CmoCh02G006520 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G006520
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPsbP domain-containing protein 2
LocationCmo_Chr02 : 4068920 .. 4073018 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTCTATCCAGACCATACGCACAGAGGTAGAGTTCGAAGAGAAAGCAGCGCGGAAGTGGAACCAATCGTCTTGGGCTATGGCGACACTCCTCCAGTTTCCATCCAACATACTCTTCTTCCATGTATGCTCCATTTTCAATCTCTTAGCTTCATATTTATCGACAATGTTCATGATTCTTCGTGTTTTCTAATCTCTACTAGTGGCGATGTCCTTTGAATTGTCTTGATTAGCGCTTATGATGTAATTGATGTATTCTCGGCTGGATTTCAATGCACACGATTATCGAATTGGACATTGAATCATTAGTAGAAATCAAGAAAATGGTCTTTGTATGGACAACATTCTCCGTTCAGAGATTTGTTCTGTAAATACAGACTTTTGGATGCAAGAATTGCAAAATCGACTTGAACATGTATCCTATAAAATCCATTGCAGCATCTTTTCACTGATGTAGTGTAATATAAAAATCGTGGTGGAAGGCAAAGAAATCCCCTCTAATTTTCACTACATTGTTAAAACTTGTTGGCCCAATGTATGATATAACATGTTTAACATTTTTATGTGAAGTTCATGGCTGAAGTTGGTGAATTGAGTTAAATTCTTTTATTATGCTATAGTCAACCGAAAGTCCTAAGTCATGTTTTGTGAGATCCCACATCGGTTGGAGAGGAAAACGAAACATTTTTTATAAGGGTGTGGAAACCTCTGCTTAGCAAATGCGTTTCAAACCTTAAGGGGAAGCCCGAATGGGAAAGCCCAAAAAGGATAATATCTGCTAGCGGTGGGCTTAGATTGTTACATGTTTGTTGTGTAGTATACCTCTTCGTTCGAATTCATTATTGAGTTTTCTAGCAATTTTCTTTGTCTTTTTATCCCCTATGTTCATAACCTCTTCATCCCCAACCCATTCCCTTCCTCCCCAACTAACTTTTGTTATTTATAATGTGTAGACTCTCCAAACCCAAAGGGAAGGTACTTGGAAACATCTTGTGAGGCAAGCATGCTTTTATTTAATTGGGGGTTTTTCTTGTATTTTTCCCGAATGTTTTAAATTTAACTATATGAAGTATCAAATGAGTGATTAATAATGTTTTATTGTGTACTGTGATGAATAGATATTGTTCAATCCAGACAAAGTTGGCCTGTAGATGCGAAAGGAGGACGGCTGATTTCTTTTTATTGCTCCTCAATGAATTTTCAGGCACCATATAAATTTTCAAACGGTTCCTCGTCAAAACAAAAGCTTCCTACAAGGTTTTTGAGGGATAAGAAGTTGATTTTTGATGCAGATCCCCCTGCCCAAAAGGACATTGATCATTCATACCATATTTTGGAACAAAGGTTCAATTACATACTTCCTATGGACATTTCATTAAATTTTCCATTTTTAAGAGATCATTTTTGCTTCAATATGAAGTTATCTGTTTTATTAATTTTTCGGTCCATGCTGGATAGGTAGAACATGATATGAACTGCATATAGACTTCAAATTATGATTCTTTTTCTTTTTTATTTATTTAGGATTTGATGTCGTCTTTAATGTTTTTCAATTATCCTTTTAGGACATATTAAGCAAGAGTATTTTTGTCATTTTTCCATGATCAATAATATGTCATTTTGGTTCGTTGGAAGGTCATCTAGAGCCTGACCGTTTGATTTTTCGAACAGTTGACCATGAATAAATTTTAGCTGATATTTTTTTTGTCAAGTTTAGCTAAGAGTTTCTTGATCCTTTTGCAATTCATGACTTGAGTTACTTGCAAAAAAAATATTCAAATAAGATTGATCATCCTATCGTGGACCAAAGAACTTGAGGCAATCCGTGTTTAACCTAAAGTTTAGAGTTTAAATTGATAGATTTGAGGGTTTTGTGTTTGTGAACTCGGGGTTCACATACACAAGGGGTTAACTTGAAACTTCCATATATGGCTATGGTGAAGAAAAGAAAAATCTTTGTACATGGTATGTTACAGTTCAAAGATTCCATTGGGTATGCTGCAGCTATAGTTTTCTAGTGGATTGTTGGTCTCGGCAACAGTTTTGTTGTCTTTCCATTATGTTTTTATTTATTTATAATGAGTGAATTCTCCTTTATTCTTCCCACTGTGTGAAACTAGCTGTTCTTTTATCTTTTTGTTTTCGCATATCGATGTTTTCATCATTCAAACTCTTTTTGTTCAATAAAAATCTAGCCCACGTTTTCTGTTTAAGAAAAAATCACATTCTCTTCACCATGAATCTAATTCTCAATTTTGCAGCACAGTGCTCATGTGACCCAAAAACACATACTAGGAAGCAGCCACTCGTGCACAAGTCCTCTCCTTTACCCAAGCAGGAGAGCTCTGAATGTTTCTGTTATCTCATTGTTCTTGTATGGATTTTCACCAAGCATTTGTGAGGCCGTTTTTGCTGAAGAGTTGGAGCTTGAGAGATACACAGATTCAAAGGAGGGTTTTACTCTTCTTCGACCATCTTCTTGGGTTAAGGTATTTGGCCATCTCTCTCTGAACTAACGGTGATGCATTCTTAGGCTCTTCCTTTGAGTAGACTTTGTCTGAAACTGTGTGCTTGGTAAAGGTTGATAAAGCAGGGGCAACAGTTTTATTTGAAGAGGAGAATAAAGGAAGCAACAATGTTGGTGTTGTAGTAAATCCGGTTCGTCTTACAAGTCTTGGGGAGTTTGGAACTCCTCAGTTCGTGGCTGACAAACTTATACAGGCTGAAAAGCGAAAGGTAATTTATTTTTTGAGATTTTGGCATTTCCTACTGATTGGAACATAGACTTGCTTGGCTGTGATTTTTGTTGGATGCTTTTAAGTGCTAGGAAAAATAATATATTTGAGTGTTTTCTTTTTTCTTTGGGATAATATAACATTCGAGTTTAACTAGTATGACAGTCTTTTTGATTCGTGATCTTTTTTCTGTTGGATTGTATGTTTTGCCCCGTAAGAATGTACTCTGTCGCACTGCTGCTTCAGATACTAAATTTGTAATCTATGTGTAACGGCCCAAACCCACCGCTAGCAGATATTATCCTTTTTGGGTTTTCCCTTTCAGCCTTTCCCTCAAAGTCTTTAAAATATGTCTGCTAGGAAGAGATTTCTACACCCTTATAAAAAATGTTTCATTCTCCTCTCCAACCGATGTGGGATCTCACAATACACCCCCCTTCGGAGCCCAGCTTCCTCGCTGACACTCGTTCCCTTCTCCAATCGATGTGGGACTCCCAATCCACCCTCCTTCGAGGCCCAACGTCCTTTCTAGCACACGGCCTCGTGTTTGCCCTTCTTTGGGGCTCAGTCTCCTCGTTGGCACATCGCTCAGTGTCTGACTCTGATACCATTTGTAATAGCCCAAGCCCACCGCTAGTAGATATTGTCCTACTTGGGCTTTCCCTCAAGGTTTTTAAAACGTGTCTGCTAGGAAGAGGTTTCCACACCCTTATGAAAAATGTTTCGTTCTCCTCCTCAACCGAGATGGGATATCACATACCGTTGGACTAGCCTTGTTGCATCCAAGTTATTAACTCTTCTATTTCTTGATTCATGTTCTTTTACCCCTAAAATGGAAGGAACACTATTGTTATCCAAATCCAACATTCTAAAATGGGATTAACCGACTCCATGTCTTAGTTACTTATTCTATGAATACAGGAAAGTACAAAGGATGCAGCAGTGGTTGGTGCTGCAGAGAGATCTGGTAAGGGAGGTCTACAAGTATACGAGTTCGAGTACATGGTCGACAGCACTAGAGGGGGGATGAAGCGGGTTTTCTCCGCTGCTTTTGTGGCTTCTAAGAAGCTTTACATCCTTAACGTATCCCACTCGGACAAACCAGAGAGCCCTCTTGATTCACAGAGAAGAAAGATGTTGGAGCAGGTTCTTCATTCCTTTGATGCAGCTCCTTCCTCCTGAAAGATCATCATCAGTTCATGCTCTCCCTCCAAACTAACTCATTTCCATTCTGTCTCTGCTTTGCTTTCCATGCCACCATGGGGCTTCCATTTTTCTCTCTAATTAATATATATAAAGTTTGTTTCTTCCTATTCTTTTCCCACCTTCTATAAGTTTCAGTTCTTCCTCATCGTTTACTTGTTGG

