CmoCh02G005390 (gene) Cucurbita moschata (Rifu)

NameCmoCh02G005390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 3063936 .. 3064211 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACCTCACTCCTACTCTTCTTCTTCTTCTTCCTTTTCCTTTTACTACTCCGACCCCGACGGAGTTCACAAGGCATCGTCGAGGTCGCCGAAGAAGGCGGTTGCACCTCCGCCTCCGATGCCTCCGAGGGTTTACAAAGTGGAGCCCATCGAGTTTCGAGATGTCGTTCAGAAGCTAACTTCACCTCCCGAGTATCTAGATCCTCGCCTTAAAGCCATGCCGGCTCCACGCCCAAATCTCTCCAATCCGCCGCCGTGCTCTTCCCGCCGCTGA

mRNA sequence

ATGGAACCTCACTCCTACTCTTCTTCTTCTTCTTCCTTTTCCTTTTACTACTCCGACCCCGACGGAGTTCACAAGGCATCGTCGAGGTCGCCGAAGAAGGCGGTTGCACCTCCGCCTCCGATGCCTCCGAGGGTTTACAAAGTGGAGCCCATCGAGTTTCGAGATGTCGTTCAGAAGCTAACTTCACCTCCCGAGTATCTAGATCCTCGCCTTAAAGCCATGCCGGCTCCACGCCCAAATCTCTCCAATCCGCCGCCGTGCTCTTCCCGCCGCTGA

Coding sequence (CDS)

ATGGAACCTCACTCCTACTCTTCTTCTTCTTCTTCCTTTTCCTTTTACTACTCCGACCCCGACGGAGTTCACAAGGCATCGTCGAGGTCGCCGAAGAAGGCGGTTGCACCTCCGCCTCCGATGCCTCCGAGGGTTTACAAAGTGGAGCCCATCGAGTTTCGAGATGTCGTTCAGAAGCTAACTTCACCTCCCGAGTATCTAGATCCTCGCCTTAAAGCCATGCCGGCTCCACGCCCAAATCTCTCCAATCCGCCGCCGTGCTCTTCCCGCCGCTGA
BLAST of CmoCh02G005390 vs. TrEMBL
Match: A0A0A0LPS3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271490 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-10
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1

Query: 29 RSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKLTSPPEYLDPRLKAMPAPRPNLSN 84
          ++ KK VAPP P PP+VYKV+PI FRDVVQKLT+ P++ D RL+AMP PRP+L++
Sbjct: 9  KTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPDLAD 63

BLAST of CmoCh02G005390 vs. NCBI nr
Match: gi|700206837|gb|KGN61956.1| (hypothetical protein Csa_2G271490 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-10
Identity = 35/55 (63.64%), Postives = 46/55 (83.64%), Query Frame = 1

Query: 29 RSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKLTSPPEYLDPRLKAMPAPRPNLSN 84
          ++ KK VAPP P PP+VYKV+PI FRDVVQKLT+ P++ D RL+AMP PRP+L++
Sbjct: 9  KTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPDLAD 63

BLAST of CmoCh02G005390 vs. NCBI nr
Match: gi|1009145602|ref|XP_015890424.1| (PREDICTED: uncharacterized protein LOC107425011 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-06
Identity = 41/90 (45.56%), Postives = 50/90 (55.56%), Query Frame = 1

Query: 6  YSSSSSSFSF----------------YYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVE 65
          YSSSSSS S+                YYS    V KA  +  KK +AP PP PPRVYKV+
Sbjct: 4  YSSSSSSASYLSHNIQETKVAKRTLPYYSSLHSVRKAPVKPWKKPIAPLPPTPPRVYKVD 63

Query: 66 PIEFRDVVQKLTSPPEYLDPRLKAMPAPRP 80
          P+ FR++VQK T+ PEY+  R     AP P
Sbjct: 64 PMNFRELVQKSTAAPEYVQGRRLQSVAPPP 93

BLAST of CmoCh02G005390 vs. NCBI nr
Match: gi|645219837|ref|XP_008237576.1| (PREDICTED: uncharacterized protein LOC103336308 [Prunus mume])

