CmaCh08G004220 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G004220
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Arginine/serine-rich splicing factor, putative
Location	Cma_Chr08 : 2398590 .. 2404592 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTATATAGTGAGAAAAAGGGTATTGGGGGTGGCTTGGAAAGTTCATTTGAAACAGCTTTTTGTGGGTGTTTGCTATGCATTAGGCGTGGGGATGGTGAATGCATTGAAGAGGTAGTGGTGAGCTGAAATAAGTTAGGAAGGTGAAAAACATGTGAATGGCAGTTGAGTTCTCGTGAACTTGGGAACAAAGGAAATCTAGGAAAATTTGGTATCTCTTTTGCCATAATTTATAATCCATCTTTGACTTGTTCATCATGAGATCTCTGTAACACAGTAGTATTGATTGCTACTTGGCTATGGAAAAAAAAAAATCCCCATCGTGTCATGTATGGTTCTTACGTTCATTAGCTATAGGGAGGTGGTAGCAGTATAACATGTCTCATTGGTTGAAACTGTAGAGCTTAACCATGGAATACATTTGGTTCAAGCCGAATGTGAGGTCTCGCGTTAGTTGGAGAGGGGAACGAAACATTTCTTGCACGAGTGTGGAAACCTCTCCTTAGTAGACGTGTTTTAAAACCGTGAGGCTGACAGTGACACGTAATGGGCTAAAGTAGACAATATAACGGTGGACTTGAACTGTTATAAATGGTATTAGAGGCCAGTTATCAAGCGGTGTGTCAGCAAGAACGATCGTCCCCCAAAAGGGTAGATTGTGAGATCCTACATTGATTGGAGAGGGGAACATAACATTTCTTGTAAGGGTGTGGAAACCTCTCACTAGTAGACACGTTTTAAAACTGTGAAGTTAACGGTGATACATAACAGTAAAAAATAGACCATATTTGCTAGTTGTGGGCTTGAATTGTTATACCCTAAGTTGAAGTTTGAGAGAAGCTCAATTAGCACCCAAGCATAGAGCGACTTGAAGTCTTAAACATTGTGGGGGAAATTTTCCAAGATCATCGATGTATGGACACTAAAAGGATTAAATTTGTATTTAAAACATATGATTAGCTGACTAACACCTTCCATCGAGCGATCGTTATAGTTGTTGTTATTTGTCGTTAGAGTTGGTCGCCAATGGTGGTCACCGTTGATCGCTAACAAAAGTCGGAGTAGAGTCATCGACATGGTCACCCACGTGAAATGTCACAAAAAATCATTTAACTATTTTAAATTGGAAAAATGTTTTTGTAGTTAAACTTAAAAGTTTTTAAAATAAAATTATAGTTTATAAATTTGAAAAATTAAATATCATTTGATTCCACATACATATTTTTATTAGATAATGGAAAATTTTCATTATAATCACACCCTTAAAATTTTATTTTAATTTGATTAAATCAAGCTTTTTAAATTTGTTATGTGTCATAATTATATTATTAAATTTTAACTTAGACCCATTAATTTCATATGCTTATTAAAAATAACAATGAAAAAATATAGAACACGAAACTAATTTATTAAATAAAAATGTGAATCAATCGATTAAATTTAAAATTTTAAGGGCGTAACTGCAAACTTATCAAAATATGAGATAATTGATCAAATTAGAAAATTCAGAGTCTCATTGTGTAATATTTCTTTAAGAAGGGACCAAAGTATAATATTTATGAGTTATAAGGACTAAAATATAATAATTAAAAATTTAGAGGTGTAAAATTGAATTAATTACAAATTTCAAGGGGGGAAATGAATTTTATTTTAAAATATTGCTACGCATTATGTAACTGGTAGTAAACATATCCAGGACATTACTGTGCAACGCGATACAGATTATTATAACCGTACCATATATTTACTCGTGGCTCCATCTTTTGATTTCAAAACCCTAACATTTTACAGTTCTCTCGCCCCTGCGCTTCGTCGTCCACAGATCGAATTCGAGGTAACGTTCAATCAAACGCTGAATCTTCGTTTTTAATTTCAATATAGAGTGCTCTTCGAATTTGATCTTATTTGTTTGTTAAGGCAAGTTTAATCTTAATCGAGGCTTAGACTTCGTAGTTTCTGATTTATTTTTCTTTGTTTTTTGTGAGGTATAATCGTTAAGGTTAATCGTTTCTTCTTTTTAGGGAAAAATGAGCGGCCGTGCCAGCAGAACAGTGTATGTCGGCAATCTCCCGGGTGATATTCGTGAAAAGGAAGTGGAAGATTTATTTTATAAGGTAATTCTTCGTAATTTTGTATGTGCATGATGATTTGGCACCTACGTTGAGTTTCTTAGGGGACCAACAGTTTTTTCGTGCACGAATCTGTCACGTTGGTGCTGCATGGTATGTCTGGATATTATAAAGCTTTAGTCACAAGGAGTGCGAGCGTAGAATGTTAAACCTTTTGCTTTCGATACTCAGAAGGAGAGGAGTATGAGGATCTTGCAAATGTAGATGTAATTCCCATTTTTGAACTATCGACGCATGTTCTGTGCCTTTTCTTTTTTGAAGGTTCAAGATGATCTGAGACAACGTTATAAAAGTGTTGGAGTTTTATTTGTTGAAAATATTTAATCTAAATCTGTTCTCATTCGACATTTTATGGTAGTATGGTCGCATAGCTCACATTGATCTCAAGGTTCCACCAAGGCCTCCAGGTTATGCATTTGTTGAGGTGAGATTATTGCATATGATATGATATTTTCTCTTCCTATGAGATACTTGTTACTTGTGTTCTCAATATGGATTTAATGATTGTAGTTTGAAGATGCGGAAGATGCTCAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGTCATAGGTTGCGTGTGAGTCACTAACCAAGTCTATTTCAATTGTTATGAGAATTGGTCGTTTTTGTACTTCATTGCTTTACAGTTGTAATTTATGCATTGTTTCTTTCTTTCTGTTTCTAGGTGGAGCTTGCTCATGGTGGTCGTGGTCATTCATCTTCCAGTGATCGTCATAGTAGTTATGGAGGCAGCCGAGGTGGCCGTGGAGTATCTCGGCGCTCTGATTATCGTGGTATATACTCATTTCTTAGGCACCATACAATATTTTGACATTGTAAACATTGGATCTTGTAATATATATATATTTTGTTTATGCAGTATTAGTCACAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAGGTAAGATTATTCTATTTGACATGAAGTGTATCTGCCTAGGCGTTCTATTTTTTCTGATTCACACTGAATATCATATTATTTAATGTTGAAGGATCATATGCGGCGAGCTGGGGATGTTTGTTTCTCCCAAGTGTTCCGTGATGGTAGTGGTGAGATACCTCTGCTGAAGTTGCTTCAAACTCACTATAATGTGTTTTTGAGAACCAAATAACTATTTCTTTCAATGTGTTGCAGGAACCACAGGGATTGTGGATTACACCAACCTTGATGACATGAAGTATGCAGTAAGTAGTTTTTATCTTTGTACTAATATGTTTGAAATATTGAACCTTAATGTTCATCTGCCATCTTGTATTGCTTCTAATGACTTTAAGAGCCCAATCTTTGGTTTGGTTATGTGCTATAATACCTGTTTCCTTGTCACTGCAGATTAAAAAACTTGATGACTCTGAGTTTCGCAATGCATTTTCTCGGGCATATGTTCGTGTATGAATTATACCCTCTCCTATTAATTAATTTTTCATGATTTGTCATATTGTTTCTTACCTGTTTTCATTTTTTTTTTTTGGAAGGTGAGAGAATATGATTCAAAGAAGGATCGCTCCAGGAGTCCTAGTCGTGGGCGGTCATATTCTAGAGAGAGGACTTGTAGTCGCAGTCGCAGTCGTAGCAGAGGCCGAAGTAGGAGCAAGAGCCGCAGTAGGAGCAAGAGCCGCAGTAGGAGGTTGGTTGGTTTGTTATCAGTAAATTAGTTTTAGCTCATTGCTTCCTTCTATTTAATGTTTTATTAACTTTTGAGCAGCAAGTCCCCAAAAGCTAAATCTTCCCAGCGATCACCTGTTAAATCTCGATCAAGGTCTGTTTCCCCTGCTCGCTCTCGGTCAAAGTCACCATCTCTTTCTGGGTATGTATTCTCATTTTGTAAACTACTAGCTTTCATTTTTGTCATTCTTAATTTTATTTTATTCAATTCTATTTTGTTTTCTTTTTAAATAAGATCTAACTGCAGTCTGTTCATTGTTTGTCTATATTTATATGATTTGAGTTGTCACACGGGCAGGGTCTGTTTGTTGCACCTGTCTTTCCTTAGGCAGAATGTTAGACAGGGTGAAATAAACAACGTAAAAGTATTGAAAGTGAACTAATTCTTTTGTATTGCTCAAAAACTGGTCAGAAAGTGGTTGATAGCAACGGATTTGAAATTACCTTACCGGGTGCTATGTGTTTGCATGTGGTATTGTGGTTTGTACAATTCCCTTGTATGGGAAAACCACCCTTTTCTTCCATAGTCTTGGATCATTCTGAGAATGGTGGAGATGAATACTTGACAGACTTCAAATTAGTCTGGGCAATGTGTGGGACCCCCTCTATTGGAATGTTGGGTAAACCTTTCCTTATTGACTCAATTTAGTTATTACTATTTTACATCAGATTTTGCGTTAATTTTAATTACTTGGAATTATTTGTTCAACAACTGGGGTAGCCAAGAAATGAATAGATTTCTTTCATTCATTGTCCTTTTTTGTGTGTGAAAATTACTTGTTTGTTTTTTTAGATATGGAAATATGCGGCATACTGGGGATTGGATATTAGTATCCTGATGGGATTTGATTCATTTGCCTTCAATGCTTTTGGTTGAGAAGGTATGCTGTTTTTTAGATGGGCAGCTTTGAAAACCATCTGGTACCCCCTGTTCTAATGCTTTTAGCAATGCAATGTCCATGGGTGCTAGATTTGGATCAAAGGAGATCATGGATTGCAATAATAGAGCTGGATATCTTGGACTAAGTGCTATTTGGACTTGGAACTCATCATCACTTTCATTTACATTTTCTGCTGCAAGATTTGCAAAGCTATAGGACGCACTATCTGGATTCATTGTGGACTTTTTGAGGCACAGTAGGGAAGAATGCTCCTCGCCCGTCCACTGGTGTCTCTATAATATATTGGTTCCTATAGATTGAAGTTTTCTAATTTTAGGTCTTCACTTTGGAGTCTTAAGTTTTTGAATTGGCGTATAATCTTCATAGTTGAACTGCTAAAATACTATTTTTCTATCTCACGTATATAATGTGGACGAGGCGTCAGGCTCTTGGATCACATTTGGTAAAAGAGGCGTGGATTTTAAATTTTGGTTATTTCTGGACATTTTGCAGATCCCGATCAAGATCCAGATCTCCATTGCCCAATGTAAGTGATACCTATTACAATCTATTATTTTATATTGTGTATTTTTGCTCTGGCCATACAAGTTTATAGTAAACTTGTGTCCGCATATGATCGTCTTATATGGCAGCGTGAGAAACGTACTAGTAAAAGTCCTAACCGGCGTGATGCTAGCAAAAGCCCTAGCAGAAGCAGGAGTAAGAGCAAGAGCCCGTCCCGGTAGAGCTTTTGGTAATTTTATTTTCAACTTCTGCAGTCAAGAATAACAACTTTTACTGCGACACTCCGAACGCCATGGATTGTGCACACATTTTTGTATAACTGTATGTCCTTGAAACATTTTGTGATACCAATCCTTGTTCTGACTGTTTGAACAGATGAAGATGAAGCTGAAATCCAGTATGATAGCAACTGTCTTGTTTGGACTCTCATGTGATAGGCTGGAGGGAGTTCGTATCTGAGTATTAGTCGGTGAACCTATCAGAATAGACTATATGGTAGTAACTATGTTTTGTTTGGTGATTATAATGTTCCCAAAATTTACATTCTTAGTTTCAGGATAGTATTTAAAAATTTGTTTCTACTTGGATTGTATTTTGAATGTCGTCAAGTATTTCCTGAGGTTCGAGATATTATTTGGGGTAACTTTTTAAATTGAATTTTGGTGTTAACAAATAAGTGTTAAAATGCCATTAAACAACCAAATTGATTTCATCCAACTCGGGCACTACTACATCTTTCTTCATGAAGCTTGTGTATCTCTCGCCCAC