mRNA sequence

AGTCTATCCAGACCATACGCACAGAGGTAGAGTTCGAAGAGAAAGCAGCGCGGAAGTGGAACCAATCGTCTTGGGCTATGGCGACACTCCTCCAGTTTCCATCCAACATACTCTTCTTCCATACTCTCCAAACCCAAAGGGAAGATATTGTTCAATCCAGACAAAGTTGGCCTGTAGATGCGAAAGGAGGACGGCTGATTTCTTTTTATTGCTCCTCAATGAATTTTCAGGCACCATATAAATTTTCAAACGGTTCCTCGTCAAAACAAAAGCTTCCTACAAGGTTTTTGAGGGATAAGAAGTTGATTTTTGATGCAGATCCCCCTGCCCAAAAGGACATTGATCATTCATACCATATTTTGGAACAAAGTGCTCATGTGACCCAAAAACACATACTAGGAAGCAGCCACTCGTGCACAAGTCCTCTCCTTTACCCAAGCAGGAGAGCTCTGAATGTTTCTGTTATCTCATTGTTCTTGTATGGATTTTCACCAAGCATTTGTGAGGCCGTTTTTGCTGAAGAGTTGGAGCTTGAGAGATACACAGATTCAAAGGAGGGTTTTACTCTTCTTCGACCATCTTCTTGGGTTAAGGTTGATAAAGCAGGGGCAACAGTTTTATTTGAAGAGGAGAATAAAGGAAGCAACAATGTTGGTGTTGTAGTAAATCCGGTTCGTCTTACAAGTCTTGGGGAGTTTGGAACTCCTCAGTTCGTGGCTGACAAACTTATACAGGCTGAAAAGCGAAAGGAAAGTACAAAGGATGCAGCAGTGGTTGGTGCTGCAGAGAGATCTGGTAAGGGAGGTCTACAAGTATACGAGTTCGAGTACATGGTCGACAGCACTAGAGGGGGGATGAAGCGGGTTTTCTCCGCTGCTTTTGTGGCTTCTAAGAAGCTTTACATCCTTAACGTATCCCACTCGGACAAACCAGAGAGCCCTCTTGATTCACAGAGAAGAAAGATGTTGGAGCAGGTTCTTCATTCCTTTGATGCAGCTCCTTCCTCCTGAAAGATCATCATCAGTTCATGCTCTCCCTCCAAACTAACTCATTTCCATTCTGTCTCTGCTTTGCTTTCCATGCCACCATGGGGCTTCCATTTTTCTCTCTAATTAATATATATAAAGTTTGTTTCTTCCTATTCTTTTCCCACCTTCTATAAGTTTCAGTTCTTCCTCATCGTTTACTTGTTGG

