CmaCh12G006720 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G006720
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTransducin/WD-like repeat-protein
LocationCma_Chr12 : 3629310 .. 3634594 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGTCGCTTCCGCCATGCAAGGTGGATCATCAGGCATTGGCTACGGGCTGAAATACCAGGTCAATGTTGTTCAATTTCTGATGACAAATGTATTCATGGTATTGGAACTCCATAGATCTTCTTCACTATAAACCCTAATTCCCATTTTCTAAATTGTTTTCTTCTCCAGGCTCGAAGCATCGCTGATGTCAAAGCAGATACAGATCACACCAGCTTCATCACCGGTACTCTCAGTCTCAAAGACGTAAATGAGGTTACTCTCAGTCTTACGTCGATTAATTTCATTGCATGATTGTATTGTTTGTTTTTTGCATGGATCTGATGCATTTTGAAGTCTATTAGGTGCATTTGATTCGTCTCTCGTCGAGTGGATCCGAGCTCATATGTGAGGGTTTGTTTTCTCACCCCAATGAGATCTGGGACCTCGCATCTTGCCCCTTCGACCAACGCATTTTCTCTACCGTCTTCTCCACTGGTAATTAATTGATTGCACAAAACACAATTTTCTGTTGTGCATTCTTCTGATGCGTTGCTTTTTTATACCGCCATTTTACTAATTTCCATAATGTTGACTCATAAATTCACAAAGAATACAGAGCTAAAGAGAATGATCACAAAGGATGATATTTTTCACTGAGAATGATCAAAAGTACACTAGCCTTCATATAGGCATACTGTGAATACAAATGAATAAATGATAAACAGTTCAATCAACTGGCTTAGTAAACACATCAGCAATCTTAGATAGCACACCAACAGCAACAATACTACGACAGAGACGAACAACACTACAATAGAGACGAACTTCAAAAAGAAAAGTTGCCACAAAAAGCAGATAACACCGAACCACTTATCATAGGAGTTGAAATACCTTTAGCCTGATGCATATTAGTCTTAAACAAAAGATCGAAAATATATTTTTGTCTAAGATAGAAACAAATCCAAATTATTATACAGGAAGACAGACTTATGAGATGTTTCTATTCTTTGATAAATTCTGCATTGGCTTATGAGATGTTTATTACAGGAAGACAGACTCGATTGCGTGCTCTGGGTAGATTCGTAATGTGGATTACAACCCCAAGAGGAAACATTTACTTGTAAGGATTCTTTTTCACTGCAGTATCAAATTTGAAATCTCTTCTATTTACTAGTGAATGCATATAGAGAAGGATTTTGTCAAAATATTATACACACTGCCCTTTTGTTCCTTTTTTTTAAGAAAAAAAAAACGTCTCTCAAGTTGGTGTTTGCCACTATATATATTGGATTTTTCTCCTCCATCTTGGCATTAACAAAATGTCCCCTGTTTTAAGGTAACTGCTGTGGAAGAAACTGGAATATCTCTCTGGGACCTTAGGAAGCCAAAAGTCCCAATTCAACAGCTTCCTGGACAAACCCACTGGTAATTTTTATAAGATTCCCCTGTTTTCCCTGGAATGTGTTGAACAGTAAAATCTGTTCTGTGCTCATGTTAAATGTTTTAACTGTGATCCTTTGTACTTAATATTTCTGCAGGATGTTGGTTTTCACAGAATTTCGGTGAGAGGAAATTGGGGAAATGGTTTGTTGCCCCTGTGTCTAGGATCCATCGCCGGTCCTTGTGTTGCTCGTCCCGCTCGCTGATCTGAGCGAACACTCGCTCCTCCTCCAGTTGAATTGGCTCCCTAGCTGGTGCCACCTTTGCTACGCCCAGCTGGAGCTCTTTCTCGAGTTCAACATCGTTGTTGATTACCTCCATTTCCGTGGATTTGGAATCGAGAGTGGGGACACCATGCACTTACCATGAAGAGAGCTGGCTGGCTCGTCTCCTCGGATTGAGCCACATGGGCCTTTTCGGTCATCTCCTTGTTCCTAAGCTTGCTCCAGCAATTCCTGCTTAGGTGTCCTCTATTCCCACAGTTCGAGCAGATTGGCCTGCCATTGGTCGACTCCTTCTTTTGATTCCCATCTTTCCCGCGGCATGCGCCCGTGGGAGATCCATGGCTTCTTACCGTCTTTGCGGCTGGAGGAGGACCCGTTGCTCTGGCCGGTGTTGTCACGGAGCTTTAGACGTGCAAGCCATTCCTCCTCTGTGAGGAGTAGACGACCCCCCTTGTCGACAGCTGAAATGGTATTTTTCTTCCGCTGCTCGACGTTACGCAGTCTTCCAGTCACCTCTTCTACCGTTAGGTCGTTCACGTCAAGCAATGTCTCGATTGAAATCGCAACTTGCTCGAGGTGATCAGGGACAACCTGCAGCATCTTCTTCACGATTTCTGTCTCGCTGTACACCGACCCGGCGGGATTTGATTCCCTCCCAGGCCGAGGCCGATTGCGCGGTGCGCGCTTGGTGGAGAGAGATGCCACCATCTCTGGGGGCACAGATCGTAATATGGCGGCAAACTGCCGTCGTTGTCTCCCTGATCACCCGCTCAACGATAACTTGACGCCCTCTTCGTGGCGGCGGTGATGGAGATGTCAGCACACGACGACGGCGTGGAGGAGTGAGTGAGTGAGCCTACCCCCAAGATGGGCCCCACGATGTGTGTGTTTTTACACTTTGCATTTTCTTCTACTCGAACCTGAGACCTTTGTGATGTTAGATCAAAGCTCTAACCACTTGAGCTATTCAACTTGTTTGTTGATAGGTTGGCTCTTCTGCAATGATATACACCGATCTTCAACTTGGCTCTGATACCACTTGTTGGTTTTCACATAATTTCGGTGAGAGGAAATTGGGAAAATGCGTAACAAAAAGGAGAGAGAAAAAATAACTCTGAATTTGACTGCGTTCAGGTTATTTTATTTTCTGAACAATTCTCCTATTTAAAGTAAAAAGGATTCTAAAATTGGCTGGAGAGTGGCCAACTAAATCTGTGCCACTCCCTCCTGAAACTCTGGTGATCAACAATTCTTCTATTCAAAGTAAAAAGGATTCTAAAATTGGCCGGAGAGTGGCCAACTAAATCTGTGCCACTCTCTCCTAAAACTCTGGTGATCCATTCGACGTGATTTGTGAAATGGTGATCCATTCGACGTGTTTTGTGAAATGGTCAAACTCACGATTTTCAGAAAATCGTGTGAATAAGAAAAACGGTAAAACTCAGGTTTTATCTAACACAGGACTTGTGCTGCTCGTTCTAATCCTGAACATGATGGGCTAATCTTGGTTTGCTCTCCTTCTCTCCTCTCCATTTCTACATAGAGTCACTTCTTCGAACCTATTTTACTGTTCAGTTCGTGTTTGTTAAATTGCACTTTATGCTTCTCTTCTACATGTGTTTCTAATTATTATTAACTAAATCCCTGGAAGTTGATGTAACGGCCCAGACCCACCACTACCAAATATTATTCTCTTTGGGCTTTCTTTTTCGGACTTCCTTTCAAGGTTTTTGGGTTTTCCCTTATGGGCTTCCCTATTACGTGTCTGCTAGGGAAAAGTTTCCACACTCTTATAAAGGTGTTTCGTTCTCTTCCCCAACTAATGTGATATGATGGCTGGTGAAATCATTTTTATTTATAGTACAAGGCCTTCCAATTTTTCAATGCATCTTTGAGCCAATGATACTTGTATATAATTGCAGAGTGCTGGTACTCATTCAGCTGTTAGCTTATGGTTGCCATCTGTGTGTAATGGTGAACTGAAATCGGAAAGGTCATGTTCTTGTTTGTGATGTTTCTTTTTCTTTTTCTCTTTGACATTTATGCTGATACTTGTTTATATTAATTTATGAGCAGGTCGGTTGATTCACCACCACAGCAAGGTGATCCATTATTACATTCTTACAGTGACTACGAAGACAGCGTTTATGGTAACACACCTGTAGCCTTTGTCATTTTAGTATATATATATATATATCCAGTGGATCAAACTTATCGGTTGGCTTTACTTTCAAACTAAAAGGCCTTGCTTGGAGCTTTCGTGAGCCTTGGATCTTTGCATCATTGTCCTATGATGGGAGGGTAAGTAGGCTTCAACTGTTCCCAGATTGACATTGGTTTCCAAGAAATTGTAACAAATTCTGGTGGAGGTTTTAATCATGTTTTTTTTCTTCCCTTTTTTATGGTCGTTCATTCATCTGTAAATCAACCCAGTTTACAGTTCTTCAGAATGACATGTTCATTTTTTTTTTCTTGCGAACAGGTCGTTGTAGAATCAGTGAAGCCTTTTCTCTCGAGATAATGGATTTCATCTTGGATTTTCTTTCCCAATATTGATTGCTTCCTCGGTTTGATTTAGAGTTTCTCATTACGGCTACTGGACTTGCGTTAACCCTCCCATCAAAGCTTACATCTGTTCCACAGCAGGAGTGACCATTGTTTCTGGATTTAGTTCAAACAAGTCTTTATGACGTTATTTACGAGATCACTGGACGAGCACGACCACAGTAACGGAGAAAGTATACACTACCCAGGGAGTAATTTTATTGTTCTGAAGATGCCATAGCTGTTATGAACAAGCAAGTACCTTTCTTCTACCGTTTGTTGTTTTGTTGTGTTGAACTTACTCAACTAGTGCATACAGCTTAAACTTTCCGCCAGAAAAGAAAATGATATTATTATAGATTTTGATTTCCTCTTGGTTTGGATGCCTATGCTGTTTGGTACTTGGGACATGGGCACAGCTGGGAAACAACGAACAGCAACGACCAACCATTTATCTCCAAAGTTCTGAGATGTTTATAGCATTGCCCATGTAATGACTAAAAGCCCACCGCTAATATCAGTAGATATTGTCTTTTTTGAGCTTTTCTTTTCAAGTTTTTCCTCAAGATTTTTAAAACGTCTGCTAGGGAGAGGTTTTTACGCCTTTATACAAAAATGTTTCTTTCTCTTCTCCTATTGATGTGAGATTTCACAATCCACATCACCTGTATCTGTCTCTGATACTCATTTGTAACCGTCCAAGCCCACTACCATCTCTATCAAATAAATAACTTGGAAGGAAAAAGAAAAAAGAAAGTTAGGCAATGATTTTCTCCGATGATTACCATCTCGTGTGAATTGTTTGTGGATGAATATAATTGAAATTTTGATGCTTATCCGAATGTACTTGGATTGAAAAACAACAGGAATGCCATGTCAGGGCTGCCCCTGTGAAACCTCTGTTTCACCGTTTAGTAGCAGAAGTCTTCAGACCAAGACCAAGTTATTCTATGGTAGGTGTTTGTTTGAATTGAAAATGTGGAACTTTTGCTGACCAAGTGTCCTTTTGCCACGTTGGATATGATTTTCCATTTTATCCACAAATAATGAGTTAGTTGCCTTTGCCAATCAGAATCTTGCCATGTCACCCTAG

