CmoCh05G010940 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G010940
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	C2H2 and C2HC zinc fingers superfamily protein
Location	Cmo_Chr05 : 8742823 .. 8744523 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCAGTGGTGCGGTCAAGTTTTTTTTCGGCGGCGATGGCTCATGCCAGCAATACTGTAAGTTCTAATCTTCCGTTTCATTTTGAACCCTAGCTTACTGATATTCCATCCCAACTTAAATTCTCTGAGTGGTTCTGATTCTGGTTCTGGCACATTTTGTGGATGAAACGAGAAAAATAGTTAAGAATGATGAAAAAACCTCAACTCTTTCCTTTTGGGATTTCGATGGGGTTTATTTGCAACTAATTTCGGTCGATTTCATAAATGCAGGTTGCTGGAGTTGATAACACCATCAGAAGAAAATTTGACCGAGAGGAGTGTTTGGAACGGCCTCGTGAGCATGAAAAACAGGTTGGGACTTATGGAATTTATTTCTTGTTCTCATCGTCATCTTAATGCTTATTTTTGTGTGTGTTCCTCAATGTAAGTGTTCCCTTTCCTGCCATTTCTGTTGAGTATTTTGCTGTCATTCACGTGTAATTATAGAAGCTAGAATATGTAAACTTGGTATGATGATGGTTCAGAAGGATTTCAATTTTCATCTTTTGTTCAGTGAAAGGATCGCCAGTGCAGACAAAACCATTGAAGCATAGAGATTACGATTGGGAAAAACCCAGGTTAGTTATACCATTGTCTCACTGTTCCTTCAAACATTTTCTTGAATCAGTGTGTACTTTGGTCACTTTGTTGGAGAATCTGTATTTGCACTGCTCTTTTGTGTTTATGTGGTAGAAGTTAAGGCTGTCTTGAGTTAATAATTGTTCGTTTTTTCATCCATTTCTGTTAGTACTACATTGACCTTTAAAATCTTTAGTATATTAACTTTTAGGCTATCAAATTTTGGTCCGTGGCCTCTCGGTGGATGCTGCTGTAGATTCAAGTTCTATGTGGCAACTTTATTTGAAATGTAAGACTTATGTATTGCCTGTACTGCACTTTGTTAACTGGTGCGAGGTTCTGCATCGGTCGGAGAAGGGAATGAAACATTTCTTACTAGACTGTGGAAACCTCTTCGACGCGTTTTAAAACCTTGAGAGGGGAAGCACGAAAGGGAAAACCTAAAAAGAACAATATTTAGCGGTGGGCTATAAATGGTATCAGAGTAAGACACCGGGCGATGCGCTAGTGAGGACGTTGGGCTCCCAAGAGGGGTGAATTTTGAGGTTCCACATCGGTTGGAGAGGGGAAGAAGCATTCTTTATAAGCACGTGGCTCCTTGCATTTTAAAACCTTGAGGGGATGCACTAATGGGAAAGCCCAAAAAGGATAATATTTGTTAGCAATGGACTTGAATTGTTACAAATGGTATCAGAGCCAGACATTGGGCGGTGTGCTAGAGAAGACGTTGGGTTCCCCAAGGAGGTGGATTATGAGGTCCCACATTCATTGGAGAGGTGAATGAAGTTCCTAGTAGACGTGTTTTAGAAGGGGCATCTCTTAAACAGGTACCACCCTAATCGTCTCCATTATTTTAGATATTTGTGGAAGCAGTGTCGAAGGGAGCAGTGTCGAAGGGCCAAGTCGCTTTATGTGAAATAGGTGCAGGAGCGGCTTGAAGTTCTCTAAAAGAGAAAAACGCCAGGAAGCTTCACAGAACAAGGTAAAGCTTAAGAGTTCAGAGCTAGCCATGCCATGCCATGCCTTATGGATTGATGCGCAAGGGAAGATCGAAACTTGGGCTTCCCAGCCTTCTGGACTGTAA

