CmoCh09G002290 (gene) Cucurbita moschata (Rifu)

NameCmoCh09G002290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTranscription factor, putative
LocationCmo_Chr09 : 1062565 .. 1063254 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATTATGATGATGATGCAACAAATGGAGAAAATCCCTGAATTTTACAATCATCTCTCACCGCCCTCCGATCATTTCAGCTCAAGCACCACCGACCCACATTGCCTGGAAACCCTTCAACAAGCCGCGGAGTCCTCGTCGCCTCCATTCACCAACAACCTACCTTATAATTTGCCTCAAACTGTTCCATTCCCCACCAGTTCACGGTGGCGAAACTCTGGCGGTGAAACGGACTTGCAGAAACAGAGGTCTGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATCCAAATAGACCCAGAAGCGGTGAAGCCACCAAAGAGGAGGAACGTCAAGATTTCAACCGACCCACAAAGCGTAGCGGCTCGACATAGAAGAGAGAGAATTAGCGAGAGAATTAGGATACTCCAAAGATTGGTCCCTGGAGGTACCAAAATGGATACCGCTTCTATGTTGGATGAGGCTATACATTACGTAAAATTCTTGAAGACCCAAGTGCAATCCCTCGAAAGAGCCGCCACCAACAGGCCACTCCCTGATGCTGCTGCAGCAGCAGCAGCAGCAGCAGCACCTGGCGTAGGGTTTCCTCTGGAAATGTCAAGTGGCAGCTATGTCCCCATGGCCAAACCATCCCAAATGACTCACAACCTTGAGCAGTACGGAGATGCTTAA

mRNA sequence

ATGGAGATTATGATGATGATGCAACAAATGGAGAAAATCCCTGAATTTTACAATCATCTCTCACCGCCCTCCGATCATTTCAGCTCAAGCACCACCGACCCACATTGCCTGGAAACCCTTCAACAAGCCGCGGAGTCCTCGTCGCCTCCATTCACCAACAACCTACCTTATAATTTGCCTCAAACTGTTCCATTCCCCACCAGTTCACGGTGGCGAAACTCTGGCGGTGAAACGGACTTGCAGAAACAGAGGTCTGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATCCAAATAGACCCAGAAGCGGTGAAGCCACCAAAGAGGAGGAACGTCAAGATTTCAACCGACCCACAAAGCGTAGCGGCTCGACATAGAAGAGAGAGAATTAGCGAGAGAATTAGGATACTCCAAAGATTGGTCCCTGGAGGTACCAAAATGGATACCGCTTCTATGTTGGATGAGGCTATACATTACGTAAAATTCTTGAAGACCCAAGTGCAATCCCTCGAAAGAGCCGCCACCAACAGGCCACTCCCTGATGCTGCTGCAGCAGCAGCAGCAGCAGCAGCACCTGGCGTAGGGTTTCCTCTGGAAATGTCAAGTGGCAGCTATGTCCCCATGGCCAAACCATCCCAAATGACTCACAACCTTGAGCAGTACGGAGATGCTTAA

Coding sequence (CDS)

ATGGAGATTATGATGATGATGCAACAAATGGAGAAAATCCCTGAATTTTACAATCATCTCTCACCGCCCTCCGATCATTTCAGCTCAAGCACCACCGACCCACATTGCCTGGAAACCCTTCAACAAGCCGCGGAGTCCTCGTCGCCTCCATTCACCAACAACCTACCTTATAATTTGCCTCAAACTGTTCCATTCCCCACCAGTTCACGGTGGCGAAACTCTGGCGGTGAAACGGACTTGCAGAAACAGAGGTCTGTGGCGGCGATGAGGGAGATGATATTCCGAATAGCAGTGATGCAACCAATCCAAATAGACCCAGAAGCGGTGAAGCCACCAAAGAGGAGGAACGTCAAGATTTCAACCGACCCACAAAGCGTAGCGGCTCGACATAGAAGAGAGAGAATTAGCGAGAGAATTAGGATACTCCAAAGATTGGTCCCTGGAGGTACCAAAATGGATACCGCTTCTATGTTGGATGAGGCTATACATTACGTAAAATTCTTGAAGACCCAAGTGCAATCCCTCGAAAGAGCCGCCACCAACAGGCCACTCCCTGATGCTGCTGCAGCAGCAGCAGCAGCAGCAGCACCTGGCGTAGGGTTTCCTCTGGAAATGTCAAGTGGCAGCTATGTCCCCATGGCCAAACCATCCCAAATGACTCACAACCTTGAGCAGTACGGAGATGCTTAA
BLAST of CmoCh09G002290 vs. Swiss-Prot
Match: HEC2_ARATH (Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.6e-46
Identity = 121/207 (58.45%), Postives = 139/207 (67.15%), Query Frame = 1