mRNA sequence

ATGCCGGTCGCTTCCGCCATGCAAGGTGGATCATCAGGCATTGGCTACGGGCTGAAATACCAGGCTCGAAGCATCGCTGATGTCAAAGCAGATACAGATCACACCAGCTTCATCACCGGTACTCTCAGTCTCAAAGACGTAAATGAGGTGCATTTGATTCGTCTCTCGTCGAGTGGATCCGAGCTCATATGTGAGGGTTTGTTTTCTCACCCCAATGAGATCTGGGACCTCGCATCTTGCCCCTTCGACCAACGCATTTTCTCTACCGTCTTCTCCACTGCACACCAACAGCAACAATACTACGACAGAGACGAACAACACTACAATAGAGACGAACTTCAAAAAGAAAAGTTGCCACAAAAAGCAGATAACACCGAACCACTTATCATAGGAAAACAAATCCAAATTATTATACAGGAAGACAGACTTATGAGATGTTTCTATTCTTTGATAAATTCTGCATTGGCTTATGAGATGTTTATTACAGGAAGACAGACTCGATTGCGTGCTCTGGGTAGATTCGAAGCCAAAAGTCCCAATTCAACAGCTTCCTGGACAAACCCACTGAGTGCTGGTACTCATTCAGCTGTTAGCTTATGGTTGCCATCTGTGTGTAATGGTGAACTGAAATCGGAAAGGTCGGTTGATTCACCACCACAGCAAGGTGATCCATTATTACATTCTTACAGTGACTACGAAGACAGCGTTTATGGCCTTGCTTGGAGCTTTCGTGAGCCTTGGATCTTTGCATCATTGTCCTATGATGGGAGGAATCTTGCCATGTCACCCTAG