mRNA sequence

ATTCAGTGGTGCGGTCAAGTTTTTTTTCGGCGGCGATGGCTCATGCCAGCAATACTGTTGCTGGAGTTGATAACACCATCAGAAGAAAATTTGACCGAGAGGAGTGTTTGGAACGGCCTCTGAAAGGATCGCCAGTGCAGACAAAACCATTGAAGCATAGAGATTACGATTGGGAAAAACCCAGGCTATCAAATTTTGGTCCGTGGCCTCTCGGTGGATGCTGCTGTAGATTCAAGTTCTATGTGGCAACTTTATTTGAAATGTGCAGGAGCGGCTTGAAGTTCTCTAAAAGAGAAAAACGCCAGGAAGCTTCACAGAACAAGGTAAAGCTTAAGAGTTCAGAGCTAGCCATGCCATGCCATGCCTTATGGATTGATGCGCAAGGGAAGATCGAAACTTGGGCTTCCCAGCCTTCTGGACTGTAA

Coding sequence (CDS)

ATGGCTCATGCCAGCAATACTGTTGCTGGAGTTGATAACACCATCAGAAGAAAATTTGACCGAGAGGAGTGTTTGGAACGGCCTCTGAAAGGATCGCCAGTGCAGACAAAACCATTGAAGCATAGAGATTACGATTGGGAAAAACCCAGGCTATCAAATTTTGGTCCGTGGCCTCTCGGTGGATGCTGCTGTAGATTCAAGTTCTATGTGGCAACTTTATTTGAAATGTGCAGGAGCGGCTTGAAGTTCTCTAAAAGAGAAAAACGCCAGGAAGCTTCACAGAACAAGGTAAAGCTTAAGAGTTCAGAGCTAGCCATGCCATGCCATGCCTTATGGATTGATGCGCAAGGGAAGATCGAAACTTGGGCTTCCCAGCCTTCTGGACTGTAA

Homology

[Close]

BLAST of CmoCh05G010940 vs. TrEMBL
Match: A0A0A0LM02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G033890 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 37/59 (62.71%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 1  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD 46
          MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Sbjct: 1  MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYE 59

[Close]

BLAST of CmoCh05G010940 vs. TrEMBL
Match: V7CYT1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G225500g PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 1  MAHASNTVAGVDNTIRRKFDREECLER---------------PLKGSPVQTKPLKHRDYD 46
          M++ SN VAGVDNT RRKFDREE LER                 KG PVQ KPLKHRDY+
Sbjct: 1  MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRSKPKAKGPPVQRKPLKHRDYE 60

[Close]

BLAST of CmoCh05G010940 vs. TrEMBL
Match: I1NBS1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G228900 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 1  MAHASNTVAGVDNTIRRKFDREECLER---------------PLKGSPVQTKPLKHRDYD 46
          M++ SN VAGVDNT RRKFDREE LER                 KG PVQ KPLKHRDY+
Sbjct: 1  MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKAKGPPVQRKPLKHRDYE 60

[Close]

BLAST of CmoCh05G010940 vs. TrEMBL
Match: A0A0B2SE86_GLYSO (Zinc finger matrin-type protein 2 OS=Glycine soja GN=glysoja_001923 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 1  MAHASNTVAGVDNTIRRKFDREECLER---------------PLKGSPVQTKPLKHRDYD 46
          M++ SN VAGVDNT RRKFDREE LER                 KG PVQ KPLKHRDY+
Sbjct: 1  MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKAKGPPVQRKPLKHRDYE 60

[Close]

BLAST of CmoCh05G010940 vs. TrEMBL
Match: A0A0B2P8D3_GLYSO (Zinc finger matrin-type protein 2 OS=Glycine soja GN=glysoja_022624 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-07
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 1  MAHASNTVAGVDNTIRRKFDREECLERPL---------------KGSPVQTKPLKHRDYD 46
          M++ SN VAGVDNT RRKFDREE LER                 KG PVQ KPLKHRDY+
Sbjct: 1  MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKGKGPPVQRKPLKHRDYE 60

[Close]