mRNA sequence

ATGAGTTTATATAGTGAGAAAAAGGGTATTGGGGGTGGCTTGGAAAGTTCATTTGAAACAGCTTTTTGTGGGTGTTTGCTATGCATTAGGCGTGGGGATGGTGAATGCATTGAAGAGGTAGTGGACATTACTGTGCAACGCGATACAGATTATTATAACCGTACCATATATTTACTCGTGGCTCCATCTTTTGATTTCAAAACCCTAACATTTTACAGTTCTCTCGCCCCTGCGCTTCGTCGTCCACAGATCGAATTCGAGGGAAAAATGAGCGGCCGTGCCAGCAGAACAGTGTATGTCGGCAATCTCCCGGGTGATATTCGTGAAAAGGAAGTGGAAGATTTATTTTATAAGTATGGTCGCATAGCTCACATTGATCTCAAGGTTCCACCAAGGCCTCCAGGTTATGCATTTGTTGAGTTTGAAGATGCGGAAGATGCTCAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGTCATAGGTTGCGTGTGGAGCTTGCTCATGGTGGTCGTGGTCATTCATCTTCCAGTGATCGTCATAGTAGTTATGGAGGCAGCCGAGGTGGCCGTGGAGTATCTCGGCGCTCTGATTATCGTGTATTAGTCACAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAGGATCATATGCGGCGAGCTGGGGATGTTTGTTTCTCCCAAGTGTTCCGTGATGGTAGTGGAACCACAGGGATTGTGGATTACACCAACCTTGATGACATGAAGTATGCAATTAAAAAACTTGATGACTCTGAGTTTCGCAATGCATTTTCTCGGGCATATGTTCGTGTGAGAGAATATGATTCAAAGAAGGATCGCTCCAGGAGTCCTAGTCGTGGGCGGTCATATTCTAGAGAGAGGACTTGTAGTCGCAGTCGCAGTCGTAGCAGAGGCCGAAGTAGGAGCAAGAGCCGCAGTAGGAGCAAGAGCCGCAGTAGGAGCAAGTCCCCAAAAGCTAAATCTTCCCAGCGATCACCTGTTAAATCTCGATCAAGGTCTGTTTCCCCTGCTCGCTCTCGGTCAAAGTCACCATCTCTTTCTGGATCCCGATCAAGATCCAGATCTCCATTGCCCAATCGTGAGAAACGTACTAGTAAAAGTCCTAACCGGCGTGATGCTAGCAAAAGCCCTAGCAGAAGCAGGAGTAAGAGCAAGAGCCCGTCCCGGTAGAGCTTTTGATGAAGATGAAGCTGAAATCCAGTATGATAGCAACTGTCTTGTTTGGACTCTCATGTGATAGGCTGGAGGGAGTTCGTATCTGAGTATTAGTCGGTGAACCTATCAGAATAGACTATATGGTAGTAACTATGTTTTGTTTGGTGATTATAATGTTCCCAAAATTTACATTCTTAGTTTCAGGATAGTATTTAAAAATTTGTTTCTACTTGGATTGTATTTTGAATGTCGTCAAGTATTTCCTGAGGTTCGAGATATTATTTGGGGTAACTTTTTAAATTGAATTTTGGTGTTAACAAATAAGTGTTAAAATGCCATTAAACAACCAAATTGATTTCATCCAACTCGGGCACTACTACATCTTTCTTCATGAAGCTTGTGTATCTCTCGCCCAC

Coding sequence (CDS)

ATGAGTTTATATAGTGAGAAAAAGGGTATTGGGGGTGGCTTGGAAAGTTCATTTGAAACAGCTTTTTGTGGGTGTTTGCTATGCATTAGGCGTGGGGATGGTGAATGCATTGAAGAGGTAGTGGACATTACTGTGCAACGCGATACAGATTATTATAACCGTACCATATATTTACTCGTGGCTCCATCTTTTGATTTCAAAACCCTAACATTTTACAGTTCTCTCGCCCCTGCGCTTCGTCGTCCACAGATCGAATTCGAGGGAAAAATGAGCGGCCGTGCCAGCAGAACAGTGTATGTCGGCAATCTCCCGGGTGATATTCGTGAAAAGGAAGTGGAAGATTTATTTTATAAGTATGGTCGCATAGCTCACATTGATCTCAAGGTTCCACCAAGGCCTCCAGGTTATGCATTTGTTGAGTTTGAAGATGCGGAAGATGCTCAAGATGCTATTCGTGGTCGTGATGGCTATGATTTTGATGGTCATAGGTTGCGTGTGGAGCTTGCTCATGGTGGTCGTGGTCATTCATCTTCCAGTGATCGTCATAGTAGTTATGGAGGCAGCCGAGGTGGCCGTGGAGTATCTCGGCGCTCTGATTATCGTGTATTAGTCACAGGATTACCTTCTTCTGCTTCATGGCAAGACTTAAAGGATCATATGCGGCGAGCTGGGGATGTTTGTTTCTCCCAAGTGTTCCGTGATGGTAGTGGAACCACAGGGATTGTGGATTACACCAACCTTGATGACATGAAGTATGCAATTAAAAAACTTGATGACTCTGAGTTTCGCAATGCATTTTCTCGGGCATATGTTCGTGTGAGAGAATATGATTCAAAGAAGGATCGCTCCAGGAGTCCTAGTCGTGGGCGGTCATATTCTAGAGAGAGGACTTGTAGTCGCAGTCGCAGTCGTAGCAGAGGCCGAAGTAGGAGCAAGAGCCGCAGTAGGAGCAAGAGCCGCAGTAGGAGCAAGTCCCCAAAAGCTAAATCTTCCCAGCGATCACCTGTTAAATCTCGATCAAGGTCTGTTTCCCCTGCTCGCTCTCGGTCAAAGTCACCATCTCTTTCTGGATCCCGATCAAGATCCAGATCTCCATTGCCCAATCGTGAGAAACGTACTAGTAAAAGTCCTAACCGGCGTGATGCTAGCAAAAGCCCTAGCAGAAGCAGGAGTAAGAGCAAGAGCCCGTCCCGGTAG

Protein sequence

MSLYSEKKGIGGGLESSFETAFCGCLLCIRRGDGECIEEVVDITVQRDTDYYNRTIYLLVAPSFDFKTLTFYSSLAPALRRPQIEFEGKMSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQDAIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKAKSSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRRDASKSPSRSRSKSKSPSR

Homology

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BLAST of CmaCh08G004220 vs. Swiss-Prot
Match: SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 5.3e-103
Identity = 225/314 (71.66%), Postives = 252/314 (80.25%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS R+SRTVYVGNLPGDIRE+EVEDLF KYG +  IDLKVPPRPPGYAFVEF+DA DA+D
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGG---------RGVSRRSDY 209
           AI GRDGYDFDGHRLRVELAHGGR  SS   R S  GG RGG         RG SRRS++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 210 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDS 269
           RVLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT  +DMKYA+KKLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 270 EFRNAFSRAYVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSR 329
           EFRNAFS  YVRVREYDS+KD SRSPSRGRSYS+        SRSR R RS SRSRS+SR
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSK--------SRSRSRGRSVSRSRSRSR 240