Coding sequence (CDS)

ATGCCGGTCGCTTCCGCCATGCAAGGTGGATCATCAGGCATTGGCTACGGGCTGAAATACCAGGCTCGAAGCATCGCTGATGTCAAAGCAGATACAGATCACACCAGCTTCATCACCGGTACTCTCAGTCTCAAAGACGTAAATGAGGTGCATTTGATTCGTCTCTCGTCGAGTGGATCCGAGCTCATATGTGAGGGTTTGTTTTCTCACCCCAATGAGATCTGGGACCTCGCATCTTGCCCCTTCGACCAACGCATTTTCTCTACCGTCTTCTCCACTGCACACCAACAGCAACAATACTACGACAGAGACGAACAACACTACAATAGAGACGAACTTCAAAAAGAAAAGTTGCCACAAAAAGCAGATAACACCGAACCACTTATCATAGGAAAACAAATCCAAATTATTATACAGGAAGACAGACTTATGAGATGTTTCTATTCTTTGATAAATTCTGCATTGGCTTATGAGATGTTTATTACAGGAAGACAGACTCGATTGCGTGCTCTGGGTAGATTCGAAGCCAAAAGTCCCAATTCAACAGCTTCCTGGACAAACCCACTGAGTGCTGGTACTCATTCAGCTGTTAGCTTATGGTTGCCATCTGTGTGTAATGGTGAACTGAAATCGGAAAGGTCGGTTGATTCACCACCACAGCAAGGTGATCCATTATTACATTCTTACAGTGACTACGAAGACAGCGTTTATGGCCTTGCTTGGAGCTTTCGTGAGCCTTGGATCTTTGCATCATTGTCCTATGATGGGAGGAATCTTGCCATGTCACCCTAG

Protein sequence

MPVASAMQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTAHQQQQYYDRDEQHYNRDELQKEKLPQKADNTEPLIIGKQIQIIIQEDRLMRCFYSLINSALAYEMFITGRQTRLRALGRFEAKSPNSTASWTNPLSAGTHSAVSLWLPSVCNGELKSERSVDSPPQQGDPLLHSYSDYEDSVYGLAWSFREPWIFASLSYDGRNLAMSP
Homology
[Close]
BLAST of CmaCh12G006720 vs. Swiss-Prot
Match: DWA2_ARATH (WD repeat-containing protein DWA2 OS=Arabidopsis thaliana GN=DWA2 PE=1 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 8.0e-39
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1 

Query: 7  MQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEG 66
          MQGGSSGIGYGLKYQAR I+DVKAD DHTSF+TGTLSLK+ NEVHL+RLSS GSEL+CEG
Sbjct: 1  MQGGSSGIGYGLKYQARCISDVKADRDHTSFLTGTLSLKEENEVHLLRLSSGGSELLCEG 60

Query: 67 LFSHPNEIWDLASCPFDQRIFSTVFST 94
          LFSHPNEIWDLAS PFDQRIFSTVFST
Sbjct: 61 LFSHPNEIWDLASSPFDQRIFSTVFST 87

[Close]
BLAST of CmaCh12G006720 vs. Swiss-Prot
Match: TSSC1_DICDI (Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.7e-10
Identity = 28/79 (35.44%), Postives = 49/79 (62.03%), Query Frame = 1 

Query: 16 YGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEGLFSHPNEIW 75
          YGL  + R+++ + A+ D   F+ GT +L++ NE+ L+  +  G  + C  +F HP EI 
Sbjct: 14 YGLSQKTRALSHITAEADVNRFLVGTTALREENEIALLE-AKEGEGVRCLSIFPHPKEIH 73

