CmaCh17G000970 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: CDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGAGAAGTGGGGCACTATATAAGGAGATAGCCGATTCCCCTGCACTTTCATACCGACGGTTGGTTCCCTGTTTTAGAGATTGATTGTTCGTTTCTCCGGCCAACTCCAGGCCAATCCACGAATTTTTTCAGCCGCTTCAATCTCACCTTCAAATGACTCATATCCTTCTGAATCTTTGATTCATTTTGTTTTCTTGTTTCTTGATTTCGGATTTTGAGGTGTTTTAATTCATTGATTTTGAAGATTTCTTGAAATCTTTCAAGTTTGCTTACCTTGACTCAGATCTCTACGAGGAAACCAAAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCACCGGCGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGCGAAAGGTTCGTCTATCTTCTTTCTTCTTTATTTTTCGTTTTGAATTTTGTAATGCAATTGATATTTCTTTTGGTATTGGATTCTGGTCAGAGATGCTAAGGCGCTACAAGAAAAGGCAGCAAAGAAGGCGGCTCAGGCGGCATCGGAAGGTAATTCATCCGGAGGTAAAAGTAGCGCTAAAAAGTAGATGGTCCTGGATTTAGAATCGTGAACACTAAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGAAATAAATATTTGTATGTTTCAGTAATGTGAATGGATATATCTCTTATGCTGTCAACGTTAATTGTTGATGATTGTTTTCCATGATCTTAGTACTCTTGATATGTTGTGTTGAGGTAATTATGCTGTTAATGCGGATTTCGTGAAATTTGAATCTAGATGAAAAGTTCTTCTATTATGATCTAAACACATAGTTCACCAAGAATTCGTCTCATAGGGTCACATGCCAGTATTTGTCTAGGGATAATAGCAAATAGTTATTGTCCTATCATTGAGTAGGAAATTTCTATGGTCAACAATTTAGTTCTTGATCCACAAGGGAGAGCCATTAAAATGGGGCCAGAACTCACATTTCTTCCCAAGTTCAACACCTTTAAAAATCCTCTTGTTCCTTCCGAACTTTGTGTACCACAAAATAGCGAAGGAAGAGACTAGCCATGTTACAACACTTCAGGTTCTAAAACCTATGTACATGTTCTTAGTGACCAAGATTCTATGCTCGTATTTACTACCAAAATCCTGTGCCACATTGCTTTAGGTTCTTAAGGGGCACCCTCACAACTCATGAGCCAGAGAGGACATAATTCTTGTGGGACAAATTTTCTACGCCCAACCTGCCATTCTTGCACATTTTCTGGAAACGACCTCCCAATATACCAAATGAGAACCACCCGTTTCGTCTACTCTTTTCGAAAAAGAAAAGCCTCTCATAATATTCTCCAACTTATTGCAAACTGATGATGGAATCCTAAAGAAAGATTAGATCAAAGAGAGTCGAAGAAGGTTTCTTCCAAGCAAATAAACATTTTTTGAATTCAAGGGCATAACTATACCACCAGGAAAACAGATCCCGGTCAATTAAGGTCGTGATTTATAGTATTGCTCTTGCTCTGCCCTCTTCTGCTTCAAGGAGGTGCTTATAGGCTTCAATTCTTCGTGTCATCCTTATTGACAGTGGTTCGAACAACTTAAACTGCATCACGTTTTTAGCCAAATATTTTTTATAAGAACCGTTTTTTAACCTTCAACCATTGAATCCTAGAACAATTAAGATCTCAGATTATGATTAAGGGAAAGGCTTAACATTTCACACCCCACCTGGCTAGATAAAGATGGAAAAGATTTCCCCATTACAATACAGTTCCTATGTTGGATTTAAGATCTGAAATGTCTTATTAAAAAAAGGACCTGAAATGTATTCAAAGACCTGTAAAATAAGATTGAGATTAAGATAAACAAAGATATCCTCCCTTTGGCATAAGAAGATAGTCTCATTTACAGCATTGCCTTTTAGAATTCAAGGACATAACTATACCACCAGGAAAACAGATCCCGGTCAATTAAGGTTGCGATTTATAGTATTTCTCTTCCTCTGCCGTCTTTTGCTTCTACATTATAGGCTTCAATTCTACGAGTCATCCTTATCGGCGGTGGTTCGAACAACTTACCAAATATTGGCTTCCTGCTATAGTTTTTTTGTTTAGATTGCAGTAGATGTTTGTGGAAAGCCAGAGAGCTTTTAAAAGTTCTATTTTTTACAGGCATTTAGTACTGCTGACATTGGGATGGAAAGTCCAGAAATGAACAGCTTCCAGGATGGTTAGTTTGAAATAAATTTGCTGAAAATGAGATGCTTTTGTTATTAGCATGTGGGAATTTGTGAGATA