Query: 330 SRSKSPKAKSSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRR 389
           SRS+SPKAKSS+RSP KS SRS  P RS+S+SPS   SRSRSRSPLP+ +K  SKSP++ 
Sbjct: 241 SRSRSPKAKSSRRSPAKSTSRSPGP-RSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKP 300

Query: 390 DASKSPSRSRSKSK 395
             +KSP  +RS S+
Sbjct: 301 SPAKSPIHTRSPSR 303

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BLAST of CmaCh08G004220 vs. Swiss-Prot
Match: SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 2.1e-91
Identity = 201/278 (72.30%), Postives = 223/278 (80.22%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS R+SRT+YVGNLPGDIRE+EVEDLF KYG +  IDLK+PPRPPGYAFVEFEDA DA D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGG-SRGGRG----------VSRRS 209
           AI GRDGYDFDGH LRVELAHGGR   SS D   SY G  RGGRG           SRRS
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR--RSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRS 120

Query: 210 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLD 269
           +YRV+V+GLPSSASWQDLKDHMR+ G+VCFSQVFRDG GTTGIVDYT+ +DMKYA   LD
Sbjct: 121 EYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LD 180

Query: 270 DSEFRNAFSRAYVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSK 329
           D+EFRNAFS  YVRVREYDS++D SRSPSRGRSYS+        SRSRGRS S+SRSRS+
Sbjct: 181 DTEFRNAFSHEYVRVREYDSRRD-SRSPSRGRSYSK--------SRSRGRSPSRSRSRSR 240

Query: 330 SRSRSKSPKAKSSQRSPVKSRSRSVSPARSRSKSPSLS 357
           SRS+S+SPKAKS +RSP KS SRS   +RSRSKS SLS
Sbjct: 241 SRSKSRSPKAKSLRRSPAKSTSRS-PRSRSRSKSRSLS 263

[Close]

BLAST of CmaCh08G004220 vs. Swiss-Prot
Match: SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 4.2e-84
Identity = 187/297 (62.96%), Postives = 220/297 (74.07%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MSGR SR++YVGNLPGDIRE E+ED+FYKYGRI  I+LKVPPRPP Y FVEFE + DA+D
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRH------SSYGGSRGGRG-----VSRRS 209
           AI+GRDGY+ DG RLRVELAHGGRG SSS  R       S YGG  GG G     VSR S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 210 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLD 269
           ++RV+V GLPSSASWQDLKDHMR+AGDVCF++V RD  GT G+VDYTN DDMKYAI+KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 270 DSEFRNAFSRAYVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSK 329
           D+EFRN ++R ++RV++Y+S + RSRSPSR RS SR R+ SR R RS  RSRS SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 330 SRSRSKSPKAK-----SSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNRE 371
            +  SKSP+       S  RSP   + +S   A SRSKS S S SRS S+SP   RE
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPKVRE 297

[Close]

BLAST of CmaCh08G004220 vs. Swiss-Prot
Match: SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana GN=SR30 PE=1 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 4.4e-81
Identity = 188/278 (67.63%), Postives = 210/278 (75.54%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS R +RT+YVGNLPGDIR+ EVEDLFYKYG I  IDLK+PPRPPGYAFVEFED  DA D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRH-SSYGGSRGGRGVSRRSDYRVLVTGLP 209
           AI GRDGYDFDG RLRVE+AHGGR  S S DR+ SSY  S   R  SRRSDYRVLVTGLP
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSAS---RAPSRRSDYRVLVTGLP 120

Query: 210 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSR 269
            SASWQDLKDHMR+AGDVCFS+VF D  G +G+VDY+N DDMKYAI+KLD +EFRNAFS 
Sbjct: 121 PSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSS 180

Query: 270 AYVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKA 329
           AY+RVREY+S +  SRSP   +SY       RSRSRSRG S S S     S+SRS SP  
Sbjct: 181 AYIRVREYES-RSVSRSPDDSKSY-------RSRSRSRGPSCSYS-----SKSRSVSPAR 240

Query: 330 KSSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPL 367
             S RS   SRSRS+  + SRS+S S S SRSRS SP+
Sbjct: 241 SISPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPV 262

[Close]

BLAST of CmaCh08G004220 vs. Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 219.2 bits (557), Expect = 8.3e-56
Identity = 138/259 (53.28%), Postives = 173/259 (66.80%), Query Frame = 1


Query: 92  GRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQDAI 151
           G   + VYVGNLPGD+REKEVED+F+KYGRI ++D+K   R P +AFVEFED  DA+DA+
Sbjct: 5   GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAV 64

Query: 152 RGRDGYDFDGHRLRVELAHG-------GR-----GHSSSSDRHSSYGGSRGGRGVSRRSD 211
           R RDGY+FDG R+RVE   G       GR     G     D     GG RGG G  RR+ 
Sbjct: 65  RARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGG-GPQRRTG 124

Query: 212 YRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDD 271
           YRV+V GLP + SWQDLKDHMR AGDVC++ V RDG   TG+V++T  +D+KYA++KLDD
Sbjct: 125 YRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARDG---TGVVEFTRYEDVKYAVRKLDD 184

Query: 272 SEFR-NAFSRAYVRVREYDSK----------KDRSRSPSRGRSYSRERTCSRSRSRSRGR 328
           ++FR +    AY+RVRE +S           + RSRSP   R  S + +  RSRSRSR R
Sbjct: 185 TKFRSHEGETAYIRVREDNSSGGGSGGGGRDRSRSRSPRAERRASPKYSPRRSRSRSRSR 244

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BLAST of CmaCh08G004220 vs. TrEMBL
Match: M5VLC3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009045mg PE=4 SV=1)

HSP 1 Score: 435.3 bits (1118), Expect = 8.2e-119
Identity = 250/315 (79.37%), Postives = 274/315 (86.98%), Query Frame = 1


Query: 90  MSGRA-SRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQ 149
           MS R+ SRT+YVGNLPGDIRE+EVEDLF KYGRIAHIDLKVPPRPPGYAFVEFEDA DA+
Sbjct: 1   MSSRSTSRTLYVGNLPGDIREREVEDLFLKYGRIAHIDLKVPPRPPGYAFVEFEDARDAE 60

Query: 150 DAIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLP 209
           DA+RGRDGYDFDGHRLRVELAHGGRGHSSSSDRHS+Y G RGGRG+SRRSD+RVLV+GLP
Sbjct: 61  DALRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSNYSGGRGGRGMSRRSDFRVLVSGLP 120