Query: 76 DLASCPFDQRIFSTVFSTA 95
           + SCPFD  +F +V++T+
Sbjct: 74 SITSCPFDSSLFFSVYNTS 91

[Close]
BLAST of CmaCh12G006720 vs. Swiss-Prot
Match: TSSC1_XENTR (Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-08
Identity = 26/77 (33.77%), Postives = 46/77 (59.74%), Query Frame = 1 

Query: 16 YGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEGLFSHPNEIW 75
          YGL++QAR++A   A+TD   F+ GT SL+  N++H+I      + +    L  H  EIW
Sbjct: 9  YGLEFQARALAAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNILLHHAGEIW 68

Query: 76 DLASCPFDQRIFSTVFS 93
           +++ P D+ + +T ++
Sbjct: 69 QISASPADRNVLATCYN 85

[Close]
BLAST of CmaCh12G006720 vs. Swiss-Prot
Match: TSSC1_XENLA (Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-07
Identity = 25/77 (32.47%), Postives = 44/77 (57.14%), Query Frame = 1 

Query: 16 YGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEGLFSHPNEIW 75
          YGL++QAR++    A+TD   F+ GT SL+  N++H+I      + +    L  H  EIW
Sbjct: 9  YGLEFQARALTAQTAETDAIRFLVGTQSLRYDNQIHVIDFDDENNIINKNVLLHHAGEIW 68

Query: 76 DLASCPFDQRIFSTVFS 93
           + + P D+ + +T ++
Sbjct: 69 QIGASPADRNVLATCYN 85

[Close]
BLAST of CmaCh12G006720 vs. Swiss-Prot
Match: TSSC1_GEKJA (Protein TSSC1 OS=Gekko japonicus GN=TSSC1 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.8e-07
Identity = 26/77 (33.77%), Postives = 44/77 (57.14%), Query Frame = 1 

Query: 16 YGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEGLFSHPNEIW 75
          YGL++QAR++    A+TD   F+ GT SLK  N++H+I      + +    L     EIW
Sbjct: 9  YGLEFQARALTPQTAETDAIRFLVGTQSLKYDNQIHIIDFDDENNIINKNVLLHQVGEIW 68

Query: 76 DLASCPFDQRIFSTVFS 93
           +++ P D+ + +T +S
Sbjct: 69 HISASPADKGVLATCYS 85

[Close]
BLAST of CmaCh12G006720 vs. TrEMBL
Match: A0A0A0KDH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358120 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 8.3e-43
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1 

Query: 1  MPVASAMQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGS 60
          +PVASAMQGGSSGIGYGLKYQAR IADVKADTDHTSFITGTLSLKD NEVHLIRLSSSGS
Sbjct: 2  VPVASAMQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKDENEVHLIRLSSSGS 61

Query: 61 ELICEGLFSHPNEIWDLASCPFDQRIFSTVFST 94
          ELICEGLFSHPNEIWDLASCPF+QRIFSTVFST
Sbjct: 62 ELICEGLFSHPNEIWDLASCPFEQRIFSTVFST 94

[Close]
BLAST of CmaCh12G006720 vs. TrEMBL
Match: A0A061FDW6_THECC (Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_034364 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.5e-39
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 2   PVASAMQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSE 61
           P  +AMQGGSSGIGYGLKYQAR I+DVKADTDHTSFITGTLSL++ NEVHLIRLSS G+E
Sbjct: 58  PGGAAMQGGSSGIGYGLKYQARCISDVKADTDHTSFITGTLSLREENEVHLIRLSSGGTE 117

Query: 62  LICEGLFSHPNEIWDLASCPFDQRIFSTVFST 94
           LICEGLFSHPNEIWDLASCPFDQRIFSTVFST
Sbjct: 118 LICEGLFSHPNEIWDLASCPFDQRIFSTVFST 149

[Close]
BLAST of CmaCh12G006720 vs. TrEMBL
Match: A0A059BW17_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03549 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.3e-39
Identity = 78/92 (84.78%), Postives = 88/92 (95.65%), Query Frame = 1 

