CmoCh05G004030 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G004030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plant protein of unknown function (DUF247)
Location	Cmo_Chr05 : 1832418 .. 1832825 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCGAAACTTGGTAGTATTTGAGCATTTTTCCTCGGCAAATGAGAGCAAGTGTATCCAATATATCCCATTCATGGATTATTTGATAAGCACCGAGGAAGACGTAAGTTTATTTGAGAATGCCAAAATCATAATCAACGATATTGGAGGCAGTGCTAAAGAAATTTCAAAACTGTTTAACAATCTTGGTAAATTTGCCACAGTCCCACATAGTACCCACTTTAACAAAATCACTATTGGTTTACATGAGCACTGCAATAGACGTTGGAACCGAGTGAAAGCTACACTCAGACATGACTATTTTTATACACCATAGGCTTCAATTGCTGCTTCCTATGCTATCTTGGTCATTATTATGACCCTCCTTCAAACTATATTTTCTGGTATATCTGCCTTTCCTAAATAA

mRNA sequence

ATGATGCGAAACTTGGTAGTATTTGAGCATTTTTCCTCGGCAAATGAGAGCAAGTGTATCCAATATATCCCATTCATGGATTATTTGATAAGCACCGAGGAAGACGTAAGTTTATTTGAGAATGCCAAAATCATAATCAACGATATTGGAGGCAGTGCTAAAGAAATTTCAAAACTGTTTAACAATCTTGGTAAATTTGCCACAGTCCCACATAGTACCCACTTTAACAAAATCACTATTGGTTTACATGAGCACTGCAATAGACGTTGGAACCGAGCTTCAATTGCTGCTTCCTATGCTATCTTGGTCATTATTATGACCCTCCTTCAAACTATATTTTCTGGTATATCTGCCTTTCCTAAATAA

Coding sequence (CDS)

ATGATGCGAAACTTGGTAGTATTTGAGCATTTTTCCTCGGCAAATGAGAGCAAGTGTATCCAATATATCCCATTCATGGATTATTTGATAAGCACCGAGGAAGACGTAAGTTTATTTGAGAATGCCAAAATCATAATCAACGATATTGGAGGCAGTGCTAAAGAAATTTCAAAACTGTTTAACAATCTTGGTAAATTTGCCACAGTCCCACATAGTACCCACTTTAACAAAATCACTATTGGTTTACATGAGCACTGCAATAGACGTTGGAACCGAGCTTCAATTGCTGCTTCCTATGCTATCTTGGTCATTATTATGACCCTCCTTCAAACTATATTTTCTGGTATATCTGCCTTTCCTAAATAA

Homology

[Close]

BLAST of CmoCh05G004030 vs. Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.1e-06
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 1


Query: 4   NLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNL 63
           N V FE F + + ++   YI FM  L++ EEDV+   N K+II +  GS  E+S+ F  +
Sbjct: 329 NCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTI 388

Query: 64  GKFATVPHST-HFNKITIGLHEHCNRRWNRA-------------SIAASYAIL-VIIMTL 118
            K       T + N +  G++E+  + +N               +  +S A+L VI++T+
Sbjct: 389 SKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTM 448

[Close]

BLAST of CmoCh05G004030 vs. TrEMBL
Match: A0A0A0LM96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.7e-28
Identity = 71/137 (51.82%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 1   MMRNLVVFEHFS-SANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKL 60
           MMRNL+ FEHF    N +  I Y+ FMDYLISTE+DV+L    KIIINDIGGS +E+S+L
Sbjct: 310 MMRNLLAFEHFPVEVNNTYVIPYVTFMDYLISTEKDVNLLVKEKIIINDIGGSDREVSQL 369

Query: 61  FNNLGKF-ATVPHSTHFNKITIGLHEHCNRRWNR--------------ASIAASYAILVI 120
           FNNL KF ++ P+  +FN I+ GL EHC+R WN+              A+I+ S A +++
Sbjct: 370 FNNLCKFVSSSPNDNYFNNISEGLREHCDRWWNKAKASLKHNYFNTPWAAISFSAATVLL 429

Query: 121 IMTLLQTIFSGISAFPK 122
           ++T+LQT+FS ISAFPK
Sbjct: 430 VLTILQTVFSAISAFPK 446

[Close]

BLAST of CmoCh05G004030 vs. TrEMBL
Match: A0A0A0LSF4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-25
Identity = 69/136 (50.74%), Postives = 89/136 (65.44%), Query Frame = 1