Query: 210 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSR 269
           SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN DDMKYAIKKLD SEFRNAFSR
Sbjct: 121 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNFDDMKYAIKKLDGSEFRNAFSR 180

Query: 270 AYVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKA 329
           + VRVREYDSK+D SRSPSRGRS+SR R+ SRSR          SRS S+SRSRSKSPK 
Sbjct: 181 SSVRVREYDSKRDSSRSPSRGRSHSRGRSYSRSR----------SRSYSRSRSRSKSPKT 240

Query: 330 KSSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNR------EKRTSKSPNRRDA 389
           KSS+RSP +SRSRS SP RSRS+S S  GSRSRSRSPLP++      +K  SKSP +R A
Sbjct: 241 KSSRRSPARSRSRSASPLRSRSRSRSPLGSRSRSRSPLPSKHISKSPKKHISKSPKKRSA 300

Query: 390 SKSPSRSRSKSKSPS 398
           S+SPSRSRS+S+S S
Sbjct: 301 SRSPSRSRSRSRSRS 305

[Close]

BLAST of CmaCh08G004220 vs. TrEMBL
Match: A0A061DRM9_THECC (RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_004650 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 1.1e-118
Identity = 249/308 (80.84%), Postives = 274/308 (88.96%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS R+SRT+YVGNLPGD+RE+EVEDLFYKYG IAHIDLK+PPRPPGYAFVEFE+A DA+D
Sbjct: 1   MSSRSSRTLYVGNLPGDVREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAED 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPS 209
           AIRGRDGYDF GHRLRVELAHGGRG SS  DRHSS+ G RG RG SRRS+YRVLVTGLPS
Sbjct: 61  AIRGRDGYDFGGHRLRVELAHGGRGRSSV-DRHSSFSGGRG-RGPSRRSEYRVLVTGLPS 120

Query: 210 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRA 269
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 270 YVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKAK 329
           YVRVREYDSK+D SRSPSRGRS SR R+ SRSRSRSR RSRS+ RS S+S+S SKSP+AK
Sbjct: 181 YVRVREYDSKRDSSRSPSRGRSLSRSRSRSRSRSRSRSRSRSRGRSYSRSKSHSKSPRAK 240

Query: 330 SSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRRDASKSPSRS 389
            S++SP KSRSRS S +RS S++ SLS SRSRSRSPLP+R+K  SKSP RR  S+SPS S
Sbjct: 241 PSRKSPAKSRSRSASRSRSASRTRSLSRSRSRSRSPLPSRQKGKSKSPKRRTVSRSPSGS 300

Query: 390 RSKSKSPS 398
           RS+S+S S
Sbjct: 301 RSRSRSKS 306

[Close]

BLAST of CmaCh08G004220 vs. TrEMBL
Match: A0A067JW83_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13928 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 1.1e-118
Identity = 253/309 (81.88%), Postives = 275/309 (89.00%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS RASRT+YVGNLPGDIRE+EVEDLFYKYG IAHIDLK+PPRPPGYAFVEFE+A DA+D
Sbjct: 1   MSSRASRTLYVGNLPGDIREREVEDLFYKYGPIAHIDLKIPPRPPGYAFVEFEEARDAED 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPS 209
           AIRGRDGYDFDGHRLRVELAHGGRGH SSSDRHSSY G R GRGVSRRS+YRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGH-SSSDRHSSYSGGR-GRGVSRRSEYRVLVTGLPS 120

Query: 210 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRA 269
           SASWQDLKDHMR+AGDVCFSQVFRDG GTTGIVDYTN +DMK AIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRQAGDVCFSQVFRDGGGTTGIVDYTNYEDMKQAIKKLDDSEFRNAFSRA 180

Query: 270 YVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKAK 329
           YVRV+EYDSK+D SRSPSRGRS SR R+ SRSRSRSRG      RS S+SRSRSKSPK K
Sbjct: 181 YVRVKEYDSKRD-SRSPSRGRSRSRGRSDSRSRSRSRG------RSSSRSRSRSKSPKTK 240

Query: 330 SSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRRDASKSPSRS 389
           S++R P +SRSRS S +RS SK  SLS SRSRSRSP+P+R+KRTSKSP +R AS+SPS S
Sbjct: 241 STRRLPARSRSRSASRSRSGSKPHSLSRSRSRSRSPIPSRQKRTSKSPKKRSASRSPSGS 300

Query: 390 RSKSKSPSR 399
           RS+SKS SR
Sbjct: 301 RSRSKSLSR 300

[Close]

BLAST of CmaCh08G004220 vs. TrEMBL
Match: A0A0A0K5F5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397040 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 2.4e-118
Identity = 241/268 (89.93%), Postives = 246/268 (91.79%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS RASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPS 209
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DR+SS+GGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 210 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRA 269
           SASWQDLKDHMRRAGDVCFSQVFRDGS   GIVDYTN DDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGS---GIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 270 YVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKAK 329
           YVRVREYDSK+D SRSPSRGRSYSR R+ SRSRSR         RSRSKS SRSKSPKAK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSR--------GRSRSKSHSRSKSPKAK 240

Query: 330 SSQRSPVKSRSRSVSPARSRSKSPSLSG 358
            SQRSPVKSRSRS SP RSRSKS SLSG
Sbjct: 241 PSQRSPVKSRSRSASPPRSRSKSSSLSG 257

[Close]

BLAST of CmaCh08G004220 vs. TrEMBL
Match: A0A0B2QFU2_GLYSO (Pre-mRNA-splicing factor SF2 (Fragment) OS=Glycine soja GN=glysoja_039699 PE=4 SV=1)

HSP 1 Score: 431.4 bits (1108), Expect = 1.2e-117
Identity = 256/348 (73.56%), Postives = 284/348 (81.61%), Query Frame = 1


Query: 62  PSFDFKTLTFYSSL-----------APALRRPQIEFEGKMSGRASRTVYVGNLPGDIREK 121
           P F F   +F S +           +   + PQIE E +MS R+SRTVYVGNLPGDIRE+
Sbjct: 8   PQFPFLVFSFCSKIKNPNQESFHRISTYSQSPQIE-EKRMSRRSSRTVYVGNLPGDIRER 67

Query: 122 EVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQDAIRGRDGYDFDGHRLRVELAH 181
           EVEDLF KYG I HIDLKVPPRPPGYAFVEFEDA+DA+DAIRGRDGYDFDGHRLRVE AH
Sbjct: 68  EVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAH 127