Query: 5   MMMQQMEKIPEFYNHLSP-PSDH----FSSSTTDPHCLETLQQAAESSSPPFTNNLPYNL 64
           MMMQQMEK+PE +++ +P P+ H     S S T P            S  PF   +P++ 
Sbjct: 10  MMMQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTH-----SHLPFDQTMPHHQ 69

Query: 65  P----QTVPFPTSSRWRNSGGETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRR 124
           P    +  P P+SS     GG +D     ++AAMREMIFRIAVMQPI IDPE+VKPPKR+
Sbjct: 70  PGLNFRYAPSPSSSLPEKRGGCSD---NANMAAMREMIFRIAVMQPIHIDPESVKPPKRK 129

Query: 125 NVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSL 184
           NV+IS DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQSL
Sbjct: 130 NVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 189

Query: 185 -ERAATNRPLPDAAAAAAAAAAPGVGF 202
            E A  N     A A  A A   G G+
Sbjct: 190 EEHAVVNGGGMTAVAGGALAGTVGGGY 208

BLAST of CmoCh09G002290 vs. Swiss-Prot
Match: HEC1_ARATH (Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 6.7e-42
Identity = 112/186 (60.22%), Postives = 122/186 (65.59%), Query Frame = 1

Query: 5   MMMQQMEKIPEFYNHLSPPSDHFSS--STTDPHCLETLQQAAESS---SPPFT------N 64
           MMM QMEK+PEF N   P S  FS   + T P    +    ++ S    P F        
Sbjct: 8   MMMHQMEKLPEFCN---PNSSFFSPDHNNTYPFLFNSTHYQSDHSMTNEPGFRYGSGLLT 67

Query: 65  NLPYNLPQTVPFPTSSRWRNSGGETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPK 124
           N     P T         RN+    +     ++AAMREMIFRIAVMQPI IDPEAVKPPK
Sbjct: 68  NPSSISPNTAYSSVFLDKRNNSNNNN--NGTNMAAMREMIFRIAVMQPIHIDPEAVKPPK 127

Query: 125 RRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQ 180
           RRNV+IS DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQ
Sbjct: 128 RRNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQ 187

BLAST of CmoCh09G002290 vs. Swiss-Prot
Match: HEC3_ARATH (Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.4e-31
Identity = 89/191 (46.60%), Postives = 109/191 (57.07%), Query Frame = 1

Query: 18  NHLSPPSDHFSSSTTDPHCLETLQQAAESSSPPFTNNLPYNLPQTVPFPTSSRWRNSGGE 77
           N+ +   DH      DP  +   Q        PF+++    L  ++   T         E
Sbjct: 24  NNNNKNDDHHHQHNNDPIGMAMDQYTQLHIFNPFSSSHFPPLSSSLTTTTLLSGDQEDDE 83

Query: 78  TDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISE 137
            + +    + AM+EM+++IA MQ + IDP  VK PKRRNV+IS DPQSVAARHRRERISE
Sbjct: 84  DEEEPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISE 143

Query: 138 RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAP 197
           RIRILQRLVPGGTKMDTASMLDEAI YVKFLK Q++ L       P P    A+ A    
Sbjct: 144 RIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTPPPPQDQASQAVTTS 203

Query: 198 GVGFPLEMSSG 209
            V  P   S G
Sbjct: 204 WVSPPPPPSFG 214

BLAST of CmoCh09G002290 vs. Swiss-Prot
Match: BH087_ARATH (Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.9e-28
Identity = 74/137 (54.01%), Postives = 98/137 (71.53%), Query Frame = 1

Query: 85  SVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQR 144
           ++A M+EMI+R A  +P+    E V+ PKR+NVKISTDPQ+VAAR RRERISE+IR+LQ 
Sbjct: 241 AIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQT 300

Query: 145 LVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAPGVGFPLE 204
           LVPGGTKMDTASMLDEA +Y+KFL+ QV++LE     RP  D    + ++A     FPL 
Sbjct: 301 LVPGGTKMDTASMLDEAANYLKFLRAQVKALENL---RPKLDQTNLSFSSAP--TSFPL- 360

Query: 205 MSSGSYVPMAKPSQMTH 222
               S++P+  P+Q+ H
Sbjct: 361 -FHPSFLPLQNPNQIHH 370

BLAST of CmoCh09G002290 vs. Swiss-Prot
Match: IND_ARATH (Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-27
Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 1

Query: 77  ETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERIS 136
           + D +    + AM+EM + IAVMQP+ IDP  V  P RRNV+IS DPQ+V AR RRERIS
Sbjct: 76  DEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERIS 135