BLAST of CmoCh05G010940 vs. TAIR10
Match: AT3G05760.1 (AT3G05760.1 C2H2 and C2HC zinc fingers superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 7.1e-07
Identity = 28/55 (50.91%), Postives = 30/55 (54.55%), Query Frame = 1


Query: 4  ASNTVAGVDNTIRRKFDREECLERP--------------LKGSPVQTKPLKHRDY 45
          +SNT  GVDNT R+KFD EE  ER                KG PVQ  PLKHRDY
Sbjct: 3  SSNTTTGVDNTFRKKFDVEEFKERAREREKKESDRSKSRSKGPPVQRAPLKHRDY 57

[Close]

BLAST of CmoCh05G010940 vs. NCBI nr
Match: gi|778667012|ref|XP_011648855.1| (PREDICTED: zinc finger matrin-type protein 2 [Cucumis sativus])

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 37/59 (62.71%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 1  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD 46
          MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Sbjct: 1  MAHTSNTAAGVDNTFRRKFDREEYLERARDREKQEVDRVKSKLKGPPVQRKPLKHRDYE 59

[Close]

BLAST of CmoCh05G010940 vs. NCBI nr
Match: gi|659070162|ref|XP_008453709.1| (PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.9e-09
Identity = 37/59 (62.71%), Postives = 38/59 (64.41%), Query Frame = 1


Query: 1  MAHASNTVAGVDNTIRRKFDREECLER--------------PLKGSPVQTKPLKHRDYD 46
          MAH SNT AGVDNT RRKFDREE LER               LKG PVQ KPLKHRDY+
Sbjct: 1  MAHTSNTAAGVDNTFRRKFDREEYLERAREREKQEVERVKSKLKGPPVQRKPLKHRDYE 59

[Close]

BLAST of CmoCh05G010940 vs. NCBI nr
Match: gi|502113094|ref|XP_004494540.1| (PREDICTED: zinc finger matrin-type protein 2 [Cicer arietinum])

HSP 1 Score: 65.5 bits (158), Expect = 8.0e-08
Identity = 35/60 (58.33%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 1  MAHASNTVAGVDNTIRRKFDREECLER---------------PLKGSPVQTKPLKHRDYD 46
          MA+ SN VAGVDNT RRKFDREE LER                 KG PVQ KPLKHRDY+
Sbjct: 1  MANTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKAKGPPVQRKPLKHRDYE 60

[Close]

BLAST of CmoCh05G010940 vs. NCBI nr
Match: gi|1012115006|ref|XP_015960931.1| (PREDICTED: zinc finger matrin-type protein 2-like [Arachis duranensis])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 1  MAHASNTVAGVDNTIRRKFDREECLER---------------PLKGSPVQTKPLKHRDYD 46
          M++ SN VAGVDNT RRKFDREE LER                 KG PVQ KPLKHRDY+
Sbjct: 1  MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRSKSKAKGPPVQRKPLKHRDYE 60

[Close]

BLAST of CmoCh05G010940 vs. NCBI nr
Match: gi|955386509|ref|XP_014626811.1| (PREDICTED: uncharacterized protein LOC100527057 isoform X1 [Glycine max])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 34/60 (56.67%), Postives = 37/60 (61.67%), Query Frame = 1


Query: 1  MAHASNTVAGVDNTIRRKFDREECLER---------------PLKGSPVQTKPLKHRDYD 46
          M++ SN VAGVDNT RRKFDREE LER                 KG PVQ KPLKHRDY+
Sbjct: 1  MSNTSNNVAGVDNTFRRKFDREEYLERARERERQEEEGRAKPKAKGPPVQRKPLKHRDYE 60

The following BLAST results are available for this feature:

BLAST of CmoCh05G010940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G010940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM02_CUCSA	1.3e-09	62.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G033890 PE=4 SV=1	[more]
V7CYT1_PHAVU	1.2e-07	56.67	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G225500g PE=4 SV=1	[more]
I1NBS1_SOYBN	1.2e-07	56.67	Uncharacterized protein OS=Glycine max GN=GLYMA_19G228900 PE=4 SV=1	[more]
A0A0B2SE86_GLYSO	1.2e-07	56.67	Zinc finger matrin-type protein 2 OS=Glycine soja GN=glysoja_001923 PE=4 SV=1	[more]
A0A0B2P8D3_GLYSO	1.6e-07	56.67	Zinc finger matrin-type protein 2 OS=Glycine soja GN=glysoja_022624 PE=4 SV=1	[more]