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-06
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1

Query: 1  MEPHSYS-SSSSSFSFYYSDPDGVHKASSRSPKK-AVAPPPPMPPRVYKVEPIEFRDVVQ 60
          M+P   S S+S+S  +  S    V ++SS+  +K AVAP PP PPR+YKV+PI F+D+VQ
Sbjct: 1  MQPTKGSISNSTSLPYQQSSLHSVRRSSSKPWRKPAVAPLPPTPPRIYKVDPINFKDLVQ 60

Query: 61 KLTSPPEYLDPRLKAMPAPRP 80
           LT PPE L+ R     AP P
Sbjct: 61 SLTGPPESLEARTLQSVAPAP 81

BLAST of CmoCh02G005390 vs. NCBI nr
Match: gi|694428426|ref|XP_009341783.1| (PREDICTED: uncharacterized protein LOC103933821 [Pyrus x bretschneideri])

HSP 1 Score: 59.3 bits (142), Expect = 4.0e-06
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1

Query: 8  SSSSSFSFYYSDPDGVHKASSRSPKK-AVAPPPPMPPRVYKVEPIEFRDVVQKLTSPPEY 67
          S+S +  ++ S    V K+SS+  KK AVAP PP PPR+YKV+PI FR++VQ LT  PE+
Sbjct: 20 SNSKNLPYHQSSLHSVRKSSSKPWKKPAVAPVPPTPPRIYKVDPINFRELVQSLTCAPEF 79

Query: 68 LDPRLKAMPAPRP 80
          ++ R     AP P
Sbjct: 80 METRSLQSVAPSP 92

BLAST of CmoCh02G005390 vs. NCBI nr
Match: gi|694416210|ref|XP_009336239.1| (PREDICTED: uncharacterized protein LOC103928862 [Pyrus x bretschneideri])

HSP 1 Score: 58.5 bits (140), Expect = 6.9e-06
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1

Query: 7   SSSSSSFSFYYSDPDGVHKASSRSPKK-AVAPPPPMPPRVYKVEPIEFRDVVQKLTSPPE 66
           +S+S     ++S    V K+SS+  KK AVAP PP PPR+YKV+PI FR++VQ+LT  PE
Sbjct: 31  TSNSKQLPHHHSSLHSVQKSSSKPWKKPAVAPLPPTPPRIYKVDPINFRELVQRLTCAPE 90

Query: 67  YLDPRLKAMPAPRP 80
           +++ R     AP P
Sbjct: 91  FMETRSLQSVAPPP 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LPS3_CUCSA1.9e-1063.64Uncharacterized protein OS=Cucumis sativus GN=Csa_2G271490 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700206837|gb|KGN61956.1|2.7e-1063.64hypothetical protein Csa_2G271490 [Cucumis sativus][more]
gi|1009145602|ref|XP_015890424.1|1.8e-0645.56PREDICTED: uncharacterized protein LOC107425011 isoform X1 [Ziziphus jujuba][more]
gi|645219837|ref|XP_008237576.1|4.0e-0648.15PREDICTED: uncharacterized protein LOC103336308 [Prunus mume][more]
gi|694428426|ref|XP_009341783.1|4.0e-0647.95PREDICTED: uncharacterized protein LOC103933821 [Pyrus x bretschneideri][more]
gi|694416210|ref|XP_009336239.1|6.9e-0647.30PREDICTED: uncharacterized protein LOC103928862 [Pyrus x bretschneideri][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008889VQ
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G005390.1CmoCh02G005390.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 40..61
score: 9.
NoneNo IPR availablePANTHERPTHR34794FAMILY NOT NAMEDcoord: 2..86
score: 1.7
NoneNo IPR availablePANTHERPTHR34794:SF1SUBFAMILY NOT NAMEDcoord: 2..86
score: 1.7

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G005390MELO3C020843Melon (DHL92) v3.5.1cmomeB528
CmoCh02G005390Cp4.1LG05g11510Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G005390CsaV3_2G016320Cucumber (Chinese Long) v3cmocucB0690
The following gene(s) are paralogous to this gene:

None