Coding sequence (CDS)

ATGGCGACACTCCTCCAGTTTCCATCCAACATACTCTTCTTCCATACTCTCCAAACCCAAAGGGAAGATATTGTTCAATCCAGACAAAGTTGGCCTGTAGATGCGAAAGGAGGACGGCTGATTTCTTTTTATTGCTCCTCAATGAATTTTCAGGCACCATATAAATTTTCAAACGGTTCCTCGTCAAAACAAAAGCTTCCTACAAGGTTTTTGAGGGATAAGAAGTTGATTTTTGATGCAGATCCCCCTGCCCAAAAGGACATTGATCATTCATACCATATTTTGGAACAAAGTGCTCATGTGACCCAAAAACACATACTAGGAAGCAGCCACTCGTGCACAAGTCCTCTCCTTTACCCAAGCAGGAGAGCTCTGAATGTTTCTGTTATCTCATTGTTCTTGTATGGATTTTCACCAAGCATTTGTGAGGCCGTTTTTGCTGAAGAGTTGGAGCTTGAGAGATACACAGATTCAAAGGAGGGTTTTACTCTTCTTCGACCATCTTCTTGGGTTAAGGTTGATAAAGCAGGGGCAACAGTTTTATTTGAAGAGGAGAATAAAGGAAGCAACAATGTTGGTGTTGTAGTAAATCCGGTTCGTCTTACAAGTCTTGGGGAGTTTGGAACTCCTCAGTTCGTGGCTGACAAACTTATACAGGCTGAAAAGCGAAAGGAAAGTACAAAGGATGCAGCAGTGGTTGGTGCTGCAGAGAGATCTGGTAAGGGAGGTCTACAAGTATACGAGTTCGAGTACATGGTCGACAGCACTAGAGGGGGGATGAAGCGGGTTTTCTCCGCTGCTTTTGTGGCTTCTAAGAAGCTTTACATCCTTAACGTATCCCACTCGGACAAACCAGAGAGCCCTCTTGATTCACAGAGAAGAAAGATGTTGGAGCAGGTTCTTCATTCCTTTGATGCAGCTCCTTCCTCCTGA
Homology
[Close]
BLAST of CmoCh02G006520 vs. Swiss-Prot
Match: PPD2_ARATH (PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPD2 PE=1 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 2.1e-62
Identity = 129/211 (61.14%), Postives = 156/211 (73.93%), Query Frame = 1 

Query: 98  SAHVTQKHILGSSHSCTSPLLYPSRRALNVSVISLFLYGFSPSICEAVFAEELELERYTD 157
           S H   K    + +  ++  +  S+R LN+S+++LF  GF   + +       EL+RYTD
Sbjct: 24  SHHKIHKFFCFAQNPSSTVSINLSKRHLNLSILTLFFNGF---LLDNKAKSMEELQRYTD 83

Query: 158 SKEGFTLLRPSSWVKVDKAGATVLFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVADKL 217
           S  GFTLL PSS+ KV+KAGA  LFEE N GSNN+GVVV+PVR+ SL +FG+PQFVADKL
Sbjct: 84  SNNGFTLLIPSSYTKVEKAGANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKL 143

Query: 218 IQAEKRKESTKDAAVVGAAERSGKGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLYIL 277
           I AEKRKESTK+A VV   ER+G  G QVYEFEY +DSTRGG+KRVFSAAFV+S KLY+L
Sbjct: 144 INAEKRKESTKEAEVVSVGERAGL-GQQVYEFEYKIDSTRGGIKRVFSAAFVSSNKLYLL 203

Query: 278 NVSHSDKPESPLDSQRRKMLEQVLHSFDAAP 309
           NV HSDKPE+PLDS  R  LEQVLHSFDA P
Sbjct: 204 NVVHSDKPENPLDSSTRMSLEQVLHSFDALP 230