Query: 137 ERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLE 177
           E+IRIL+R+VPGG KMDTASMLDEAI Y KFLK QV+ L+
Sbjct: 136 EKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

BLAST of CmoCh09G002290 vs. TrEMBL
Match: A0A0A0L0B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639900 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 9.3e-75
Identity = 175/237 (73.84%), Postives = 184/237 (77.64%), Query Frame = 1

Query: 1   MEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTD-PHCLETLQQAAESSSPPF-------- 60
           MEIMMMMQQMEKIPEFYN  SPPS  FSS+TTD PHC         SSSPP         
Sbjct: 12  MEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDHPHC-----HLDSSSSPPLFINNNSNN 71

Query: 61  -TNNLPYNLPQ--TVPFP--TSSRWRNSGG-ETD-LQKQRSVAAMREMIFRIAVMQPIQI 120
            +NN PYN PQ  TVPFP  +SSRWRNSG  ET+ LQKQRSVAAMREMIFRIAVMQPI I
Sbjct: 72  NSNNPPYNFPQQSTVPFPGTSSSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQPIHI 131

Query: 121 DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY 180
           DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY
Sbjct: 132 DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY 191

Query: 181 VKFLKTQVQSLERAAT---NRPLPDAAAAAAAAAAPGVGFPLEMSSGSYVPMAKPSQ 219
           VKFLKTQVQSLERAA    NRP+    A ++      VGFPLEMS+GSY+P    SQ
Sbjct: 192 VKFLKTQVQSLERAAVSAGNRPITGVGAPSS------VGFPLEMSTGSYIPNHHQSQ 237

BLAST of CmoCh09G002290 vs. TrEMBL
Match: A0A061FIV8_THECC (Basic helix-loop-helix DNA-binding superfamily protein OS=Theobroma cacao GN=TCM_033818 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.4e-59
Identity = 149/260 (57.31%), Postives = 168/260 (64.62%), Query Frame = 1

Query: 4   MMMMQQMEKIPEFYN------HLSPP--------SDHFSSSTTDPHCLETLQQAAESSSP 63
           MMMM QM+K+PEFY        LSP         S + S+ST  PH +E        +SP
Sbjct: 16  MMMMMQMDKLPEFYGAYNEVVELSPAELAGASSNSSNNSTSTATPHFVENPHVG---NSP 75

Query: 64  PFTNNLPYNL-------------PQTVPFPTSSRWRNSGG-------ETDLQKQRSVAAM 123
           PF N LP N+             P  +  P S+RWR +G         T  QK+ S+AAM
Sbjct: 76  PFMN-LPTNISFTGSTPVQEAGPPGFLSSPGSARWRGAGELSGANAFSTLSQKKNSMAAM 135

Query: 124 REMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGG 183
           REMIFRIA MQPI IDPE+VKPPKRRNVKIS DPQSVAARHRRERISERIRILQRLVPGG
Sbjct: 136 REMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGG 195

Query: 184 TKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAPGVGFPLEMSSGS 230
           TKMDTASMLDEAIHYVKFLKTQVQSLER A NRP              G+GFP+ MS+GS
Sbjct: 196 TKMDTASMLDEAIHYVKFLKTQVQSLERVAANRP-------------AGIGFPVAMSNGS 255

BLAST of CmoCh09G002290 vs. TrEMBL
Match: A0A067KZW9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16128 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.6e-56
Identity = 148/266 (55.64%), Postives = 172/266 (64.66%), Query Frame = 1

Query: 4   MMMMQQMEKIPEFYNHLSPPSD-----HFSSSTTD----------PHCLETLQQAAESSS 63
           M MM  M+K+PEFY   +  +D      F  +TT+          PH ++   Q A S+S
Sbjct: 14  MEMMMMMDKLPEFYTPYNDVTDLASPVEFPGATTNTNCINSVNAIPHFIDN-PQIANSNS 73

Query: 64  PP---FTNNLPY---NLPQTV------------PFPTS-SRW------RNSGGETDLQKQ 123
           PP     +N+P+   N   T+            P PT+ SR        NS   T  QK+
Sbjct: 74  PPFVTLPSNMPFASNNNSTTIHEESSQPHFLSNPLPTARSRGVGEFPAANSSYSTQSQKK 133

Query: 124 RSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQ 183
            S+AAMREMIFRIA MQPI IDPE+VKPPKRRNVKIS DPQSVAARHRRERISERIRILQ
Sbjct: 134 NSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQ 193

Query: 184 RLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAPGVGFPL 230
           RLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERA  NRP           ++ G+GFP+
Sbjct: 194 RLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAQANRP-----------SSAGIGFPV 253