ATGGAAGAGAAATCTCTACGAGGAAACCAAAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCACCGGCGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGCGAAAGAGATGCTAAGGCGCTACAAGAAAAGGCAGCAAAGAAGGCGGCTCAGGCGGCATCGGAAGGTAATTCATCCGGAGGTAAAAGTAGCGCTAAAAAGTAGATGGTCCTGGATTTAGAATCGTGAACACTAAGATCTCGTGGTTCTTAGACTGTTTGATATTGGAGAAATAAATATTTGTATGTTTCAGTAATGTGAATGGATATATCTCTTATGCTGTCAACGTTAATTGTTGATGATTGTTTTCCATGATCTTAGTACTCTTGATATGTTGTGTTGAGGTAATTATGCTGTTAATGCGGATTTCGTGAAATTTGAATCTAGATGAAAAGTTCTTCTATTATGATCTAAACACATAGTTCACCAAGAATTCGTCTCATAGGGTCACATGCCAGTATTTGTCTAGGGATAATAGCAAATAGTTATTGTCCTATCATTGAGTAGGAAATTTCTATGGTCAACAATTTAGTTCTTGATCCACAAGGGAGAGCCATTAAAATGGGGCCAGAACTCACATTTCTTCCCAAGTTCAACACCTTTAAAAATCCTCTTGTTCCTTCCGAACTTTGTGTACCACAAAATAGCGAAGGAAGAGACTAGCCATGTTACAACACTTCAGGTTCTAAAACCTATGTACATGTTCTTAGTGACCAAGATTCTATGCTCGTATTTACTACCAAAATCCTGTGCCACATTGCTTTAGGTTCTTAAGGGGCACCCTCACAACTCATGAGCCAGAGAGGACATAATTCTTGTGGGACAAATTTTCTACGCCCAACCTGCCATTCTTGCACATTTTCTGGAAACGACCTCCCAATATACCAAATGAGAACCACCCGTTTCGTCTACTCTTTTCGAAAAAGAAAAGCCTCTCATAATATTCTCCAACTTATTGCAAACTGATGATGGAATCCTAAAGAAAGATTAGATCAAAGAGAGTCGAAGAAGGTTTCTTCCAAGCAAATAAACATTTTTTGAATTCAAGGGCATAACTATACCACCAGGAAAACAGATCCCGGTCAATTAAGGTTGCGATTTATAGTATTTCTCTTCCTCTGCCGTCTTTTGCTTCTACATTATAGGCTTCAATTCTACGAGTCATCCTTATCGGCGGTGGTTCGAACAACTTACCAAATATTGGCTTCCTGCTATAGTTTTTTTGTTTAGATTGCAGTAGATGTTTGTGGAAAGCCAGAGAGCTTTTAAAAGTTCTATTTTTTACAGGCATTTAGTACTGCTGACATTGGGATGGAAAGTCCAGAAATGAACAGCTTCCAGGATGGTTAGTTTGAAATAAATTTGCTGAAAATGAGATGCTTTTGTTATTAGCATGTGGGAATTTGTGAGATA ATGGAAGAGAAATCTCTACGAGGAAACCAAAGGGAGAAGGACCGAGAGAGGGCTCAGGCTCGCACCGGCGGCAAGGGTAAAACCAAGGACGATGGTTTGACCCCCGAGCAGCGCCGCGAAAGAGATGCTAAGGCGCTACAAGAAAAGGCAGCAAAGAAGGCGGCTCAGGCGGCATCGGAAGGTAATTCATCCGGAGGTAAAAGTAGCGCTAAAAAGTAG MEEKSLRGNQREKDRERAQARTGGKGKTKDDGLTPEQRRERDAKALQEKAAKKAAQAASEGNSSGGKSSAKK
BLAST of CmaCh17G000970 vs. TrEMBL
Match: A0A0A0LHU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G138790 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 3.3e-18 Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 1
BLAST of CmaCh17G000970 vs. TrEMBL
Match: V4MXM1_EUTSA (Uncharacterized protein (Fragment) OS=Eutrema salsugineum GN=EUTSA_v10002785mg PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 4.0e-16 Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1