Query: 1   MMRNLVVFEHFSSAN-ESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKL 60
           + RNLV FE F + N +    QYI FMD LI+T++DV L  N+ +IIN+IGGS KE+SKL
Sbjct: 377 LFRNLVAFEQFQAGNGKMYATQYIIFMDNLINTKKDVRLLVNSGVIINNIGGSYKEVSKL 436

Query: 61  FNNLGKFAT-VPHSTHFNKITIGLHEHCNRRWNRASIAASY--------------AILVI 120
           FN LGKF +  P S+ FN I+  LH+HCNRRWN+A  +  +              A  +I
Sbjct: 437 FNKLGKFISGSPTSSEFNDISKDLHKHCNRRWNKAKASLKHNYFNTPWAIVSFIAASCLI 496

[Close]

BLAST of CmoCh05G004030 vs. TrEMBL
Match: A0A0A0LLX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-24
Identity = 66/137 (48.18%), Postives = 89/137 (64.96%), Query Frame = 1


Query: 1   MMRNLVVFEHFS-SANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKL 60
           MMR+L+ FEHF      +  I YI FMDYLISTE DV+L    KIIINDIGGS +E+S+L
Sbjct: 339 MMRDLLAFEHFPIEVQNTYVIPYITFMDYLISTENDVNLLVKEKIIINDIGGSDREVSQL 398

Query: 61  FNNLGKFATVP-HSTHFNKITIGLHEHCNRRWNRASIAASY--------------AILVI 120
           FNNL KF +   ++ +FN I+  L +HC+R WN+A     +              A++++
Sbjct: 399 FNNLCKFVSSSFNNIYFNDISERLRKHCDRWWNKAKATLKHNYCNTPWAFISFLAALILL 458

Query: 121 IMTLLQTIFSGISAFPK 122
           I+T+LQT+FS ISAFPK
Sbjct: 459 ILTVLQTVFSAISAFPK 475

[Close]

BLAST of CmoCh05G004030 vs. TrEMBL
Match: A0A0A0LQ64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.7e-23
Identity = 72/137 (52.55%), Postives = 87/137 (63.50%), Query Frame = 1


Query: 3   RNLVVFEHFSSA-NESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFN 62
           RNL+ +EH      E K I YI FMDYLISTE+DVSL E A II+NDIGGS KE+SKLFN
Sbjct: 377 RNLIAYEHMDKIYKEMKVISYILFMDYLISTEKDVSLLEKAGIIVNDIGGSHKEVSKLFN 436

Query: 63  NLGKFA--TVPHSTHFNK---ITIGLHEHCNRRWNR--------------ASIAASYAIL 120
           NL KF   +  +S +F K   I+  L EH +RRWN+              ASI+   A L
Sbjct: 437 NLSKFVNRSDNNSEYFKKFQGISKALCEHRDRRWNKLKASLKHNYFNTPWASISVFAATL 496

[Close]

BLAST of CmoCh05G004030 vs. TrEMBL
Match: A0A0A0LPJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380630 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 56/135 (41.48%), Postives = 88/135 (65.19%), Query Frame = 1


Query: 1   MMRNLVVFEHFSSANESK-CIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKL 60
           ++RN++ F+ + + N++   I Y+ F+D LI+TE+D  L  N  +IIN +GGS K+I+++
Sbjct: 260 VIRNVIAFDQYPAGNKNAYAIHYVLFLDDLINTEQDAHLLANVGVIINTLGGSDKDITEM 319

Query: 61  FNNLGKFATVPHSTHFNKITIGLHEHCNRRWNR--ASIAASY------------AILVII 120
           FNNL K+ T P  +HF+ I+  L +HCN+RWN+  AS+  +Y            A ++I 
Sbjct: 320 FNNLSKYVTFPVCSHFDDISKDLRKHCNKRWNKAIASLKHNYFNTPWAIISFLAATILIF 379

[Close]

BLAST of CmoCh05G004030 vs. TAIR10
Match: AT3G47200.1 (AT3G47200.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 54.3 bits (129), Expect = 6.1e-08
Identity = 38/129 (29.46%), Postives = 66/129 (51.16%), Query Frame = 1


Query: 4   NLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLFNNL 63
           N V FE F + + ++   YI FM  L++ EEDV+   N K+II +  GS  E+S+ F  +
Sbjct: 329 NCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTI 388

Query: 64  GKFATVPHST-HFNKITIGLHEHCNRRWNRA-------------SIAASYAIL-VIIMTL 118
            K       T + N +  G++E+  + +N               +  +S A+L VI++T+
Sbjct: 389 SKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTM 448

[Close]