[Close]
BLAST of CmoCh02G006520 vs. Swiss-Prot
Match: SIR4_ARATH (NAD-dependent protein deacylase SRT2 OS=Arabidopsis thaliana GN=SRT2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.0e-06
Identity = 33/98 (33.67%), Postives = 46/98 (46.94%), Query Frame = 1 

Query: 23  DIVQSRQSWPVDAKGGRLISFYCSSMNF---QAPYKFSNGS-SSKQKLPTRFLRDKKLIF 82
           D+  SR  +     GG L+  +     F           GS  ++ K P RFLRD+K++ 
Sbjct: 13  DLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPGGSLGNESKAPPRFLRDRKIVP 72

Query: 83  DADPPAQKDIDHSYHILEQSAHVTQKHILGSSHSCTSP 117
           DADPP  +DI   Y + EQS+ +T     G S  C  P
Sbjct: 73  DADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIP 110

[Close]
BLAST of CmoCh02G006520 vs. TrEMBL
Match: A0A0A0LMF6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336660 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 5.6e-91
Identity = 177/206 (85.92%), Postives = 187/206 (90.78%), Query Frame = 1 

Query: 110 SHSCTSPL-----LYPSRRALNVSVISLFLYGFSPSICEAVFAEELELERYTDSKEGFTL 169
           +H+   PL     L  SRRA+NVS++SLF YGFS SI  AVFAE+ ELERYTDSKEGFTL
Sbjct: 152 THTGKQPLEHKFALVTSRRAMNVSILSLFFYGFSTSISSAVFAEDFELERYTDSKEGFTL 211

Query: 170 LRPSSWVKVDKAGATVLFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK 229
           LRPSSWVKVDKAGATVLFEE NKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK
Sbjct: 212 LRPSSWVKVDKAGATVLFEEGNKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK 271

Query: 230 ESTKDAAVVGAAERSGKGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLYILNVSHSDK 289
           ESTKDAAVVG AERSG+GGLQVYEFEY VDSTRGGMKR+FSAAFVASKKLYILN+SHSDK
Sbjct: 272 ESTKDAAVVGVAERSGEGGLQVYEFEYTVDSTRGGMKRIFSAAFVASKKLYILNISHSDK 331

Query: 290 PESPLDSQRRKMLEQVLHSFDAAPSS 311
           PESPLDSQ+R MLEQVLHSFDAAPSS
Sbjct: 332 PESPLDSQKRMMLEQVLHSFDAAPSS 357

[Close]
BLAST of CmoCh02G006520 vs. TrEMBL
Match: A0A0F7GYN4_9ROSI (PsbP domain-OEC23 like protein OS=Hypseocharis bilobata GN=PPD2 PE=2 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 5.9e-80
Identity = 164/267 (61.42%), Postives = 193/267 (72.28%), Query Frame = 1 

Query: 48  MNFQAPYKFSNGSSSKQKLPTRFLRDKKLIFD------ADPPAQKDIDHSYHILEQSAHV 107
           M  Q  +  S    S+   P+      K IF       +  P+     H +H    S   
Sbjct: 1   MALQVCFALSYPKQSQPHTPSPTSSSPKSIFSISLPKASSSPSSSSSTHKHHTQNYSNDP 60

Query: 108 TQKHILGSSHSCTSPLLYPSRRALNVSVISLFLYGFSPSICEAVFAEELELERYTDSKEG 167
            Q+ +L  S S         +R LN+S+++LF  GF P++ ++V AE +ELERYTDSKEG
Sbjct: 61  HQELLLSLSLS---------KRNLNLSILALFFNGFLPNLSKSVCAEGMELERYTDSKEG 120

Query: 168 FTLLRPSSWVKVDKAGATVLFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAE 227
           FTLL+PSSWVKVDKAGATVLFEE  KGSNNVGVVVNPVRLTSLGEFGTP+FV DKLIQAE
Sbjct: 121 FTLLKPSSWVKVDKAGATVLFEEVGKGSNNVGVVVNPVRLTSLGEFGTPEFVVDKLIQAE 180

Query: 228 KRKESTKDAAVVGAAERSGKGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLYILNVSH 287
           KRKESTKD  V+G AERS +GGLQVYEFEY VDSTRGG+KR+FSAAFVASKKLY+LN++H
Sbjct: 181 KRKESTKDTEVIGVAERSDQGGLQVYEFEYKVDSTRGGLKRIFSAAFVASKKLYLLNIAH 240

Query: 288 SDKPESPLDSQRRKMLEQVLHSFDAAP 309
           SDKPESPLD+  R +LEQVLHSFDAAP
Sbjct: 241 SDKPESPLDTHTRMILEQVLHSFDAAP 258

[Close]
BLAST of CmoCh02G006520 vs. TrEMBL
Match: A0A0F7GXN9_9ROSI (PsbP domain-OEC23 like protein (Fragment) OS=Pelargonium echinatum GN=PPD2 PE=2 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 7.6e-80
Identity = 150/190 (78.95%), Postives = 174/190 (91.58%), Query Frame = 1 

Query: 121 SRRALNVSVISLFLYGFSPSICEAVFAEELELERYTDSKEGFTLLRPSSWVKVDKAGATV 180
           S+R+LN+S+++LF  GF P++ +  +AEELEL+RYTDSKEGFTLL PSS+ KV+KAGATV
Sbjct: 29  SKRSLNLSILALFFNGFLPNLSKCAYAEELELQRYTDSKEGFTLLIPSSFNKVEKAGATV 88