BLAST of CmaCh17G000970 vs. TrEMBL
Match: D7L486_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_898961 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 1.5e-15 Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 1
BLAST of CmaCh17G000970 vs. TrEMBL
Match: A0A0D2QML7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G233500 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 1.5e-15 Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1
BLAST of CmaCh17G000970 vs. TrEMBL
Match: A0A0D3AAZ5_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 89.4 bits (220), Expect = 2.0e-15 Identity = 52/60 (86.67%), Postives = 54/60 (90.00%), Query Frame = 1
BLAST of CmaCh17G000970 vs. TAIR10
Match: AT3G24100.1 (AT3G24100.1 Uncharacterised protein family SERF) HSP 1 Score: 85.9 bits (211), Expect = 1.1e-17 Identity = 50/60 (83.33%), Postives = 54/60 (90.00%), Query Frame = 1
BLAST of CmaCh17G000970 vs. TAIR10
Match: AT4G13615.1 (AT4G13615.1 Uncharacterised protein family SERF) HSP 1 Score: 81.6 bits (200), Expect = 2.1e-16 Identity = 52/68 (76.47%), Postives = 57/68 (83.82%), Query Frame = 1
BLAST of CmaCh17G000970 vs. NCBI nr
Match: gi|659114814|ref|XP_008457241.1| (PREDICTED: putative SERF-like protein [Cucumis melo]) HSP 1 Score: 104.4 bits (259), Expect = 8.6e-20 Identity = 62/66 (93.94%), Postives = 63/66 (95.45%), Query Frame = 1
BLAST of CmaCh17G000970 vs. NCBI nr
Match: gi|449442381|ref|XP_004138960.1| (PREDICTED: small EDRK-rich factor 2 [Cucumis sativus]) HSP 1 Score: 98.6 bits (244), Expect = 4.7e-18 Identity = 59/66 (89.39%), Postives = 59/66 (89.39%), Query Frame = 1
BLAST of CmaCh17G000970 vs. NCBI nr
Match: gi|1009140045|ref|XP_015887438.1| (PREDICTED: small EDRK-rich factor 2 [Ziziphus jujuba]) HSP 1 Score: 93.2 bits (230), Expect = 2.0e-16 Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1
BLAST of CmaCh17G000970 vs. NCBI nr
Match: gi|567158676|ref|XP_006418800.1| (hypothetical protein EUTSA_v10002785mg, partial [Eutrema salsugineum]) HSP 1 Score: 91.7 bits (226), Expect = 5.8e-16 Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 1
BLAST of CmaCh17G000970 vs. NCBI nr
Match: gi|763741006|gb|KJB08505.1| (hypothetical protein B456_001G233500 [Gossypium raimondii]) HSP 1 Score: 89.7 bits (221), Expect = 2.2e-15 Identity = 55/67 (82.09%), Postives = 61/67 (91.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |