAST of CmoCh12G001300 vs. TrEMBL
Match: A0A0A0LNV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G369100 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.4e-53
Identity = 127/197 (64.47%), Postives = 144/197 (73.10%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQS++ PSL+EQYSL++K EKVDI +PSEVKEVENSEN  P AEVVVKND+PPVEA 
Sbjct: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAP-AEVVVKNDEPPVEA- 60

Query: 61  AADQGGDNTPVDENNEDASAAA----------------AEQESSGARDEENSGDQESSNE 120
            ADQ  D  P +E+N D+SAAA                AE+ESSGA +EENSGDQES++E
Sbjct: 61  VADQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDE 120

Query: 121 APEIKLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEW 163
            PEIKLETAP DFR                   C QAKGEGAPEC+KFAKYYRSLCP+EW
Sbjct: 121 RPEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEW 180

[Close]
BLAST of CmoCh12G001300 vs. TrEMBL
Match: A0A067GN17_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029538mg PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.8e-35
Identity = 100/195 (51.28%), Postives = 120/195 (61.54%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIA-EPSEVKEVENS-------------ENVPPPA 60
           MAEAQS+K PSLAE Y LE   EK D+A +P EVKEVE++             E  P  A
Sbjct: 1   MAEAQSDKTPSLAEDYLLEK--EKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAA 60

Query: 61  EVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQESSNEAP 120
            V    +D P  A        +   +++  D + AAAE ESS   +EENSGDQE+S E P
Sbjct: 61  AVEESKEDAPAPAPEESTEASSASPEDSTSDTAPAAAE-ESSETTEEENSGDQEASEETP 120

Query: 121 EIKLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVE 163
           +IKLETAPADFR                   C+ AKGEGAPECDKFAKYYR+LCP++W+E
Sbjct: 121 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIE 180

[Close]
BLAST of CmoCh12G001300 vs. TrEMBL
Match: V4SHN7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002573mg PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.9e-35
Identity = 101/196 (51.53%), Postives = 122/196 (62.24%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIA-EPSEVKEVENS-------------ENVPPPA 60
           MAEAQS+K PSLAE Y LE   EK D+A +P  VKEVE++             E  P  A
Sbjct: 1   MAEAQSDKTPSLAEDYLLEK--EKQDVATKPVVVKEVESAVTASSVEGATDKVEETPAAA 60

Query: 61  EVVVKNDDPPV-EADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQESSNEA 120
            V    +D P   A+ + +    +P D  ++ A AAA  +ESS   +EENSGDQE+S E 
Sbjct: 61  AVEESKEDAPAPAAEESTEASSASPEDSTSDTAPAAA--EESSETTEEENSGDQEASEET 120

Query: 121 PEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWV 163
           PEIKLETAPADF                   RC+ AKGEGAPECDKFAKYYR+LCP++W+
Sbjct: 121 PEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWI 180

[Close]
BLAST of CmoCh12G001300 vs. TrEMBL
Match: A0A061FF28_THECC (Cytochrome C oxidase polypeptide vib, putative OS=Theobroma cacao GN=TCM_034860 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.5e-34
Identity = 101/192 (52.60%), Postives = 119/192 (61.98%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIA-EPSEVKEVENSENVPPPAEVVVKNDDPPVE- 60
           MAEAQ++K  SL+EQY L++K EK D+A +P+EVKEVE+  N      V+ K ++ P   
Sbjct: 1   MAEAQTDKPLSLSEQYLLKEKEEKSDVATKPAEVKEVESPVNAASEEVVIEKVEETPASP 60

Query: 61  ---------ADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQESSNEAPEIK 120
                    A A +  G N   + + EDA AAA   ESS    EENSGD E   E PEIK
Sbjct: 61  VEETTVAPPAAAEESTGANPATENSGEDAPAAA--DESSEPTAEENSGDAE---ETPEIK 120

Query: 121 LETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVERWN 163
           LETAPADFR                   C+ AKGEGAPECDKFAKYYRSLCP EW++RWN
Sbjct: 121 LETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRSLCPGEWIDRWN 180

[Close]
BLAST of CmoCh12G001300 vs. TrEMBL
Match: A0A0B0NE93_GOSAR (Cytochrome c oxidase subunit 6b-1-like protein OS=Gossypium arboreum GN=F383_16852 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-33
Identity = 100/193 (51.81%), Postives = 120/193 (62.18%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIA-EPSEVKEVENSEN----------VPPPAEVV 60
           MAEAQ+E  PSL+EQYSL++K EK D+A + ++ +EVENS N          V  PA +V
Sbjct: 1   MAEAQTETPPSLSEQYSLKEKAEKSDVATKAADAEEVENSANTSSKEVVTEEVETPAPLV 60

Query: 61  VKNDDPPVEADAADQGGDNTPVDENN-EDASAAAAEQESSGARDEENSGDQESSNEAPEI 120
              + PP     A++  +  PV EN+ EDA  AA   E S  R EE+SGD E   E PEI
Sbjct: 61  ESTEVPPA---VAEENTEANPVAENSVEDAQVAA---EESNERTEESSGDAE---ETPEI 120

Query: 121 KLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVERW 163
           KLETAPADFR                   C+ AKGE A ECDKFAKYYR+LCP EW++RW
Sbjct: 121 KLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEDASECDKFAKYYRALCPGEWIDRW 180

[Close]
BLAST of CmoCh12G001300 vs. TAIR10
Match: AT1G22450.1 (AT1G22450.1 cytochrome C oxidase 6B)

HSP 1 Score: 122.1 bits (305), Expect = 3.2e-28
Identity = 82/195 (42.05%), Postives = 111/195 (56.92%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEV-------------ENSENVPPPAE 60
           MA+A + + PSL+EQY LE +V++   A+P EVKEV             E ++   P  E
Sbjct: 1   MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKEESPVEE 60

Query: 61  VVVKNDDPPVEADAADQGGDNTPVD-ENNEDASAAAAEQESSGARDEENSGDQESSNEAP 120
            V   ++    A  + +     P   E+N + + AAAE+ +     +EN+ ++ +     
Sbjct: 61  AVSVVEEKSESAPESTEVASEAPAAAEDNAEETPAAAEENN-----DENASEEVAEETPD 120

Query: 121 EIKLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVE 163
           EIKLETAPADFR                   C+ AKG+ APECDKFAK+YRSLCP+EWV+
Sbjct: 121 EIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVD 180

[Close]
BLAST of CmoCh12G001300 vs. TAIR10
Match: AT4G28060.1 (AT4G28060.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 92.4 bits (228), Expect = 2.7e-19
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 1 

Query: 107 EIKLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVE 163
           EI+L+TAPADFR                   C  AKGE A EC++FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

[Close]
BLAST of CmoCh12G001300 vs. TAIR10
Match: AT5G57815.1 (AT5G57815.1 Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.3e-18
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1 

Query: 107 EIKLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVE 163
           EI+L+TAPADFR                   C  AKGE + +C++FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

[Close]
BLAST of CmoCh12G001300 vs. NCBI nr
Match: gi|449469835|ref|XP_004152624.1| (PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis sativus])

HSP 1 Score: 216.5 bits (550), Expect = 3.5e-53
Identity = 127/197 (64.47%), Postives = 144/197 (73.10%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQS++ PSL+EQYSL++K EKVDI +PSEVKEVENSEN  P AEVVVKND+PPVEA 
Sbjct: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAP-AEVVVKNDEPPVEA- 60

Query: 61  AADQGGDNTPVDENNEDASAAA----------------AEQESSGARDEENSGDQESSNE 120
            ADQ  D  P +E+N D+SAAA                AE+ESSGA +EENSGDQES++E
Sbjct: 61  VADQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDE 120

Query: 121 APEIKLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEW 163
            PEIKLETAP DFR                   C QAKGEGAPEC+KFAKYYRSLCP+EW
Sbjct: 121 RPEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEW 180

[Close]
BLAST of CmoCh12G001300 vs. NCBI nr
Match: gi|659088206|ref|XP_008444857.1| (PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis melo])

HSP 1 Score: 214.2 bits (544), Expect = 1.7e-52
Identity = 127/192 (66.15%), Postives = 142/192 (73.96%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIAEPSEVKEVENSENVPPPAEVVVKNDDPPVEAD 60
           MAEAQSE+  SLAEQYSL++K EKVDI  PSEVKEVEN+EN  P AEVVVKND+PPVEAD
Sbjct: 1   MAEAQSEQTLSLAEQYSLKEKEEKVDIPLPSEVKEVENAENAAP-AEVVVKNDEPPVEAD 60