BLAST of CmoCh09G002290 vs. TrEMBL
Match: B9GNV1_POPTR (Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0002s12660g PE=4 SV=2)

HSP 1 Score: 226.9 bits (577), Expect = 2.6e-56
Identity = 144/267 (53.93%), Postives = 164/267 (61.42%), Query Frame = 1

Query: 4   MMMMQQMEKIPEFYNHLSPPSDHFSSS----------------TTDPHCLETLQQAAESS 63
           M MM  M+K+PEFY+  +  +DH S +                T +PH          +S
Sbjct: 14  MEMMMLMDKLPEFYDSYNDVADHLSPTEFLAASASNISISHFNTDNPH---------NAS 73

Query: 64  SPPFTN---NLPYNLPQT----------VPFPTSSRWRNSGG-------ETDLQKQRSVA 123
           SPPF N    L  N   T           P P+SSRWR  G         T  QK+ S+A
Sbjct: 74  SPPFMNLQSTLSSNSNSTPTQDQSPQDFFPSPSSSRWRGLGELPEANDYATPSQKKNSMA 133

Query: 124 AMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVP 183
            MREMIFRIA MQPIQIDPE+VKPPKRRNVKIS DPQSVAARHRRERISERIRILQRLVP
Sbjct: 134 TMREMIFRIAAMQPIQIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVP 193

Query: 184 GGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAPGVGFPLEMSS 230
           GGTKMDTASMLDEAIHYVKFLKTQVQSLER   NRP              G+GFP+ M+S
Sbjct: 194 GGTKMDTASMLDEAIHYVKFLKTQVQSLERFQANRP----------TTTTGIGFPVAMTS 253

BLAST of CmoCh09G002290 vs. TrEMBL
Match: E0CPU4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10400 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.4e-56
Identity = 141/249 (56.63%), Postives = 164/249 (65.86%), Query Frame = 1

Query: 2   EIMMMMQQMEKIPEF---YNHLSP-PSDHFSS--STTDPHCLETLQQAAES-----SSPP 61
           ++ MMM QM+K+PEF   YN ++  PS  FS   S T P   +    A+ +     S+  
Sbjct: 13  QMEMMMMQMDKLPEFCGTYNEMAELPSMGFSGGGSATMPQIFDNPHVASPTFINSPSTIS 72

Query: 62  FTNNLPYNLPQTVPFPTSS---RWRNSGG-------ETDLQKQRSVAAMREMIFRIAVMQ 121
           F    P   P    F T+S   RWR +G         T  QK+ S+AAMREMIFRIA MQ
Sbjct: 73  FNGTTPPQEPTAPAFLTNSAVARWRGTGELSGVCNLSTPAQKRNSMAAMREMIFRIAAMQ 132

Query: 122 PIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDE 181
           P+ IDPE+VKPPKRRNVKIS DPQSVAARHRRERISE+IRILQRLVPGGTKMDTASMLDE
Sbjct: 133 PVHIDPESVKPPKRRNVKISKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDE 192

Query: 182 AIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAPGVGFPLEMSSGSYVPMAKPSQMT 230
           AIHYVKFLKTQVQSLERAA NRP              G+GFP+ MS+GSY+P+ K  Q +
Sbjct: 193 AIHYVKFLKTQVQSLERAAANRPA-------------GIGFPVTMSNGSYLPITKQYQPS 248

BLAST of CmoCh09G002290 vs. TAIR10
Match: AT3G50330.1 (AT3G50330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 186.8 bits (473), Expect = 1.5e-47
Identity = 121/207 (58.45%), Postives = 139/207 (67.15%), Query Frame = 1

Query: 5   MMMQQMEKIPEFYNHLSP-PSDH----FSSSTTDPHCLETLQQAAESSSPPFTNNLPYNL 64
           MMMQQMEK+PE +++ +P P+ H     S S T P            S  PF   +P++ 
Sbjct: 10  MMMQQMEKLPEHFSNSNPNPNPHNIMMLSESNTHPFFFNPTH-----SHLPFDQTMPHHQ 69

Query: 65  P----QTVPFPTSSRWRNSGGETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRR 124
           P    +  P P+SS     GG +D     ++AAMREMIFRIAVMQPI IDPE+VKPPKR+
Sbjct: 70  PGLNFRYAPSPSSSLPEKRGGCSD---NANMAAMREMIFRIAVMQPIHIDPESVKPPKRK 129

Query: 125 NVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSL 184
           NV+IS DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQSL
Sbjct: 130 NVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQSL 189