Query: 181 LFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRKESTKDAAVVGAAERSG 240
           LFEEE KGSNNVGVVVNPVRL+SLGEFGTP+FV +KLIQAEKRKESTKDA V+G AERSG
Sbjct: 89  LFEEEGKGSNNVGVVVNPVRLSSLGEFGTPEFVVEKLIQAEKRKESTKDAEVIGVAERSG 148

Query: 241 KGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLYILNVSHSDKPESPLDSQRRKMLEQV 300
           +GGLQVYEFEY VDSTRGGMKR+FSAAFVASKKLY+LN++HSDKPESPLD+Q R MLEQV
Sbjct: 149 QGGLQVYEFEYKVDSTRGGMKRIFSAAFVASKKLYLLNIAHSDKPESPLDTQTRMMLEQV 208

Query: 301 LHSFDAAPSS 311
           LHSFDAAP +
Sbjct: 209 LHSFDAAPQT 218

[Close]
BLAST of CmoCh02G006520 vs. TrEMBL
Match: A0A0F7CYP4_9ROSI (PsbP domain-OEC23 like protein OS=Pelargonium tetragonum GN=PPD2 PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 1.7e-79
Identity = 150/188 (79.79%), Postives = 172/188 (91.49%), Query Frame = 1 

Query: 121 SRRALNVSVISLFLYGFSPSICEAVFAEELELERYTDSKEGFTLLRPSSWVKVDKAGATV 180
           S+R+LN+S+++LF  GF P++ +  +AEELEL+RYTDSKEGFTLL PSS+ KV+KAGATV
Sbjct: 67  SKRSLNLSILALFFNGFLPNLSQCAYAEELELQRYTDSKEGFTLLIPSSFNKVEKAGATV 126

Query: 181 LFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRKESTKDAAVVGAAERSG 240
           LFEEE KGSNNVGVVVNPVRL+SLGEFGTP+FV DKLIQAEKRKEST DA V+G AERSG
Sbjct: 127 LFEEEGKGSNNVGVVVNPVRLSSLGEFGTPEFVVDKLIQAEKRKESTVDAEVIGVAERSG 186

Query: 241 KGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLYILNVSHSDKPESPLDSQRRKMLEQV 300
           +GGLQVYEFEY VDSTRGGMKR+FSAAFVASKKLY+LN++HSDKPESPLD+Q R MLEQV
Sbjct: 187 QGGLQVYEFEYKVDSTRGGMKRIFSAAFVASKKLYLLNIAHSDKPESPLDAQTRTMLEQV 246

Query: 301 LHSFDAAP 309
           LHSFDAAP
Sbjct: 247 LHSFDAAP 254

[Close]
BLAST of CmoCh02G006520 vs. TrEMBL
Match: A0A0F7GZ90_9ROSI (PsbP domain-OEC23 like protein (Fragment) OS=Pelargonium myrrhifolium GN=PPD2 PE=2 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 6.5e-79
Identity = 149/190 (78.42%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 121 SRRALNVSVISLFLYGFSPSICEAVFAEELELERYTDSKEGFTLLRPSSWVKVDKAGATV 180
           S+R+LN+S+++LF  GF P++ +  +AEELEL+RYTDSKEGFTLL PSS+ KV+KAGATV
Sbjct: 38  SKRSLNLSILALFFNGFLPNLSKYAYAEELELQRYTDSKEGFTLLIPSSFNKVEKAGATV 97

Query: 181 LFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRKESTKDAAVVGAAERSG 240
           LFEEE KGSNNVGVVVNPVRL+SLG+FGTP+FV DKLIQAEKRKEST DA V+G AERSG
Sbjct: 98  LFEEEGKGSNNVGVVVNPVRLSSLGDFGTPEFVVDKLIQAEKRKESTVDAEVIGVAERSG 157

Query: 241 KGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLYILNVSHSDKPESPLDSQRRKMLEQV 300
           +GGLQVYEFEY VDSTRGGMKR+FSAAFVASKKLY+LN++HSDKPESPLD+Q R MLEQV
Sbjct: 158 QGGLQVYEFEYKVDSTRGGMKRIFSAAFVASKKLYLLNIAHSDKPESPLDAQTRTMLEQV 217

Query: 301 LHSFDAAPSS 311
           LHSFDAAP +
Sbjct: 218 LHSFDAAPQT 227

[Close]
BLAST of CmoCh02G006520 vs. TAIR10
Match: AT2G28605.1 (AT2G28605.1 Photosystem II reaction center PsbP family protein)

HSP 1 Score: 240.7 bits (613), Expect = 1.2e-63
Identity = 129/211 (61.14%), Postives = 156/211 (73.93%), Query Frame = 1 

Query: 98  SAHVTQKHILGSSHSCTSPLLYPSRRALNVSVISLFLYGFSPSICEAVFAEELELERYTD 157
           S H   K    + +  ++  +  S+R LN+S+++LF  GF   + +       EL+RYTD
Sbjct: 24  SHHKIHKFFCFAQNPSSTVSINLSKRHLNLSILTLFFNGF---LLDNKAKSMEELQRYTD 83