Query: 61  AADQGGDNTPVDENN-----------EDASAAAAEQESSGARDEENSGDQESSNEAPEIK 120
           A DQ  DN P +E+            E+ S AAAE+ESSGA +EENSGDQES++E PEIK
Sbjct: 61  A-DQSSDNPPAEESPAVEDSETGPAAENDSGAAAEEESSGAGEEENSGDQESTDEQPEIK 120

Query: 121 LETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVERWN 163
           LETAP DFR                   C QAKGEGAPEC+KFAKYYRSLCP+EWVE+WN
Sbjct: 121 LETAPVDFRFPTTNQTRHCFTRYIEYHRCTQAKGEGAPECEKFAKYYRSLCPSEWVEKWN 180

[Close]
BLAST of CmoCh12G001300 vs. NCBI nr
Match: gi|568837087|ref|XP_006472562.1| (PREDICTED: cytochrome c oxidase subunit 6b-1 [Citrus sinensis])

HSP 1 Score: 157.1 bits (396), Expect = 2.5e-35
Identity = 100/195 (51.28%), Postives = 120/195 (61.54%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIA-EPSEVKEVENS-------------ENVPPPA 60
           MAEAQS+K PSLAE Y LE   EK D+A +P EVKEVE++             E  P  A
Sbjct: 1   MAEAQSDKTPSLAEDYLLEK--EKQDVATKPVEVKEVESAVTASSVEGATDKVEETPAAA 60

Query: 61  EVVVKNDDPPVEADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQESSNEAP 120
            V    +D P  A        +   +++  D + AAAE ESS   +EENSGDQE+S E P
Sbjct: 61  AVEESKEDAPAPAPEESTEASSASPEDSTSDTAPAAAE-ESSETTEEENSGDQEASEETP 120

Query: 121 EIKLETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVE 163
           +IKLETAPADFR                   C+ AKGEGAPECDKFAKYYR+LCP++W+E
Sbjct: 121 DIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIE 180

[Close]
BLAST of CmoCh12G001300 vs. NCBI nr
Match: gi|567882749|ref|XP_006433933.1| (hypothetical protein CICLE_v10002573mg [Citrus clementina])

HSP 1 Score: 156.0 bits (393), Expect = 5.6e-35
Identity = 101/196 (51.53%), Postives = 122/196 (62.24%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIA-EPSEVKEVENS-------------ENVPPPA 60
           MAEAQS+K PSLAE Y LE   EK D+A +P  VKEVE++             E  P  A
Sbjct: 1   MAEAQSDKTPSLAEDYLLEK--EKQDVATKPVVVKEVESAVTASSVEGATDKVEETPAAA 60

Query: 61  EVVVKNDDPPV-EADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQESSNEA 120
            V    +D P   A+ + +    +P D  ++ A AAA  +ESS   +EENSGDQE+S E 
Sbjct: 61  AVEESKEDAPAPAAEESTEASSASPEDSTSDTAPAAA--EESSETTEEENSGDQEASEET 120

Query: 121 PEIKLETAPADF-------------------RCIQAKGEGAPECDKFAKYYRSLCPTEWV 163
           PEIKLETAPADF                   RC+ AKGEGAPECDKFAKYYR+LCP++W+
Sbjct: 121 PEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWI 180

[Close]
BLAST of CmoCh12G001300 vs. NCBI nr
Match: gi|590597798|ref|XP_007018715.1| (Cytochrome C oxidase polypeptide vib, putative [Theobroma cacao])

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 101/192 (52.60%), Postives = 119/192 (61.98%), Query Frame = 1 

Query: 1   MAEAQSEKAPSLAEQYSLEDKVEKVDIA-EPSEVKEVENSENVPPPAEVVVKNDDPPVE- 60
           MAEAQ++K  SL+EQY L++K EK D+A +P+EVKEVE+  N      V+ K ++ P   
Sbjct: 1   MAEAQTDKPLSLSEQYLLKEKEEKSDVATKPAEVKEVESPVNAASEEVVIEKVEETPASP 60