Query: 185 -ERAATNRPLPDAAAAAAAAAAPGVGF 202
            E A  N     A A  A A   G G+
Sbjct: 190 EEHAVVNGGGMTAVAGGALAGTVGGGY 208

BLAST of CmoCh09G002290 vs. TAIR10
Match: AT5G67060.1 (AT5G67060.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 172.2 bits (435), Expect = 3.8e-43
Identity = 112/186 (60.22%), Postives = 122/186 (65.59%), Query Frame = 1

Query: 5   MMMQQMEKIPEFYNHLSPPSDHFSS--STTDPHCLETLQQAAESS---SPPFT------N 64
           MMM QMEK+PEF N   P S  FS   + T P    +    ++ S    P F        
Sbjct: 8   MMMHQMEKLPEFCN---PNSSFFSPDHNNTYPFLFNSTHYQSDHSMTNEPGFRYGSGLLT 67

Query: 65  NLPYNLPQTVPFPTSSRWRNSGGETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPK 124
           N     P T         RN+    +     ++AAMREMIFRIAVMQPI IDPEAVKPPK
Sbjct: 68  NPSSISPNTAYSSVFLDKRNNSNNNN--NGTNMAAMREMIFRIAVMQPIHIDPEAVKPPK 127

Query: 125 RRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQ 180
           RRNV+IS DPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLK QVQ
Sbjct: 128 RRNVRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQ 187

BLAST of CmoCh09G002290 vs. TAIR10
Match: AT5G09750.1 (AT5G09750.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 137.1 bits (344), Expect = 1.3e-32
Identity = 89/191 (46.60%), Postives = 109/191 (57.07%), Query Frame = 1

Query: 18  NHLSPPSDHFSSSTTDPHCLETLQQAAESSSPPFTNNLPYNLPQTVPFPTSSRWRNSGGE 77
           N+ +   DH      DP  +   Q        PF+++    L  ++   T         E
Sbjct: 24  NNNNKNDDHHHQHNNDPIGMAMDQYTQLHIFNPFSSSHFPPLSSSLTTTTLLSGDQEDDE 83

Query: 78  TDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISE 137
            + +    + AM+EM+++IA MQ + IDP  VK PKRRNV+IS DPQSVAARHRRERISE
Sbjct: 84  DEEEPLEELGAMKEMMYKIAAMQSVDIDPATVKKPKRRNVRISDDPQSVAARHRRERISE 143

Query: 138 RIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAP 197
           RIRILQRLVPGGTKMDTASMLDEAI YVKFLK Q++ L       P P    A+ A    
Sbjct: 144 RIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLNNNTGYTPPPPQDQASQAVTTS 203

Query: 198 GVGFPLEMSSG 209
            V  P   S G
Sbjct: 204 WVSPPPPPSFG 214

BLAST of CmoCh09G002290 vs. TAIR10
Match: AT3G21330.1 (AT3G21330.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-29
Identity = 74/137 (54.01%), Postives = 98/137 (71.53%), Query Frame = 1

Query: 85  SVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQR 144
           ++A M+EMI+R A  +P+    E V+ PKR+NVKISTDPQ+VAAR RRERISE+IR+LQ 
Sbjct: 241 AIAQMKEMIYRAAAFRPVNFGLEIVEKPKRKNVKISTDPQTVAARQRRERISEKIRVLQT 300

Query: 145 LVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAPGVGFPLE 204
           LVPGGTKMDTASMLDEA +Y+KFL+ QV++LE     RP  D    + ++A     FPL 
Sbjct: 301 LVPGGTKMDTASMLDEAANYLKFLRAQVKALENL---RPKLDQTNLSFSSAP--TSFPL- 360

Query: 205 MSSGSYVPMAKPSQMTH 222
               S++P+  P+Q+ H
Sbjct: 361 -FHPSFLPLQNPNQIHH 370

BLAST of CmoCh09G002290 vs. TAIR10
Match: AT4G00120.1 (AT4G00120.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 124.8 bits (312), Expect = 6.9e-29
Identity = 64/100 (64.00%), Postives = 77/100 (77.00%), Query Frame = 1

Query: 77  ETDLQKQRSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERIS 136
           + D +    + AM+EM + IAVMQP+ IDP  V  P RRNV+IS DPQ+V AR RRERIS
Sbjct: 76  DEDEEYDEDMDAMKEMQYMIAVMQPVDIDPATVPKPNRRNVRISDDPQTVVARRRRERIS 135

Query: 137 ERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLE 177
           E+IRIL+R+VPGG KMDTASMLDEAI Y KFLK QV+ L+
Sbjct: 136 EKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRILQ 175