Query: 2   PVASAMQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSE 61
           PV ++MQGGSSG+GYGLKYQAR I+DVKADTDHTSF+TGTLSLK+ NEVHL+RLSS G+E
Sbjct: 55  PVTASMQGGSSGVGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE 114

Query: 62  LICEGLFSHPNEIWDLASCPFDQRIFSTVFST 94
           LICEGLFSHP+EIWDL+SCPFDQRIFSTVFST
Sbjct: 115 LICEGLFSHPSEIWDLSSCPFDQRIFSTVFST 146

[Close]
BLAST of CmaCh12G006720 vs. TrEMBL
Match: A0A165Y078_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013911 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.3e-39
Identity = 80/87 (91.95%), Postives = 85/87 (97.70%), Query Frame = 1 

Query: 7  MQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEG 66
          MQGGS+GIGYGLKYQAR IADVKADTDHTSFITGTLSLK+ NEVHLIRLSSSG+EL+CEG
Sbjct: 1  MQGGSTGIGYGLKYQARCIADVKADTDHTSFITGTLSLKEENEVHLIRLSSSGTELVCEG 60

Query: 67 LFSHPNEIWDLASCPFDQRIFSTVFST 94
          LFSHPNEIWDLASCPFDQRIFSTVFS+
Sbjct: 61 LFSHPNEIWDLASCPFDQRIFSTVFSS 87

[Close]
BLAST of CmaCh12G006720 vs. TrEMBL
Match: A0A059BWG4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03549 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.3e-39
Identity = 78/92 (84.78%), Postives = 88/92 (95.65%), Query Frame = 1 

Query: 2   PVASAMQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSE 61
           PV ++MQGGSSG+GYGLKYQAR I+DVKADTDHTSF+TGTLSLK+ NEVHL+RLSS G+E
Sbjct: 55  PVTASMQGGSSGVGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE 114

Query: 62  LICEGLFSHPNEIWDLASCPFDQRIFSTVFST 94
           LICEGLFSHP+EIWDL+SCPFDQRIFSTVFST
Sbjct: 115 LICEGLFSHPSEIWDLSSCPFDQRIFSTVFST 146

[Close]
BLAST of CmaCh12G006720 vs. TAIR10
Match: AT1G20540.1 (AT1G20540.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 165.6 bits (418), Expect = 4.1e-41
Identity = 78/87 (89.66%), Postives = 84/87 (96.55%), Query Frame = 1 

Query: 7  MQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEG 66
          MQGGSSGIGYGLKYQ+R I+DVKADTD+TSF+TGTLSLK+ NEVHL+RLSS GSELICEG
Sbjct: 1  MQGGSSGIGYGLKYQSRCISDVKADTDYTSFLTGTLSLKEENEVHLLRLSSGGSELICEG 60

Query: 67 LFSHPNEIWDLASCPFDQRIFSTVFST 94
          LFSHPNEIWDLASCPFDQRIFSTVFST
Sbjct: 61 LFSHPNEIWDLASCPFDQRIFSTVFST 87

[Close]
BLAST of CmaCh12G006720 vs. TAIR10
Match: AT1G76260.1 (AT1G76260.1 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2)

HSP 1 Score: 162.2 bits (409), Expect = 4.5e-40
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = 1 

Query: 7  MQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEG 66
          MQGGSSGIGYGLKYQAR I+DVKAD DHTSF+TGTLSLK+ NEVHL+RLSS GSEL+CEG
Sbjct: 1  MQGGSSGIGYGLKYQARCISDVKADRDHTSFLTGTLSLKEENEVHLLRLSSGGSELLCEG 60

Query: 67 LFSHPNEIWDLASCPFDQRIFSTVFST 94
          LFSHPNEIWDLAS PFDQRIFSTVFST
Sbjct: 61 LFSHPNEIWDLASSPFDQRIFSTVFST 87

[Close]
BLAST of CmaCh12G006720 vs. NCBI nr
Match: gi|449452963|ref|XP_004144228.1| (PREDICTED: WD repeat-containing protein DWA2-like [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 89/93 (95.70%), Postives = 91/93 (97.85%), Query Frame = 1 

Query: 1  MPVASAMQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGS 60
          +PVASAMQGGSSGIGYGLKYQAR IADVKADTDHTSFITGTLSLKD NEVHLIRLSSSGS
Sbjct: 2  VPVASAMQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKDENEVHLIRLSSSGS 61

Query: 61 ELICEGLFSHPNEIWDLASCPFDQRIFSTVFST 94
          ELICEGLFSHPNEIWDLASCPF+QRIFSTVFST
Sbjct: 62 ELICEGLFSHPNEIWDLASCPFEQRIFSTVFST 94

[Close]
BLAST of CmaCh12G006720 vs. NCBI nr
Match: gi|659129829|ref|XP_008464867.1| (PREDICTED: WD repeat-containing protein DWA2-like isoform X1 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 9.4e-40
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1 

Query: 7  MQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEG 66
          MQGGSSGIGYGLKYQAR IADVKADTDHTSFITGTLSLKD NEVHLIRLSSSGSELICEG
Sbjct: 1  MQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKDENEVHLIRLSSSGSELICEG 60

Query: 67 LFSHPNEIWDLASCPFDQRIFSTVFS 93
          LFSHPNEIWDLASCPFDQRIFSTVFS
Sbjct: 61 LFSHPNEIWDLASCPFDQRIFSTVFS 86

[Close]
BLAST of CmaCh12G006720 vs. NCBI nr
Match: gi|659129831|ref|XP_008464868.1| (PREDICTED: WD repeat-containing protein DWA2-like isoform X2 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 9.4e-40
Identity = 84/86 (97.67%), Postives = 84/86 (97.67%), Query Frame = 1 

Query: 7  MQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSELICEG 66
          MQGGSSGIGYGLKYQAR IADVKADTDHTSFITGTLSLKD NEVHLIRLSSSGSELICEG
Sbjct: 1  MQGGSSGIGYGLKYQARCIADVKADTDHTSFITGTLSLKDENEVHLIRLSSSGSELICEG 60

Query: 67 LFSHPNEIWDLASCPFDQRIFSTVFS 93
          LFSHPNEIWDLASCPFDQRIFSTVFS
Sbjct: 61 LFSHPNEIWDLASCPFDQRIFSTVFS 86

[Close]
BLAST of CmaCh12G006720 vs. NCBI nr
Match: gi|590595127|ref|XP_007017996.1| (Transducin/WD40 repeat-like superfamily protein [Theobroma cacao])

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 82/92 (89.13%), Postives = 87/92 (94.57%), Query Frame = 1 

Query: 2   PVASAMQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSE 61
           P  +AMQGGSSGIGYGLKYQAR I+DVKADTDHTSFITGTLSL++ NEVHLIRLSS G+E
Sbjct: 58  PGGAAMQGGSSGIGYGLKYQARCISDVKADTDHTSFITGTLSLREENEVHLIRLSSGGTE 117

Query: 62  LICEGLFSHPNEIWDLASCPFDQRIFSTVFST 94
           LICEGLFSHPNEIWDLASCPFDQRIFSTVFST
Sbjct: 118 LICEGLFSHPNEIWDLASCPFDQRIFSTVFST 149

[Close]
BLAST of CmaCh12G006720 vs. NCBI nr
Match: gi|629104838|gb|KCW70307.1| (hypothetical protein EUGRSUZ_F03549 [Eucalyptus grandis])

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 78/92 (84.78%), Postives = 88/92 (95.65%), Query Frame = 1 

Query: 2   PVASAMQGGSSGIGYGLKYQARSIADVKADTDHTSFITGTLSLKDVNEVHLIRLSSSGSE 61
           PV ++MQGGSSG+GYGLKYQAR I+DVKADTDHTSF+TGTLSLK+ NEVHL+RLSS G+E
Sbjct: 55  PVTASMQGGSSGVGYGLKYQARCISDVKADTDHTSFLTGTLSLKEENEVHLLRLSSGGTE 114

Query: 62  LICEGLFSHPNEIWDLASCPFDQRIFSTVFST 94
           LICEGLFSHP+EIWDL+SCPFDQRIFSTVFST
Sbjct: 115 LICEGLFSHPSEIWDLSSCPFDQRIFSTVFST 146