BLAST of CmoCh05G004030 vs. TAIR10
Match: AT2G28580.1 (AT2G28580.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 51.6 bits (122), Expect = 3.9e-07
Identity = 34/128 (26.56%), Postives = 64/128 (50.00%), Query Frame = 1


Query: 1   MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLF 60
           ++RNL+  E       +    YI F+D+LI+T++DV L     I+ N +G     ++++ 
Sbjct: 389 VVRNLMALEQCHYPRTTFVCDYISFLDFLINTDQDVDLLAKKGIVKNWLGHQG-SVTEMV 448

Query: 61  NNLGKFATVPHSTHFNKITIGLHEHCNRRWNRA--------------SIAASYAILVIIM 115
           N L     V   +H++ I   L++H + R NR+                A   A++++++
Sbjct: 449 NKL-CLGLVDFGSHYSDIVENLNKHYDNRLNRSVGTLRRVYFKDLWTGTATIAAVVLLVL 508

[Close]

BLAST of CmoCh05G004030 vs. TAIR10
Match: AT1G67150.2 (AT1G67150.2 Plant protein of unknown function (DUF247))

HSP 1 Score: 49.3 bits (116), Expect = 2.0e-06
Identity = 32/128 (25.00%), Postives = 65/128 (50.78%), Query Frame = 1


Query: 1   MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLF 60
           ++RN++ +E       +    YI FM++LI+++EDV++  +A ++ N +G S+  + K+ 
Sbjct: 279 ILRNVIAYEQCHDPENAFTTNYINFMNFLITSDEDVAILTSAGVLTNGVGRSSM-VLKMV 338

Query: 61  NNLGKFATVPHSTHFNKITIGLHEHCNRRWNR--------------ASIAASYAILVIIM 115
           NNL     + + + ++ I   L+ H + R  R               + A   AI ++++
Sbjct: 339 NNLAIGVLLSNQSQYHDIVEKLNIHHSSRRKRIWAKLRKVYFSDLWTTTATLAAISLLLL 398

[Close]

BLAST of CmoCh05G004030 vs. TAIR10
Match: AT5G22550.2 (AT5G22550.2 Plant protein of unknown function (DUF247))

HSP 1 Score: 47.8 bits (112), Expect = 5.7e-06
Identity = 36/136 (26.47%), Postives = 67/136 (49.26%), Query Frame = 1


Query: 1   MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLF 60
           ++ N V FE F+ +  ++   ++ FM  LI+TE+D + F   K I+ +  G+ +E+S  F
Sbjct: 354 LLINCVAFEQFNMSCSTEITSFVIFMGCLINTEDDAT-FLIEKGILENYFGTGEEVSLFF 413

Query: 61  NNLGKFATVPHSTHF-NKITIGLHE----------------HCNRRWNRASIAASYAILV 120
            N+GK  +   S  F + +  G++E                H N  W   S  A  A+++
Sbjct: 414 KNIGKDISFSISKSFLSNVFEGVNEYTSQGYHVHWAGFKYTHFNTPWTFLSSCA--ALVL 473

[Close]

BLAST of CmoCh05G004030 vs. TAIR10
Match: AT2G44930.1 (AT2G44930.1 Plant protein of unknown function (DUF247))

HSP 1 Score: 47.0 bits (110), Expect = 9.7e-06
Identity = 36/135 (26.67%), Postives = 62/135 (45.93%), Query Frame = 1


Query: 1   MMRNLVVFEHFSSANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKLF 60
           +MRNL+  E       +    YI F+D+LI T++DV L     +I N +G  A  ++++ 
Sbjct: 369 IMRNLMALEQCHYPLTAYVCNYIAFLDFLIDTDQDVDLLVKKGVIKNWLGHQA-SVAEMV 428

Query: 61  NNLGKFATVPHSTHFNKITIGLHEHCNRRWNRA--------------SIAASYAILVIIM 120
           N L     V   +H+  I   L++H   R NR+                A   A +++++
Sbjct: 429 NKL-CLGLVDFGSHYYGIADRLNKHYESRRNRSIATLRRVYFKDLWTGTATIAAAVILVL 488

Query: 121 TLLQTIFSGISAFPK 122
           TL+ T+ S +    K
Sbjct: 489 TLIGTVASVLQVTQK 501

[Close]

BLAST of CmoCh05G004030 vs. NCBI nr
Match: gi|700207809|gb|KGN62928.1| (hypothetical protein Csa_2G380080 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 3.8e-28
Identity = 71/137 (51.82%), Postives = 95/137 (69.34%), Query Frame = 1