BLAST of CmoCh09G002290 vs. NCBI nr
Match: gi|659103298|ref|XP_008452566.1| (PREDICTED: transcription factor HEC2-like [Cucumis melo])

HSP 1 Score: 289.3 bits (739), Expect = 6.0e-75
Identity = 174/229 (75.98%), Postives = 179/229 (78.17%), Query Frame = 1

Query: 1   MEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTD-PHCLETLQQAAESSSPPF-------T 60
           MEIMMMMQQMEKIPEFYN  SPPS  FSS+TTD PHC         SSSPP         
Sbjct: 12  MEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDNPHC-----HLDSSSSPPLFINNNNSN 71

Query: 61  NNLPYNLPQ--TVPFP--TSSRWRNSGG-ETD-LQKQRSVAAMREMIFRIAVMQPIQIDP 120
           NN PYN PQ  TVPFP  + SRWRNSG  ET+ LQKQRSVAAMREMIFRIAVMQPI IDP
Sbjct: 72  NNPPYNFPQQSTVPFPGTSPSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQPIHIDP 131

Query: 121 EAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVK 180
           EAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVK
Sbjct: 132 EAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVK 191

Query: 181 FLKTQVQSLERAAT---NRPLPDAAAAAAAAAAPGVGFPLEMSSGSYVP 213
           FLKTQVQSLERAA    NRP+           AP VGFPLEMSSGSY+P
Sbjct: 192 FLKTQVQSLERAAVSTGNRPI-------TGGGAPSVGFPLEMSSGSYIP 228

BLAST of CmoCh09G002290 vs. NCBI nr
Match: gi|449447251|ref|XP_004141382.1| (PREDICTED: transcription factor HEC2-like [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 1.3e-74
Identity = 175/237 (73.84%), Postives = 184/237 (77.64%), Query Frame = 1

Query: 1   MEIMMMMQQMEKIPEFYNHLSPPSDHFSSSTTD-PHCLETLQQAAESSSPPF-------- 60
           MEIMMMMQQMEKIPEFYN  SPPS  FSS+TTD PHC         SSSPP         
Sbjct: 12  MEIMMMMQQMEKIPEFYNDFSPPSSDFSSTTTDHPHC-----HLDSSSSPPLFINNNSNN 71

Query: 61  -TNNLPYNLPQ--TVPFP--TSSRWRNSGG-ETD-LQKQRSVAAMREMIFRIAVMQPIQI 120
            +NN PYN PQ  TVPFP  +SSRWRNSG  ET+ LQKQRSVAAMREMIFRIAVMQPI I
Sbjct: 72  NSNNPPYNFPQQSTVPFPGTSSSRWRNSGSCETESLQKQRSVAAMREMIFRIAVMQPIHI 131

Query: 121 DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY 180
           DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY
Sbjct: 132 DPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHY 191

Query: 181 VKFLKTQVQSLERAAT---NRPLPDAAAAAAAAAAPGVGFPLEMSSGSYVPMAKPSQ 219
           VKFLKTQVQSLERAA    NRP+    A ++      VGFPLEMS+GSY+P    SQ
Sbjct: 192 VKFLKTQVQSLERAAVSAGNRPITGVGAPSS------VGFPLEMSTGSYIPNHHQSQ 237

BLAST of CmoCh09G002290 vs. NCBI nr
Match: gi|590592169|ref|XP_007017204.1| (Basic helix-loop-helix DNA-binding superfamily protein [Theobroma cacao])

HSP 1 Score: 237.7 bits (605), Expect = 2.1e-59
Identity = 149/260 (57.31%), Postives = 168/260 (64.62%), Query Frame = 1

Query: 4   MMMMQQMEKIPEFYN------HLSPP--------SDHFSSSTTDPHCLETLQQAAESSSP 63
           MMMM QM+K+PEFY        LSP         S + S+ST  PH +E        +SP
Sbjct: 16  MMMMMQMDKLPEFYGAYNEVVELSPAELAGASSNSSNNSTSTATPHFVENPHVG---NSP 75

Query: 64  PFTNNLPYNL-------------PQTVPFPTSSRWRNSGG-------ETDLQKQRSVAAM 123
           PF N LP N+             P  +  P S+RWR +G         T  QK+ S+AAM
Sbjct: 76  PFMN-LPTNISFTGSTPVQEAGPPGFLSSPGSARWRGAGELSGANAFSTLSQKKNSMAAM 135

Query: 124 REMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVPGG 183
           REMIFRIA MQPI IDPE+VKPPKRRNVKIS DPQSVAARHRRERISERIRILQRLVPGG
Sbjct: 136 REMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGG 195