The following BLAST results are available for this feature:
BLAST of CmaCh12G006720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DWA2_ARATH8.0e-3988.51WD repeat-containing protein DWA2 OS=Arabidopsis thaliana GN=DWA2 PE=1 SV=1[more]
TSSC1_DICDI2.7e-1035.44Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1[more]
TSSC1_XENTR4.3e-0833.77Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1[more]
TSSC1_XENLA1.2e-0732.47Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1[more]
TSSC1_GEKJA2.8e-0733.77Protein TSSC1 OS=Gekko japonicus GN=TSSC1 PE=2 SV=1[more]
BLAST of CmaCh12G006720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDH1_CUCSA8.3e-4395.70Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358120 PE=4 SV=1[more]
A0A061FDW6_THECC1.5e-3989.13Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_034364... [more]
A0A059BW17_EUCGR7.3e-3984.78Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03549 PE=4 SV=1[more]
A0A165Y078_DAUCA7.3e-3991.95Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013911 PE=4 SV=1[more]
A0A059BWG4_EUCGR7.3e-3984.78Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F03549 PE=4 SV=1[more]
BLAST of CmaCh12G006720 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G20540.14.1e-4189.66 Transducin/WD40 repeat-like superfamily protein[more]
AT1G76260.14.5e-4088.51 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2[more]
BLAST of CmaCh12G006720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449452963|ref|XP_004144228.1|1.2e-4295.70PREDICTED: WD repeat-containing protein DWA2-like [Cucumis sativus][more]
gi|659129829|ref|XP_008464867.1|9.4e-4097.67PREDICTED: WD repeat-containing protein DWA2-like isoform X1 [Cucumis melo][more]
gi|659129831|ref|XP_008464868.1|9.4e-4097.67PREDICTED: WD repeat-containing protein DWA2-like isoform X2 [Cucumis melo][more]
gi|590595127|ref|XP_007017996.1|2.1e-3989.13Transducin/WD40 repeat-like superfamily protein [Theobroma cacao][more]
gi|629104838|gb|KCW70307.1|1.0e-3884.78hypothetical protein EUGRSUZ_F03549 [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G006720.1CmaCh12G006720.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14205WD-REPEAT PROTEINcoord: 8..93
score: 4.4
NoneNo IPR availablePANTHERPTHR14205:SF15PROTEIN TSSC1coord: 8..93
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G006720Cucsa.077630Cucumber (Gy14) v1cgycmaB0129
CmaCh12G006720Cla021944Watermelon (97103) v1cmawmB153
CmaCh12G006720Csa6G358120Cucumber (Chinese Long) v2cmacuB195
CmaCh12G006720MELO3C026544Melon (DHL92) v3.5.1cmameB164
CmaCh12G006720ClCG08G009490Watermelon (Charleston Gray)cmawcgB175
CmaCh12G006720CSPI06G18750Wild cucumber (PI 183967)cmacpiB198
CmaCh12G006720CmoCh05G010070Cucurbita moschata (Rifu)cmacmoB201
CmaCh12G006720CmoCh12G006080Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G006720Lsi08G007990Bottle gourd (USVL1VR-Ls)cmalsiB190
CmaCh12G006720Cp4.1LG11g08030Cucurbita pepo (Zucchini)cmacpeB181
CmaCh12G006720MELO3C026544.2Melon (DHL92) v3.6.1cmamedB179
CmaCh12G006720CsaV3_6G031630Cucumber (Chinese Long) v3cmacucB0224
CmaCh12G006720Cla97C08G152310Watermelon (97103) v2cmawmbB200
CmaCh12G006720Bhi04G001232Wax gourdcmawgoB0205
CmaCh12G006720CsGy6G018200Cucumber (Gy14) v2cgybcmaB718
CmaCh12G006720Carg21869Silver-seed gourdcarcmaB0289
CmaCh12G006720Carg17652Silver-seed gourdcarcmaB0172
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh12G006720CmaCh05G009890Cucurbita maxima (Rimu)cmacmaB201
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G006720Cucurbita maxima (Rimu)cmacmaB181
CmaCh12G006720Wild cucumber (PI 183967)cmacpiB188
CmaCh12G006720Melon (DHL92) v3.5.1cmameB183
CmaCh12G006720Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G006720Cucumber (Gy14) v2cgybcmaB480
CmaCh12G006720Melon (DHL92) v3.6.1cmamedB199
CmaCh12G006720Silver-seed gourdcarcmaB0502