Query: 158 SKEGFTLLRPSSWVKVDKAGATVLFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVADKL 217
           S  GFTLL PSS+ KV+KAGA  LFEE N GSNN+GVVV+PVR+ SL +FG+PQFVADKL
Sbjct: 84  SNNGFTLLIPSSYTKVEKAGANALFEELNNGSNNIGVVVSPVRIKSLDQFGSPQFVADKL 143

Query: 218 IQAEKRKESTKDAAVVGAAERSGKGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLYIL 277
           I AEKRKESTK+A VV   ER+G  G QVYEFEY +DSTRGG+KRVFSAAFV+S KLY+L
Sbjct: 144 INAEKRKESTKEAEVVSVGERAGL-GQQVYEFEYKIDSTRGGIKRVFSAAFVSSNKLYLL 203

Query: 278 NVSHSDKPESPLDSQRRKMLEQVLHSFDAAP 309
           NV HSDKPE+PLDS  R  LEQVLHSFDA P
Sbjct: 204 NVVHSDKPENPLDSSTRMSLEQVLHSFDALP 230

[Close]
BLAST of CmoCh02G006520 vs. TAIR10
Match: AT5G09230.7 (AT5G09230.7 sirtuin 2)

HSP 1 Score: 52.8 bits (125), Expect = 4.5e-07
Identity = 33/98 (33.67%), Postives = 46/98 (46.94%), Query Frame = 1 

Query: 23  DIVQSRQSWPVDAKGGRLISFYCSSMNF---QAPYKFSNGS-SSKQKLPTRFLRDKKLIF 82
           D+  SR  +     GG L+  +     F           GS  ++ K P RFLRD+K++ 
Sbjct: 16  DLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPGGSLGNESKAPPRFLRDRKIVP 75

Query: 83  DADPPAQKDIDHSYHILEQSAHVTQKHILGSSHSCTSP 117
           DADPP  +DI   Y + EQS+ +T     G S  C  P
Sbjct: 76  DADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIP 113

[Close]
BLAST of CmoCh02G006520 vs. NCBI nr
Match: gi|659121879|ref|XP_008460858.1| (PREDICTED: psbP domain-containing protein 2, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 369.8 bits (948), Expect = 4.7e-99
Identity = 189/215 (87.91%), Postives = 200/215 (93.02%), Query Frame = 1 

Query: 96  EQSAHVTQKHILGSSHSCTSPLLYPSRRALNVSVISLFLYGFSPSICEAVFAEELELERY 155
           + SA VTQ+H+LGSSH  T+  L  SRRALNVSV+S+FLYGFSPSI  AVFAE+ ELERY
Sbjct: 123 QHSASVTQEHMLGSSHLSTNSFLLLSRRALNVSVLSMFLYGFSPSISSAVFAEDFELERY 182

Query: 156 TDSKEGFTLLRPSSWVKVDKAGATVLFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVAD 215
           TDSKEGFTLLRPSSWVKVDKAGATVLFEE NKGSNNVGVVVNPVRLTSLGEFGTPQFVAD
Sbjct: 183 TDSKEGFTLLRPSSWVKVDKAGATVLFEEGNKGSNNVGVVVNPVRLTSLGEFGTPQFVAD 242

Query: 216 KLIQAEKRKESTKDAAVVGAAERSGKGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLY 275
           KLIQAEKRKESTKDAAVVG AERSG+GGLQVYEFEY VDSTRGGMKR+FSAAFVASKKLY
Sbjct: 243 KLIQAEKRKESTKDAAVVGVAERSGEGGLQVYEFEYTVDSTRGGMKRIFSAAFVASKKLY 302

Query: 276 ILNVSHSDKPESPLDSQRRKMLEQVLHSFDAAPSS 311
           ILN+SHSDKPESPLDSQ+R MLEQVLHSFDAAPSS
Sbjct: 303 ILNISHSDKPESPLDSQKRMMLEQVLHSFDAAPSS 337

[Close]
BLAST of CmoCh02G006520 vs. NCBI nr
Match: gi|659121877|ref|XP_008460857.1| (PREDICTED: psbP domain-containing protein 2, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 369.8 bits (948), Expect = 4.7e-99
Identity = 189/215 (87.91%), Postives = 200/215 (93.02%), Query Frame = 1 

Query: 96  EQSAHVTQKHILGSSHSCTSPLLYPSRRALNVSVISLFLYGFSPSICEAVFAEELELERY 155
           + SA VTQ+H+LGSSH  T+  L  SRRALNVSV+S+FLYGFSPSI  AVFAE+ ELERY
Sbjct: 145 QHSASVTQEHMLGSSHLSTNSFLLLSRRALNVSVLSMFLYGFSPSISSAVFAEDFELERY 204

Query: 156 TDSKEGFTLLRPSSWVKVDKAGATVLFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVAD 215
           TDSKEGFTLLRPSSWVKVDKAGATVLFEE NKGSNNVGVVVNPVRLTSLGEFGTPQFVAD
Sbjct: 205 TDSKEGFTLLRPSSWVKVDKAGATVLFEEGNKGSNNVGVVVNPVRLTSLGEFGTPQFVAD 264