Query: 182 GGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQ 241
           GGRGHSSS DR++S+   RGGRGVSRRS+YRVLV+GLPSSASWQDLKDHMR+AGDVCFSQ
Sbjct: 128 GGRGHSSSRDRYNSHSNGRGGRGVSRRSEYRVLVSGLPSSASWQDLKDHMRKAGDVCFSQ 187

Query: 242 VFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSKKDRSRSPSRGR 301
           VF DG GTTGIVDYTN DDMKYAIKKLDDSEFRNAFS+ YVRVREYDS++D SRSPSRG 
Sbjct: 188 VFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKGYVRVREYDSRRDSSRSPSRGP 247

Query: 302 SYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKAKSSQRSPVKSRSRSVSPARSRS 361
           S+SR R+ SRSRS       S+SRS S+ RS+SKSPK KSSQRSP KS SR  SP+RSRS
Sbjct: 248 SHSRGRSYSRSRS-------SRSRSYSRDRSQSKSPKGKSSQRSPAKSPSR--SPSRSRS 307

Query: 362 KSPSLSGSRSRSRSPLPNREKRTSKSPNRRDASKSPSRSRSKSKSPSR 399
           +S SLSGSRSRSRSPLP R    +KSP +R AS+SPSRSRSKSKS SR
Sbjct: 308 RSRSLSGSRSRSRSPLPPR----NKSPKKRSASRSPSRSRSKSKSLSR 341

[Close]

BLAST of CmaCh08G004220 vs. TAIR10
Match: AT1G02840.1 (AT1G02840.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 375.9 bits (964), Expect = 3.0e-104
Identity = 225/314 (71.66%), Postives = 252/314 (80.25%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS R+SRTVYVGNLPGDIRE+EVEDLF KYG +  IDLKVPPRPPGYAFVEF+DA DA+D
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGG---------RGVSRRSDY 209
           AI GRDGYDFDGHRLRVELAHGGR  SS   R S  GG RGG         RG SRRS++
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEF 120

Query: 210 RVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDS 269
           RVLVTGLPSSASWQDLKDHMR+ GDVCFSQV+RD  GTTG+VDYT  +DMKYA+KKLDD+
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 270 EFRNAFSRAYVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSR 329
           EFRNAFS  YVRVREYDS+KD SRSPSRGRSYS+        SRSR R RS SRSRS+SR
Sbjct: 181 EFRNAFSNGYVRVREYDSRKD-SRSPSRGRSYSK--------SRSRSRGRSVSRSRSRSR 240

Query: 330 SRSKSPKAKSSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRR 389
           SRS+SPKAKSS+RSP KS SRS  P RS+S+SPS   SRSRSRSPLP+ +K  SKSP++ 
Sbjct: 241 SRSRSPKAKSSRRSPAKSTSRSPGP-RSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKP 300

Query: 390 DASKSPSRSRSKSK 395
             +KSP  +RS S+
Sbjct: 301 SPAKSPIHTRSPSR 303

[Close]

BLAST of CmaCh08G004220 vs. TAIR10
Match: AT4G02430.2 (AT4G02430.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 337.4 bits (864), Expect = 1.2e-92
Identity = 201/278 (72.30%), Postives = 223/278 (80.22%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS R+SRT+YVGNLPGDIRE+EVEDLF KYG +  IDLK+PPRPPGYAFVEFEDA DA D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGG-SRGGRG----------VSRRS 209
           AI GRDGYDFDGH LRVELAHGGR   SS D   SY G  RGGRG           SRRS
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR--RSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRS 120

Query: 210 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLD 269
           +YRV+V+GLPSSASWQDLKDHMR+ G+VCFSQVFRDG GTTGIVDYT+ +DMKYA   LD
Sbjct: 121 EYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LD 180

Query: 270 DSEFRNAFSRAYVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSK 329
           D+EFRNAFS  YVRVREYDS++D SRSPSRGRSYS+        SRSRGRS S+SRSRS+
Sbjct: 181 DTEFRNAFSHEYVRVREYDSRRD-SRSPSRGRSYSK--------SRSRGRSPSRSRSRSR 240

Query: 330 SRSRSKSPKAKSSQRSPVKSRSRSVSPARSRSKSPSLS 357
           SRS+S+SPKAKS +RSP KS SRS   +RSRSKS SLS
Sbjct: 241 SRSKSRSPKAKSLRRSPAKSTSRS-PRSRSRSKSRSLS 263

[Close]

BLAST of CmaCh08G004220 vs. TAIR10
Match: AT3G49430.1 (AT3G49430.1 SER/ARG-rich protein 34A)

HSP 1 Score: 313.2 bits (801), Expect = 2.4e-85
Identity = 187/297 (62.96%), Postives = 220/297 (74.07%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MSGR SR++YVGNLPGDIRE E+ED+FYKYGRI  I+LKVPPRPP Y FVEFE + DA+D
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRH------SSYGGSRGGRG-----VSRRS 209
           AI+GRDGY+ DG RLRVELAHGGRG SSS  R       S YGG  GG G     VSR S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120

Query: 210 DYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLD 269
           ++RV+V GLPSSASWQDLKDHMR+AGDVCF++V RD  GT G+VDYTN DDMKYAI+KLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180

Query: 270 DSEFRNAFSRAYVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSK 329
           D+EFRN ++R ++RV++Y+S + RSRSPSR RS SR R+ SR R RS  RSRS SRS+S 
Sbjct: 181 DTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRSKSP 240

Query: 330 SRSRSKSPKAK-----SSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNRE 371
            +  SKSP+       S  RSP   + +S   A SRSKS S S SRS S+SP   RE
Sbjct: 241 RKDLSKSPRRSLSRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSPSKSPPKVRE 297

[Close]

BLAST of CmaCh08G004220 vs. TAIR10
Match: AT1G09140.1 (AT1G09140.1 SERINE-ARGININE PROTEIN 30)

HSP 1 Score: 303.1 bits (775), Expect = 2.5e-82
Identity = 188/278 (67.63%), Postives = 210/278 (75.54%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS R +RT+YVGNLPGDIR+ EVEDLFYKYG I  IDLK+PPRPPGYAFVEFED  DA D
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRH-SSYGGSRGGRGVSRRSDYRVLVTGLP 209
           AI GRDGYDFDG RLRVE+AHGGR  S S DR+ SSY  S   R  SRRSDYRVLVTGLP
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSSSYSAS---RAPSRRSDYRVLVTGLP 120

Query: 210 SSASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSR 269
            SASWQDLKDHMR+AGDVCFS+VF D  G +G+VDY+N DDMKYAI+KLD +EFRNAFS 
Sbjct: 121 PSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSS 180