Query: 1   MMRNLVVFEHFS-SANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKL 60
           MMRNL+ FEHF    N +  I Y+ FMDYLISTE+DV+L    KIIINDIGGS +E+S+L
Sbjct: 310 MMRNLLAFEHFPVEVNNTYVIPYVTFMDYLISTEKDVNLLVKEKIIINDIGGSDREVSQL 369

Query: 61  FNNLGKF-ATVPHSTHFNKITIGLHEHCNRRWNR--------------ASIAASYAILVI 120
           FNNL KF ++ P+  +FN I+ GL EHC+R WN+              A+I+ S A +++
Sbjct: 370 FNNLCKFVSSSPNDNYFNNISEGLREHCDRWWNKAKASLKHNYFNTPWAAISFSAATVLL 429

Query: 121 IMTLLQTIFSGISAFPK 122
           ++T+LQT+FS ISAFPK
Sbjct: 430 VLTILQTVFSAISAFPK 446

[Close]

BLAST of CmoCh05G004030 vs. NCBI nr
Match: gi|659088838|ref|XP_008445188.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26
Identity = 68/137 (49.64%), Postives = 91/137 (66.42%), Query Frame = 1


Query: 1   MMRNLVVFEHFS-SANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKL 60
           MMRNL+ FEHF      +  I Y+ FMDYLI TE+DV+L    KIIINDIGGS +E+S+L
Sbjct: 346 MMRNLLAFEHFPVEVKNTYVIPYLTFMDYLIITEKDVNLLVKEKIIINDIGGSDREVSQL 405

Query: 61  FNNLGKF-ATVPHSTHFNKITIGLHEHCNRRWNR--------------ASIAASYAILVI 120
           FNNL KF ++ P+  +FN  +  L +HC+RRWN+              A+I+ S A  ++
Sbjct: 406 FNNLCKFVSSSPNDNYFNDTSKALRDHCDRRWNKAKASLKHNYFNTPWAAISVSAATFLL 465

Query: 121 IMTLLQTIFSGISAFPK 122
           ++T+LQTIFS ISAFPK
Sbjct: 466 VLTILQTIFSAISAFPK 482

[Close]

BLAST of CmoCh05G004030 vs. NCBI nr
Match: gi|449442190|ref|XP_004138865.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-25
Identity = 69/136 (50.74%), Postives = 89/136 (65.44%), Query Frame = 1


Query: 1   MMRNLVVFEHFSSAN-ESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKL 60
           + RNLV FE F + N +    QYI FMD LI+T++DV L  N+ +IIN+IGGS KE+SKL
Sbjct: 377 LFRNLVAFEQFQAGNGKMYATQYIIFMDNLINTKKDVRLLVNSGVIINNIGGSYKEVSKL 436

Query: 61  FNNLGKFAT-VPHSTHFNKITIGLHEHCNRRWNRASIAASY--------------AILVI 120
           FN LGKF +  P S+ FN I+  LH+HCNRRWN+A  +  +              A  +I
Sbjct: 437 FNKLGKFISGSPTSSEFNDISKDLHKHCNRRWNKAKASLKHNYFNTPWAIVSFIAASCLI 496

[Close]

BLAST of CmoCh05G004030 vs. NCBI nr
Match: gi|659089573|ref|XP_008445583.1| (PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 5.1e-25
Identity = 69/136 (50.74%), Postives = 87/136 (63.97%), Query Frame = 1


Query: 1   MMRNLVVFEHFSSANESK-CIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKL 60
           M RNL+ FE F + NE+    QYI FMD LISTE+DV L  N+ +IIN+IGGS KE+S+L
Sbjct: 435 MFRNLIAFEQFPAGNENMYATQYILFMDDLISTEKDVRLLVNSGVIINNIGGSDKEVSEL 494

Query: 61  FNNLGKFAT-VPHSTHFNKITIGLHEHCNRRWNRASIAASY--------------AILVI 120
           FNNLGKF    P    FN I+  L +HCN RWN+A  +  +              A  ++
Sbjct: 495 FNNLGKFVNQCPSPYMFNHISKALRKHCNGRWNKAKASLKHNYFNTPWAFISFFAASFLV 554

[Close]

BLAST of CmoCh05G004030 vs. NCBI nr
Match: gi|778674379|ref|XP_011650197.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 4.4e-24
Identity = 66/137 (48.18%), Postives = 89/137 (64.96%), Query Frame = 1


Query: 1   MMRNLVVFEHFS-SANESKCIQYIPFMDYLISTEEDVSLFENAKIIINDIGGSAKEISKL 60
           MMR+L+ FEHF      +  I YI FMDYLISTE DV+L    KIIINDIGGS +E+S+L
Sbjct: 339 MMRDLLAFEHFPIEVQNTYVIPYITFMDYLISTENDVNLLVKEKIIINDIGGSDREVSQL 398