Query: 61  ---------ADAADQGGDNTPVDENNEDASAAAAEQESSGARDEENSGDQESSNEAPEIK 120
                    A A +  G N   + + EDA AAA   ESS    EENSGD E   E PEIK
Sbjct: 61  VEETTVAPPAAAEESTGANPATENSGEDAPAAA--DESSEPTAEENSGDAE---ETPEIK 120

Query: 121 LETAPADFR-------------------CIQAKGEGAPECDKFAKYYRSLCPTEWVERWN 163
           LETAPADFR                   C+ AKGEGAPECDKFAKYYRSLCP EW++RWN
Sbjct: 121 LETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRSLCPGEWIDRWN 180

The following BLAST results are available for this feature:
BLAST of CmoCh12G001300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CX6B1_ARATH5.6e-2742.05Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1[more]
CX6B3_ARATH4.8e-1857.33Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2[more]
CX6B2_ARATH2.4e-1754.67Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1[more]
COX12_SCHPO4.6e-1367.39Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC ... [more]
COX12_YEAST1.7e-0744.44Cytochrome c oxidase subunit 6B OS=Saccharomyces cerevisiae (strain ATCC 204508 ... [more]
BLAST of CmoCh12G001300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNV6_CUCSA2.4e-5364.47Uncharacterized protein OS=Cucumis sativus GN=Csa_2G369100 PE=4 SV=1[more]
A0A067GN17_CITSI1.8e-3551.28Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029538mg PE=4 SV=1[more]
V4SHN7_9ROSI3.9e-3551.53Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002573mg PE=4 SV=1[more]
A0A061FF28_THECC1.5e-3452.60Cytochrome C oxidase polypeptide vib, putative OS=Theobroma cacao GN=TCM_034860 ... [more]
A0A0B0NE93_GOSAR2.1e-3351.81Cytochrome c oxidase subunit 6b-1-like protein OS=Gossypium arboreum GN=F383_168... [more]
BLAST of CmoCh12G001300 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G22450.13.2e-2842.05 cytochrome C oxidase 6B[more]
AT4G28060.12.7e-1957.33 Cytochrome c oxidase, subunit Vib family protein[more]
AT5G57815.11.3e-1854.67 Cytochrome c oxidase, subunit Vib family protein[more]
BLAST of CmoCh12G001300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449469835|ref|XP_004152624.1|3.5e-5364.47PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis sativus][more]
gi|659088206|ref|XP_008444857.1|1.7e-5266.15PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis melo][more]
gi|568837087|ref|XP_006472562.1|2.5e-3551.28PREDICTED: cytochrome c oxidase subunit 6b-1 [Citrus sinensis][more]
gi|567882749|ref|XP_006433933.1|5.6e-3551.53hypothetical protein CICLE_v10002573mg [Citrus clementina][more]
gi|590597798|ref|XP_007018715.1|2.1e-3452.60Cytochrome C oxidase polypeptide vib, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003213Cyt_c_oxidase_su6B
Vocabulary: Molecular Function
TermDefinition
GO:0004129cytochrome-c oxidase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0015992 proton transport
biological_process GO:1902600 hydrogen ion transmembrane transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0008150 biological_process
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0005739 mitochondrion
cellular_component GO:0045277 respiratory chain complex IV
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0004129 cytochrome-c oxidase activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh12G001300.1CmoCh12G001300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003213Cytochrome c oxidase, subunit VIbGENE3DG3DSA:1.10.10.140coord: 117..161