Query: 216 KLIQAEKRKESTKDAAVVGAAERSGKGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLY 275
           KLIQAEKRKESTKDAAVVG AERSG+GGLQVYEFEY VDSTRGGMKR+FSAAFVASKKLY
Sbjct: 265 KLIQAEKRKESTKDAAVVGVAERSGEGGLQVYEFEYTVDSTRGGMKRIFSAAFVASKKLY 324

Query: 276 ILNVSHSDKPESPLDSQRRKMLEQVLHSFDAAPSS 311
           ILN+SHSDKPESPLDSQ+R MLEQVLHSFDAAPSS
Sbjct: 325 ILNISHSDKPESPLDSQKRMMLEQVLHSFDAAPSS 359

[Close]
BLAST of CmoCh02G006520 vs. NCBI nr
Match: gi|449459216|ref|XP_004147342.1| (PREDICTED: psbP domain-containing protein 2, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 8.1e-91
Identity = 177/206 (85.92%), Postives = 187/206 (90.78%), Query Frame = 1 

Query: 110 SHSCTSPL-----LYPSRRALNVSVISLFLYGFSPSICEAVFAEELELERYTDSKEGFTL 169
           +H+   PL     L  SRRA+NVS++SLF YGFS SI  AVFAE+ ELERYTDSKEGFTL
Sbjct: 152 THTGKQPLEHKFALVTSRRAMNVSILSLFFYGFSTSISSAVFAEDFELERYTDSKEGFTL 211

Query: 170 LRPSSWVKVDKAGATVLFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK 229
           LRPSSWVKVDKAGATVLFEE NKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK
Sbjct: 212 LRPSSWVKVDKAGATVLFEEGNKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK 271

Query: 230 ESTKDAAVVGAAERSGKGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLYILNVSHSDK 289
           ESTKDAAVVG AERSG+GGLQVYEFEY VDSTRGGMKR+FSAAFVASKKLYILN+SHSDK
Sbjct: 272 ESTKDAAVVGVAERSGEGGLQVYEFEYTVDSTRGGMKRIFSAAFVASKKLYILNISHSDK 331

Query: 290 PESPLDSQRRKMLEQVLHSFDAAPSS 311
           PESPLDSQ+R MLEQVLHSFDAAPSS
Sbjct: 332 PESPLDSQKRMMLEQVLHSFDAAPSS 357

[Close]
BLAST of CmoCh02G006520 vs. NCBI nr
Match: gi|778670312|ref|XP_011649436.1| (PREDICTED: psbP domain-containing protein 2, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 342.4 bits (877), Expect = 8.1e-91
Identity = 177/206 (85.92%), Postives = 187/206 (90.78%), Query Frame = 1 

Query: 110 SHSCTSPL-----LYPSRRALNVSVISLFLYGFSPSICEAVFAEELELERYTDSKEGFTL 169
           +H+   PL     L  SRRA+NVS++SLF YGFS SI  AVFAE+ ELERYTDSKEGFTL
Sbjct: 130 THTGKQPLEHKFALVTSRRAMNVSILSLFFYGFSTSISSAVFAEDFELERYTDSKEGFTL 189

Query: 170 LRPSSWVKVDKAGATVLFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK 229
           LRPSSWVKVDKAGATVLFEE NKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK
Sbjct: 190 LRPSSWVKVDKAGATVLFEEGNKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRK 249

Query: 230 ESTKDAAVVGAAERSGKGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLYILNVSHSDK 289
           ESTKDAAVVG AERSG+GGLQVYEFEY VDSTRGGMKR+FSAAFVASKKLYILN+SHSDK
Sbjct: 250 ESTKDAAVVGVAERSGEGGLQVYEFEYTVDSTRGGMKRIFSAAFVASKKLYILNISHSDK 309

Query: 290 PESPLDSQRRKMLEQVLHSFDAAPSS 311
           PESPLDSQ+R MLEQVLHSFDAAPSS
Sbjct: 310 PESPLDSQKRMMLEQVLHSFDAAPSS 335

[Close]
BLAST of CmoCh02G006520 vs. NCBI nr
Match: gi|1009172590|ref|XP_015867355.1| (PREDICTED: psbP domain-containing protein 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 310.1 bits (793), Expect = 4.5e-81
Identity = 153/195 (78.46%), Postives = 175/195 (89.74%), Query Frame = 1 

Query: 114 TSPLLYPSRRALNVSVISLFLYGFSPSICEAVFAEELELERYTDSKEGFTLLRPSSWVKV 173
           T P +  S+R L +S +SLFL+GF P++  A+ AE+LELERYTDSKEGFTLLRPSSW+KV
Sbjct: 46  TLPSICLSKRELGLSALSLFLHGFLPNLPSAISAEKLELERYTDSKEGFTLLRPSSWIKV 105

Query: 174 DKAGATVLFEEENKGSNNVGVVVNPVRLTSLGEFGTPQFVADKLIQAEKRKESTKDAAVV 233
           DKAGATVLFEEENKGSNNVGVVVNPVRL +LGEFG+PQFVADKLIQAE+RKESTK+A V+
Sbjct: 106 DKAGATVLFEEENKGSNNVGVVVNPVRLKTLGEFGSPQFVADKLIQAERRKESTKEAEVI 165