Query: 270 AYVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKA 329
           AY+RVREY+S +  SRSP   +SY       RSRSRSRG S S S     S+SRS SP  
Sbjct: 181 AYIRVREYES-RSVSRSPDDSKSY-------RSRSRSRGPSCSYS-----SKSRSVSPAR 240

Query: 330 KSSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPL 367
             S RS   SRSRS+  + SRS+S S S SRSRS SP+
Sbjct: 241 SISPRSRPLSRSRSLYSSVSRSQSRSKSRSRSRSNSPV 262

[Close]

BLAST of CmaCh08G004220 vs. TAIR10
Match: AT4G31580.1 (AT4G31580.1 serine/arginine-rich 22)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-12
Identity = 47/109 (43.12%), Postives = 58/109 (53.21%), Query Frame = 1


Query: 98  VYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQDAIRGRDGY 157
           VYVGNL   + E+E+ED F  +G +  +   V  RPPGYAF++FED  DA+DAIR  DG 
Sbjct: 4   VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDGK 63

Query: 158 DFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTG 207
             +G R+      G RG           GG RGGRG S    Y    TG
Sbjct: 64  --NGWRVEQSHNRGERGGGGRGGDRGGGGGGRGGRGGSDLKCYECGETG 108

[Close]

BLAST of CmaCh08G004220 vs. NCBI nr
Match: gi|659101361|ref|XP_008451568.1| (PREDICTED: pre-mRNA-splicing factor SF2-like isoform X1 [Cucumis melo])

HSP 1 Score: 501.5 bits (1290), Expect = 1.3e-138
Identity = 283/309 (91.59%), Postives = 290/309 (93.85%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS RASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPS 209
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDR+SS+GGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 210 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRA 269
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 270 YVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKAK 329
           YVRVREYDSK+D SRSPSRGRSYSR R+ SRSRSR         RSRSKS SRSKSPKAK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSR--------GRSRSKSHSRSKSPKAK 240

Query: 330 SSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRRDASKSPSRS 389
           SSQRSPVKSRSRS SPARSRSKS SLSGSRSRSRSP+PNREKRTSKSP RRDASKSPSRS
Sbjct: 241 SSQRSPVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNREKRTSKSPKRRDASKSPSRS 300

Query: 390 RSKSKSPSR 399
           RS+S+S SR
Sbjct: 301 RSRSRSRSR 301

[Close]

BLAST of CmaCh08G004220 vs. NCBI nr
Match: gi|449436495|ref|XP_004136028.1| (PREDICTED: serine/arginine-rich-splicing factor SR34 isoform X1 [Cucumis sativus])

HSP 1 Score: 493.8 bits (1270), Expect = 2.8e-136
Identity = 282/317 (88.96%), Postives = 289/317 (91.17%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS RASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPS 209
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DR+SS+GGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 210 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRA 269
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 270 YVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKAK 329
           YVRVREYDSK+D SRSPSRGRSYSR R+ SRSRSR R        SRSKS SRSKSPKAK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSRGR--------SRSKSHSRSKSPKAK 240

Query: 330 SSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRRDASKSPSR- 389
            SQRSPVKSRSRS SP RSRSKS SLSGSRSRSRSP+PNREKRTSKSP RRDASKSPSR 
Sbjct: 241 PSQRSPVKSRSRSASPPRSRSKSSSLSGSRSRSRSPVPNREKRTSKSPKRRDASKSPSRS 300

Query: 390 -------SRSKSKSPSR 399
                  S+SKSKSPSR
Sbjct: 301 RSRSRSKSKSKSKSPSR 309

[Close]

BLAST of CmaCh08G004220 vs. NCBI nr
Match: gi|659101363|ref|XP_008451569.1| (PREDICTED: pre-mRNA-splicing factor SF2-like isoform X2 [Cucumis melo])

HSP 1 Score: 490.0 bits (1260), Expect = 4.0e-135
Identity = 280/309 (90.61%), Postives = 287/309 (92.88%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS RASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPS 209
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDR+SS+GGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 210 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRA 269
           SASWQDLKDHMRRAGDVCFSQVFRDGS   GIVDYTN DDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGS---GIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 270 YVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKAK 329
           YVRVREYDSK+D SRSPSRGRSYSR R+ SRSRSR         RSRSKS SRSKSPKAK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSR--------GRSRSKSHSRSKSPKAK 240

Query: 330 SSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRRDASKSPSRS 389
           SSQRSPVKSRSRS SPARSRSKS SLSGSRSRSRSP+PNREKRTSKSP RRDASKSPSRS
Sbjct: 241 SSQRSPVKSRSRSASPARSRSKSSSLSGSRSRSRSPVPNREKRTSKSPKRRDASKSPSRS 298

Query: 390 RSKSKSPSR 399
           RS+S+S SR
Sbjct: 301 RSRSRSRSR 298

[Close]

BLAST of CmaCh08G004220 vs. NCBI nr
Match: gi|778728039|ref|XP_011659359.1| (PREDICTED: serine/arginine-rich-splicing factor SR34 isoform X2 [Cucumis sativus])

HSP 1 Score: 484.2 bits (1245), Expect = 2.2e-133
Identity = 276/309 (89.32%), Postives = 285/309 (92.23%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS RASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD
Sbjct: 1   MSSRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPS 209
           AIRGRDGYDFDGHRLRVELAHGGRGHSSS+DR+SS+GGSRGGRGVSRRSDYRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSNDRYSSHGGSRGGRGVSRRSDYRVLVTGLPS 120

Query: 210 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRA 269
           SASWQDLKDHMRRAGDVCFSQVFRDGS   GIVDYTN DDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGS---GIVDYTNYDDMKYAIKKLDDSEFRNAFSRA 180

Query: 270 YVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKAK 329
           YVRVREYDSK+D SRSPSRGRSYSR R+ SRSRSR         RSRSKS SRSKSPKAK
Sbjct: 181 YVRVREYDSKRDLSRSPSRGRSYSRGRSYSRSRSR--------GRSRSKSHSRSKSPKAK 240

Query: 330 SSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRRDASKSPSRS 389
            SQRSPVKSRSRS SP RSRSKS SLSGSRSRSRSP+PNREKRTSKSP RRDASKSPSRS
Sbjct: 241 PSQRSPVKSRSRSASPPRSRSKSSSLSGSRSRSRSPVPNREKRTSKSPKRRDASKSPSRS 298

Query: 390 RSKSKSPSR 399
           RS+S+S S+
Sbjct: 301 RSRSRSKSK 298

[Close]