Query: 184 TKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAPGVGFPLEMSSGS 230
           TKMDTASMLDEAIHYVKFLKTQVQSLER A NRP              G+GFP+ MS+GS
Sbjct: 196 TKMDTASMLDEAIHYVKFLKTQVQSLERVAANRP-------------AGIGFPVAMSNGS 255

BLAST of CmoCh09G002290 vs. NCBI nr
Match: gi|802572356|ref|XP_012068336.1| (PREDICTED: transcription factor HEC2-like [Jatropha curcas])

HSP 1 Score: 226.9 bits (577), Expect = 3.7e-56
Identity = 148/266 (55.64%), Postives = 172/266 (64.66%), Query Frame = 1

Query: 4   MMMMQQMEKIPEFYNHLSPPSD-----HFSSSTTD----------PHCLETLQQAAESSS 63
           M MM  M+K+PEFY   +  +D      F  +TT+          PH ++   Q A S+S
Sbjct: 14  MEMMMMMDKLPEFYTPYNDVTDLASPVEFPGATTNTNCINSVNAIPHFIDN-PQIANSNS 73

Query: 64  PP---FTNNLPY---NLPQTV------------PFPTS-SRW------RNSGGETDLQKQ 123
           PP     +N+P+   N   T+            P PT+ SR        NS   T  QK+
Sbjct: 74  PPFVTLPSNMPFASNNNSTTIHEESSQPHFLSNPLPTARSRGVGEFPAANSSYSTQSQKK 133

Query: 124 RSVAAMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQ 183
            S+AAMREMIFRIA MQPI IDPE+VKPPKRRNVKIS DPQSVAARHRRERISERIRILQ
Sbjct: 134 NSMAAMREMIFRIAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQ 193

Query: 184 RLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAPGVGFPL 230
           RLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERA  NRP           ++ G+GFP+
Sbjct: 194 RLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERAQANRP-----------SSAGIGFPV 253

BLAST of CmoCh09G002290 vs. NCBI nr
Match: gi|566157687|ref|XP_002301178.2| (basic helix-loop-helix family protein [Populus trichocarpa])

HSP 1 Score: 226.9 bits (577), Expect = 3.7e-56
Identity = 144/267 (53.93%), Postives = 164/267 (61.42%), Query Frame = 1

Query: 4   MMMMQQMEKIPEFYNHLSPPSDHFSSS----------------TTDPHCLETLQQAAESS 63
           M MM  M+K+PEFY+  +  +DH S +                T +PH          +S
Sbjct: 14  MEMMMLMDKLPEFYDSYNDVADHLSPTEFLAASASNISISHFNTDNPH---------NAS 73

Query: 64  SPPFTN---NLPYNLPQT----------VPFPTSSRWRNSGG-------ETDLQKQRSVA 123
           SPPF N    L  N   T           P P+SSRWR  G         T  QK+ S+A
Sbjct: 74  SPPFMNLQSTLSSNSNSTPTQDQSPQDFFPSPSSSRWRGLGELPEANDYATPSQKKNSMA 133

Query: 124 AMREMIFRIAVMQPIQIDPEAVKPPKRRNVKISTDPQSVAARHRRERISERIRILQRLVP 183
            MREMIFRIA MQPIQIDPE+VKPPKRRNVKIS DPQSVAARHRRERISERIRILQRLVP
Sbjct: 134 TMREMIFRIAAMQPIQIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVP 193

Query: 184 GGTKMDTASMLDEAIHYVKFLKTQVQSLERAATNRPLPDAAAAAAAAAAPGVGFPLEMSS 230
           GGTKMDTASMLDEAIHYVKFLKTQVQSLER   NRP              G+GFP+ M+S
Sbjct: 194 GGTKMDTASMLDEAIHYVKFLKTQVQSLERFQANRP----------TTTTGIGFPVAMTS 253