Query: 234 GAAERSGKGGLQVYEFEYMVDSTRGGMKRVFSAAFVASKKLYILNVSHSDKPESPLDSQR 293
           G  ER G+GGLQVYEFEY VDSTRGGMK++FSAAFVASKKLYILN+SHSDKPESPLD+  
Sbjct: 166 GVTERLGQGGLQVYEFEYKVDSTRGGMKKIFSAAFVASKKLYILNISHSDKPESPLDTHT 225

Query: 294 RKMLEQVLHSFDAAP 309
           R +LEQVLHSFD+AP
Sbjct: 226 RSVLEQVLHSFDSAP 240

The following BLAST results are available for this feature:
BLAST of CmoCh02G006520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPD2_ARATH2.1e-6261.14PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPD2 ... [more]
SIR4_ARATH8.0e-0633.67NAD-dependent protein deacylase SRT2 OS=Arabidopsis thaliana GN=SRT2 PE=2 SV=1[more]
BLAST of CmoCh02G006520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMF6_CUCSA5.6e-9185.92Uncharacterized protein OS=Cucumis sativus GN=Csa_2G336660 PE=4 SV=1[more]
A0A0F7GYN4_9ROSI5.9e-8061.42PsbP domain-OEC23 like protein OS=Hypseocharis bilobata GN=PPD2 PE=2 SV=1[more]
A0A0F7GXN9_9ROSI7.6e-8078.95PsbP domain-OEC23 like protein (Fragment) OS=Pelargonium echinatum GN=PPD2 PE=2 ... [more]
A0A0F7CYP4_9ROSI1.7e-7979.79PsbP domain-OEC23 like protein OS=Pelargonium tetragonum GN=PPD2 PE=2 SV=1[more]
A0A0F7GZ90_9ROSI6.5e-7978.42PsbP domain-OEC23 like protein (Fragment) OS=Pelargonium myrrhifolium GN=PPD2 PE... [more]
BLAST of CmoCh02G006520 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G28605.11.2e-6361.14 Photosystem II reaction center PsbP family protein[more]
AT5G09230.74.5e-0733.67 sirtuin 2[more]
BLAST of CmoCh02G006520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659121879|ref|XP_008460858.1|4.7e-9987.91PREDICTED: psbP domain-containing protein 2, chloroplastic isoform X2 [Cucumis m... [more]
gi|659121877|ref|XP_008460857.1|4.7e-9987.91PREDICTED: psbP domain-containing protein 2, chloroplastic isoform X1 [Cucumis m... [more]
gi|449459216|ref|XP_004147342.1|8.1e-9185.92PREDICTED: psbP domain-containing protein 2, chloroplastic isoform X1 [Cucumis s... [more]
gi|778670312|ref|XP_011649436.1|8.1e-9185.92PREDICTED: psbP domain-containing protein 2, chloroplastic isoform X2 [Cucumis s... [more]
gi|1009172590|ref|XP_015867355.1|4.5e-8178.46PREDICTED: psbP domain-containing protein 2, chloroplastic [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002683PsbP
IPR016123Mog1/PsbP_a/b/a-sand
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030154 cell differentiation
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0015979 photosynthesis
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0009507 chloroplast
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G006520.1CmoCh02G006520.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002683PsbP familyPFAMPF01789PsbPcoord: 148..305
score: 1.7
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichGENE3DG3DSA:3.40.1000.10coord: 152..305
score: 9.9
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichunknownSSF55724Mog1p/PsbP-likecoord: 153..306
score: 6.8
NoneNo IPR availablePANTHERPTHR31407FAMILY NOT NAMEDcoord: 115..305
score: 6.0E
NoneNo IPR availablePANTHERPTHR31407:SF3PSBP DOMAIN-CONTAINING PROTEIN 2, CHLOROPLASTICcoord: 115..305
score: 6.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G006520Csa2G336660Cucumber (Chinese Long) v2cmocuB575
CmoCh02G006520CSPI02G16250Wild cucumber (PI 183967)cmocpiB581
CmoCh02G006520CsaV3_2G019570Cucumber (Chinese Long) v3cmocucB0680
CmoCh02G006520Carg11714Silver-seed gourdcarcmoB1422
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G006520Melon (DHL92) v3.5.1cmomeB540
CmoCh02G006520Watermelon (Charleston Gray)cmowcgB540
CmoCh02G006520Watermelon (97103) v1cmowmB578
CmoCh02G006520Cucurbita pepo (Zucchini)cmocpeB573
CmoCh02G006520Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G006520Bottle gourd (USVL1VR-Ls)cmolsiB527
CmoCh02G006520Cucumber (Gy14) v2cgybcmoB215
CmoCh02G006520Melon (DHL92) v3.6.1cmomedB618
CmoCh02G006520Silver-seed gourdcarcmoB0978
CmoCh02G006520Watermelon (97103) v2cmowmbB605
CmoCh02G006520Wax gourdcmowgoB0739
CmoCh02G006520Cucurbita moschata (Rifu)cmocmoB414
CmoCh02G006520Cucumber (Gy14) v1cgycmoB0638
CmoCh02G006520Cucurbita maxima (Rimu)cmacmoB564
CmoCh02G006520Cucurbita maxima (Rimu)cmacmoB619