score: 3.4
IPR003213Cytochrome c oxidase, subunit VIbPFAMPF02297COX6Bcoord: 117..158
score: 6.
IPR003213Cytochrome c oxidase, subunit VIbunknownSSF47694Cytochrome c oxidase subunit hcoord: 112..161
score: 1.7
NoneNo IPR availablePRODOMPD015172coord: 118..162
score: 5.0
NoneNo IPR availablePANTHERPTHR11387CYTOCHROME C OXIDASE POLYPEPTIDE VIBcoord: 88..162
score: 9.0
NoneNo IPR availablePANTHERPTHR11387:SF15CYTOCHROME C OXIDASE SUBUNIT 6B-1coord: 88..162
score: 9.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh12G001300Cucsa.160190Cucumber (Gy14) v1cgycmoB0449
CmoCh12G001300CmaCh12G001700Cucurbita maxima (Rimu)cmacmoB176
CmoCh12G001300CmaCh05G005090Cucurbita maxima (Rimu)cmacmoB765
CmoCh12G001300Cla022111Watermelon (97103) v1cmowmB135
CmoCh12G001300Csa2G369100Cucumber (Chinese Long) v2cmocuB153
CmoCh12G001300MELO3C011044Melon (DHL92) v3.5.1cmomeB154
CmoCh12G001300ClCG08G011290Watermelon (Charleston Gray)cmowcgB162
CmoCh12G001300CSPI02G21180Wild cucumber (PI 183967)cmocpiB154
CmoCh12G001300Lsi08G009840Bottle gourd (USVL1VR-Ls)cmolsiB176
CmoCh12G001300Cp4.1LG11g04470Cucurbita pepo (Zucchini)cmocpeB148
CmoCh12G001300Cp4.1LG07g01420Cucurbita pepo (Zucchini)cmocpeB174
CmoCh12G001300MELO3C011044.2Melon (DHL92) v3.6.1cmomedB170
CmoCh12G001300CsaV3_2G029850Cucumber (Chinese Long) v3cmocucB0180
CmoCh12G001300Cla97C08G154260Watermelon (97103) v2cmowmbB179
CmoCh12G001300Bhi04G000643Wax gourdcmowgoB0193
CmoCh12G001300CsGy2G020920Cucumber (Gy14) v2cgybcmoB163
CmoCh12G001300Carg20529Silver-seed gourdcarcmoB0893
CmoCh12G001300Carg08200Silver-seed gourdcarcmoB0080
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh12G001300CmoCh05G005360Cucurbita moschata (Rifu)cmocmoB150
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh12G001300Cucurbita moschata (Rifu)cmocmoB005
CmoCh12G001300Cucurbita moschata (Rifu)cmocmoB140
CmoCh12G001300Cucurbita moschata (Rifu)cmocmoB163
CmoCh12G001300Cucumber (Gy14) v1cgycmoB0218
CmoCh12G001300Cucumber (Gy14) v1cgycmoB0854
CmoCh12G001300Cucurbita maxima (Rimu)cmacmoB034
CmoCh12G001300Cucurbita maxima (Rimu)cmacmoB844
CmoCh12G001300Wild cucumber (PI 183967)cmocpiB167
CmoCh12G001300Wild cucumber (PI 183967)cmocpiB188
CmoCh12G001300Cucumber (Chinese Long) v2cmocuB164
CmoCh12G001300Cucumber (Chinese Long) v2cmocuB184
CmoCh12G001300Melon (DHL92) v3.5.1cmomeB175
CmoCh12G001300Melon (DHL92) v3.5.1cmomeB159
CmoCh12G001300Watermelon (Charleston Gray)cmowcgB143
CmoCh12G001300Watermelon (Charleston Gray)cmowcgB129
CmoCh12G001300Watermelon (97103) v1cmowmB155
CmoCh12G001300Watermelon (97103) v1cmowmB161
CmoCh12G001300Bottle gourd (USVL1VR-Ls)cmolsiB153
CmoCh12G001300Bottle gourd (USVL1VR-Ls)cmolsiB155
CmoCh12G001300Bottle gourd (USVL1VR-Ls)cmolsiB159
CmoCh12G001300Cucumber (Gy14) v2cgybcmoB274
CmoCh12G001300Cucumber (Gy14) v2cgybcmoB706
CmoCh12G001300Cucumber (Gy14) v2cgybcmoB700
CmoCh12G001300Melon (DHL92) v3.6.1cmomedB175
CmoCh12G001300Melon (DHL92) v3.6.1cmomedB194
CmoCh12G001300Silver-seed gourdcarcmoB0544
CmoCh12G001300Silver-seed gourdcarcmoB0868
CmoCh12G001300Cucumber (Chinese Long) v3cmocucB0173
CmoCh12G001300Cucumber (Chinese Long) v3cmocucB0195
CmoCh12G001300Cucumber (Chinese Long) v3cmocucB0209
CmoCh12G001300Watermelon (97103) v2cmowmbB150
CmoCh12G001300Watermelon (97103) v2cmowmbB151