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
HEC2_ARATH2.6e-4658.45Transcription factor HEC2 OS=Arabidopsis thaliana GN=HEC2 PE=1 SV=1[more]
HEC1_ARATH6.7e-4260.22Transcription factor HEC1 OS=Arabidopsis thaliana GN=HEC1 PE=1 SV=1[more]
HEC3_ARATH2.4e-3146.60Transcription factor HEC3 OS=Arabidopsis thaliana GN=HEC3 PE=1 SV=1[more]
BH087_ARATH1.9e-2854.01Transcription factor bHLH87 OS=Arabidopsis thaliana GN=BHLH87 PE=2 SV=1[more]
IND_ARATH1.2e-2764.00Transcription factor IND OS=Arabidopsis thaliana GN=IND PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A0A0L0B3_CUCSA9.3e-7573.84Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639900 PE=4 SV=1[more]
A0A061FIV8_THECC1.4e-5957.31Basic helix-loop-helix DNA-binding superfamily protein OS=Theobroma cacao GN=TCM... [more]
A0A067KZW9_JATCU2.6e-5655.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16128 PE=4 SV=1[more]
B9GNV1_POPTR2.6e-5653.93Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0002s12660... [more]
E0CPU4_VITVI4.4e-5656.63Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10400 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT3G50330.11.5e-4758.45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G67060.13.8e-4360.22 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G09750.11.3e-3246.60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G21330.11.1e-2954.01 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G00120.16.9e-2964.00 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
Match NameE-valueIdentityDescription
gi|659103298|ref|XP_008452566.1|6.0e-7575.98PREDICTED: transcription factor HEC2-like [Cucumis melo][more]
gi|449447251|ref|XP_004141382.1|1.3e-7473.84PREDICTED: transcription factor HEC2-like [Cucumis sativus][more]
gi|590592169|ref|XP_007017204.1|2.1e-5957.31Basic helix-loop-helix DNA-binding superfamily protein [Theobroma cacao][more]
gi|802572356|ref|XP_012068336.1|3.7e-5655.64PREDICTED: transcription factor HEC2-like [Jatropha curcas][more]
gi|566157687|ref|XP_002301178.2|3.7e-5653.93basic helix-loop-helix family protein [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G002290.1CmoCh09G002290.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 124..178
score: 5.0
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 129..168
score: 6.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 125..174
score: 1.4
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 119..168
score: 15
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 124..177
score: 4.06
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 1..215
score: 3.7
NoneNo IPR availablePANTHERPTHR12565:SF118SUBFAMILY NOT NAMEDcoord: 1..215
score: 3.7

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh09G002290Cucsa.352300Cucumber (Gy14) v1cgycmoB0961
CmoCh09G002290Cucsa.396050Cucumber (Gy14) v1cgycmoB1083
CmoCh09G002290CmaCh09G002350Cucurbita maxima (Rimu)cmacmoB027
CmoCh09G002290CmaCh05G001790Cucurbita maxima (Rimu)cmacmoB755
CmoCh09G002290Cla020660Watermelon (97103) v1cmowmB018
CmoCh09G002290Cla022582Watermelon (97103) v1cmowmB007
CmoCh09G002290Csa2G357190Cucumber (Chinese Long) v2cmocuB002
CmoCh09G002290Csa4G639900Cucumber (Chinese Long) v2cmocuB011
CmoCh09G002290MELO3C010848Melon (DHL92) v3.5.1cmomeB012
CmoCh09G002290MELO3C016763Melon (DHL92) v3.5.1cmomeB029
CmoCh09G002290ClCG05G019980Watermelon (Charleston Gray)cmowcgB015
CmoCh09G002290ClCG08G016020Watermelon (Charleston Gray)cmowcgB023
CmoCh09G002290CSPI02G19010Wild cucumber (PI 183967)cmocpiB002
CmoCh09G002290CSPI04G24200Wild cucumber (PI 183967)cmocpiB011
CmoCh09G002290Lsi08G014800Bottle gourd (USVL1VR-Ls)cmolsiB020
CmoCh09G002290Lsi04G015500Bottle gourd (USVL1VR-Ls)cmolsiB012
CmoCh09G002290Cp4.1LG11g01470Cucurbita pepo (Zucchini)cmocpeB006
CmoCh09G002290Cp4.1LG06g01720Cucurbita pepo (Zucchini)cmocpeB034
CmoCh09G002290MELO3C010848.2Melon (DHL92) v3.6.1cmomedB012
CmoCh09G002290MELO3C016763.2Melon (DHL92) v3.6.1cmomedB029
CmoCh09G002290CsaV3_4G034440Cucumber (Chinese Long) v3cmocucB0015
CmoCh09G002290CsaV3_2G026610Cucumber (Chinese Long) v3cmocucB0004
CmoCh09G002290Cla97C05G101640Watermelon (97103) v2cmowmbB014
CmoCh09G002290Cla97C08G159640Watermelon (97103) v2cmowmbB023
CmoCh09G002290Bhi09G002720Wax gourdcmowgoB0029
CmoCh09G002290Bhi04G000332Wax gourdcmowgoB0005
CmoCh09G002290CsGy4G022460Cucumber (Gy14) v2cgybcmoB433
CmoCh09G002290CsGy2G018890Cucumber (Gy14) v2cgybcmoB138
CmoCh09G002290Carg11853Silver-seed gourdcarcmoB0255
CmoCh09G002290Carg26318Silver-seed gourdcarcmoB1067
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh09G002290CmoCh05G001760Cucurbita moschata (Rifu)cmocmoB033