BLAST of CmoCh05G010940 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05760.1	7.1e-07	50.91	C2H2 and C2HC zinc fingers superfamily protein	[more]

BLAST of CmoCh05G010940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778667012\|ref\|XP_011648855.1\|	1.9e-09	62.71	PREDICTED: zinc finger matrin-type protein 2 [Cucumis sativus]	[more]
gi\|659070162\|ref\|XP_008453709.1\|	1.9e-09	62.71	PREDICTED: zinc finger matrin-type protein 2 [Cucumis melo]	[more]
gi\|502113094\|ref\|XP_004494540.1\|	8.0e-08	58.33	PREDICTED: zinc finger matrin-type protein 2 [Cicer arietinum]	[more]
gi\|1012115006\|ref\|XP_015960931.1\|	1.8e-07	56.67	PREDICTED: zinc finger matrin-type protein 2-like [Arachis duranensis]	[more]
gi\|955386509\|ref\|XP_014626811.1\|	1.8e-07	56.67	PREDICTED: uncharacterized protein LOC100527057 isoform X1 [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G010940.1	CmoCh05G010940.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G010940	Cucsa.090800	Cucumber (Gy14) v1	cgycmoB0179
CmoCh05G010940	CmaCh05G010800	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G010940	CmaCh12G010380	Cucurbita maxima (Rimu)	cmacmoB190
CmoCh05G010940	Csa2G033890	Cucumber (Chinese Long) v2	cmocuB784
CmoCh05G010940	CSPI02G04570	Wild cucumber (PI 183967)	cmocpiB787
CmoCh05G010940	Lsi11G006190	Bottle gourd (USVL1VR-Ls)	cmolsiB706
CmoCh05G010940	Cp4.1LG07g08710	Cucurbita pepo (Zucchini)	cmocpeB742
CmoCh05G010940	Cp4.1LG11g08790	Cucurbita pepo (Zucchini)	cmocpeB721
CmoCh05G010940	MELO3C004198.2	Melon (DHL92) v3.6.1	cmomedB821
CmoCh05G010940	CsaV3_2G006940	Cucumber (Chinese Long) v3	cmocucB0924
CmoCh05G010940	Cla97C02G040860	Watermelon (97103) v2	cmowmbB785
CmoCh05G010940	Bhi06G001321	Wax gourd	cmowgoB0928
CmoCh05G010940	Carg23270	Silver-seed gourd	carcmoB1191

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G010940	CmoCh12G010480	Cucurbita moschata (Rifu)	cmocmoB148

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G010940	Cucumber (Chinese Long) v2	cmocuB775
CmoCh05G010940	Melon (DHL92) v3.5.1	cmomeB712
CmoCh05G010940	Melon (DHL92) v3.5.1	cmomeB724
CmoCh05G010940	Watermelon (Charleston Gray)	cmowcgB700
CmoCh05G010940	Watermelon (97103) v1	cmowmB757
CmoCh05G010940	Bottle gourd (USVL1VR-Ls)	cmolsiB702
CmoCh05G010940	Bottle gourd (USVL1VR-Ls)	cmolsiB723
CmoCh05G010940	Cucumber (Gy14) v2	cgybcmoB128
CmoCh05G010940	Cucumber (Gy14) v2	cgybcmoB243
CmoCh05G010940	Melon (DHL92) v3.6.1	cmomedB808
CmoCh05G010940	Silver-seed gourd	carcmoB0101
CmoCh05G010940	Silver-seed gourd	carcmoB0769
CmoCh05G010940	Cucumber (Chinese Long) v3	cmocucB0914
CmoCh05G010940	Watermelon (97103) v2	cmowmbB797
CmoCh05G010940	Cucurbita moschata (Rifu)	cmocmoB307