Query: 61  FNNLGKFATVP-HSTHFNKITIGLHEHCNRRWNRASIAASY--------------AILVI 120
           FNNL KF +   ++ +FN I+  L +HC+R WN+A     +              A++++
Sbjct: 399 FNNLCKFVSSSFNNIYFNDISERLRKHCDRWWNKAKATLKHNYCNTPWAFISFLAALILL 458

Query: 121 IMTLLQTIFSGISAFPK 122
           I+T+LQT+FS ISAFPK
Sbjct: 459 ILTVLQTVFSAISAFPK 475

The following BLAST results are available for this feature:

BLAST of CmoCh05G004030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y3720_ARATH	1.1e-06	29.46	UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1	[more]

BLAST of CmoCh05G004030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM96_CUCSA	2.7e-28	51.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380080 PE=4 SV=1	[more]
A0A0A0LSF4_CUCSA	2.1e-25	50.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380060 PE=4 SV=1	[more]
A0A0A0LLX1_CUCSA	3.0e-24	48.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380590 PE=4 SV=1	[more]
A0A0A0LQ64_CUCSA	5.7e-23	52.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381630 PE=4 SV=1	[more]
A0A0A0LPJ5_CUCSA	1.4e-21	41.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380630 PE=4 SV=1	[more]

BLAST of CmoCh05G004030 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G47200.1	6.1e-08	29.46	Plant protein of unknown function (DUF247)	[more]
AT2G28580.1	3.9e-07	26.56	Plant protein of unknown function (DUF247)	[more]
AT1G67150.2	2.0e-06	25.00	Plant protein of unknown function (DUF247)	[more]
AT5G22550.2	5.7e-06	26.47	Plant protein of unknown function (DUF247)	[more]
AT2G44930.1	9.7e-06	26.67	Plant protein of unknown function (DUF247)	[more]

BLAST of CmoCh05G004030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700207809\|gb\|KGN62928.1\|	3.8e-28	51.82	hypothetical protein Csa_2G380080 [Cucumis sativus]	[more]
gi\|659088838\|ref\|XP_008445188.1\|	4.6e-26	49.64	PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]	[more]
gi\|449442190\|ref\|XP_004138865.1\|	3.0e-25	50.74	PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]	[more]
gi\|659089573\|ref\|XP_008445583.1\|	5.1e-25	50.74	PREDICTED: LOW QUALITY PROTEIN: UPF0481 protein At3g47200-like [Cucumis melo]	[more]
gi\|778674379\|ref\|XP_011650197.1\|	4.4e-24	48.18	PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004158	DUF247_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G004030.1	CmoCh05G004030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004158	Protein of unknown function DUF247, plant	PFAM	PF03140	DUF247	coord: 1..94 score: 1.4
None	No IPR available	PANTHER	PTHR31549	FAMILY NOT NAMED	coord: 1..117 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G004030	Lsi08G011840	Bottle gourd (USVL1VR-Ls)	cmolsiB731
CmoCh05G004030	CsGy2G023070	Cucumber (Gy14) v2	cgybcmoB244

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G004030	Cucumber (Gy14) v1	cgycmoB0463
CmoCh05G004030	Cucurbita maxima (Rimu)	cmacmoB199
CmoCh05G004030	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G004030	Wild cucumber (PI 183967)	cmocpiB788
CmoCh05G004030	Cucumber (Chinese Long) v2	cmocuB785
CmoCh05G004030	Melon (DHL92) v3.5.1	cmomeB716
CmoCh05G004030	Watermelon (Charleston Gray)	cmowcgB716
CmoCh05G004030	Watermelon (97103) v1	cmowmB748
CmoCh05G004030	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G004030	Cucurbita pepo (Zucchini)	cmocpeB750
CmoCh05G004030	Bottle gourd (USVL1VR-Ls)	cmolsiB730
CmoCh05G004030	Melon (DHL92) v3.6.1	cmomedB813
CmoCh05G004030	Silver-seed gourd	carcmoB0196
CmoCh05G004030	Silver-seed gourd	carcmoB1319
CmoCh05G004030	Cucumber (Chinese Long) v3	cmocucB0925
CmoCh05G004030	Watermelon (97103) v2	cmowmbB802
CmoCh05G004030	Wax gourd	cmowgoB0940
CmoCh05G004030	Cucurbita moschata (Rifu)	cmocmoB156