BLAST of CmaCh08G004220 vs. NCBI nr
Match: gi|1009148321|ref|XP_015891875.1| (PREDICTED: serine/arginine-rich-splicing factor SR34 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 463.8 bits (1192), Expect = 3.1e-127
Identity = 262/306 (85.62%), Postives = 281/306 (91.83%), Query Frame = 1


Query: 90  MSGRASRTVYVGNLPGDIREKEVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDAEDAQD 149
           MS RASRT+YVGNLPGDIRE+EVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDA DA+D
Sbjct: 1   MSSRASRTLYVGNLPGDIREREVEDLFYKYGRIAHIDLKVPPRPPGYAFVEFEDARDAED 60

Query: 150 AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRHSSYGGSRGGRGVSRRSDYRVLVTGLPS 209
           AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDR+SSY G RGGRGVSRRS+YRVLVTGLPS
Sbjct: 61  AIRGRDGYDFDGHRLRVELAHGGRGHSSSSDRYSSYSGGRGGRGVSRRSEYRVLVTGLPS 120

Query: 210 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNLDDMKYAIKKLDDSEFRNAFSRA 269
           SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTN DDMKYAIKKLDDSEFRNAFSRA
Sbjct: 121 SASWQDLKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNHDDMKYAIKKLDDSEFRNAFSRA 180

Query: 270 YVRVREYDSKKDRSRSPSRGRSYSRERTCSRSRSRSRGRSRSKSRSRSKSRSRSKSPKAK 329
           YVRVREYDS++D SRSPSRGRS+SR R+ SRSRSR        SRSRS+SRSRSKSPKAK
Sbjct: 181 YVRVREYDSRRDSSRSPSRGRSHSRNRSYSRSRSR--------SRSRSQSRSRSKSPKAK 240

Query: 330 SSQRSPVKSRSRSVSPARSRSKSPSLSGSRSRSRSPLPNREKRTSKSPNRRDASKSPSRS 389
           SS+RSP KS+SRS S +RS SKSPSLSGSRSRSRSPLP+  K+TSKSP +R  S+SPSRS
Sbjct: 241 SSRRSPAKSQSRSRSRSRSGSKSPSLSGSRSRSRSPLPS--KQTSKSPKKRSPSRSPSRS 296

Query: 390 RSKSKS 396
           RS+S+S
Sbjct: 301 RSRSRS 296

The following BLAST results are available for this feature:

BLAST of CmaCh08G004220 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SR34_ARATH	5.3e-103	71.66	Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 S...	[more]
SR34B_ARATH	2.1e-91	72.30	Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2...	[more]
SR34A_ARATH	4.2e-84	62.96	Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2...	[more]
SR30_ARATH	4.4e-81	67.63	Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana GN=SR30 PE=1 S...	[more]
RSP3_CAEEL	8.3e-56	53.28	Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rs...	[more]

BLAST of CmaCh08G004220 vs. TrEMBL


Match Name	E-value	Identity	Description
M5VLC3_PRUPE	8.2e-119	79.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009045mg PE=4 SV=1	[more]
A0A061DRM9_THECC	1.1e-118	80.84	RNA-binding family protein isoform 2 OS=Theobroma cacao GN=TCM_004650 PE=4 SV=1	[more]
A0A067JW83_JATCU	1.1e-118	81.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13928 PE=4 SV=1	[more]
A0A0A0K5F5_CUCSA	2.4e-118	89.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G397040 PE=4 SV=1	[more]
A0A0B2QFU2_GLYSO	1.2e-117	73.56	Pre-mRNA-splicing factor SF2 (Fragment) OS=Glycine soja GN=glysoja_039699 PE=4 S...	[more]

BLAST of CmaCh08G004220 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02840.1	3.0e-104	71.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G02430.2	1.2e-92	72.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G49430.1	2.4e-85	62.96	SER/ARG-rich protein 34A	[more]
AT1G09140.1	2.5e-82	67.63	SERINE-ARGININE PROTEIN 30	[more]
AT4G31580.1	1.2e-12	43.12	serine/arginine-rich 22	[more]

BLAST of CmaCh08G004220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659101361\|ref\|XP_008451568.1\|	1.3e-138	91.59	PREDICTED: pre-mRNA-splicing factor SF2-like isoform X1 [Cucumis melo]	[more]
gi\|449436495\|ref\|XP_004136028.1\|	2.8e-136	88.96	PREDICTED: serine/arginine-rich-splicing factor SR34 isoform X1 [Cucumis sativus...	[more]
gi\|659101363\|ref\|XP_008451569.1\|	4.0e-135	90.61	PREDICTED: pre-mRNA-splicing factor SF2-like isoform X2 [Cucumis melo]	[more]
gi\|778728039\|ref\|XP_011659359.1\|	2.2e-133	89.32	PREDICTED: serine/arginine-rich-splicing factor SR34 isoform X2 [Cucumis sativus...	[more]
gi\|1009148321\|ref\|XP_015891875.1\|	3.1e-127	85.62	PREDICTED: serine/arginine-rich-splicing factor SR34 isoform X1 [Ziziphus jujuba...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G004220.1	CmaCh08G004220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 202..264 score: 8.5E-10coord: 98..165 score: 3.9
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 97..167 score: 2.3E-23coord: 201..272 score: 1.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 96..171 score: 18.803coord: 200..278 score: 9
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 86..176 score: 7.3E-27coord: 196..290 score: 5.3
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 95..267 score: 4.44
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 74..177 score: 2.3E-33coord: 384..393 score: 2.3E-33coord: 197..282 score: 2.3
None	No IPR available	PANTHER	PTHR24012:SF442	SERINE/ARGININE-RICH SPLICING FACTOR 4	coord: 384..393 score: 2.3E-33coord: 197..282 score: 2.3E-33coord: 74..177 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G004220	Cucsa.205570	Cucumber (Gy14) v1	cgycmaB0608
CmaCh08G004220	Cla015068	Watermelon (97103) v1	cmawmB856
CmaCh08G004220	Csa7G397040	Cucumber (Chinese Long) v2	cmacuB914
CmaCh08G004220	MELO3C016002	Melon (DHL92) v3.5.1	cmameB831
CmaCh08G004220	ClCG09G005890	Watermelon (Charleston Gray)	cmawcgB786
CmaCh08G004220	CSPI07G17470	Wild cucumber (PI 183967)	cmacpiB934
CmaCh08G004220	CmoCh08G004160	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G004220	CmoCh17G010640	Cucurbita moschata (Rifu)	cmacmoB896
CmaCh08G004220	Lsi02G024030	Bottle gourd (USVL1VR-Ls)	cmalsiB822
CmaCh08G004220	Cp4.1LG12g05820	Cucurbita pepo (Zucchini)	cmacpeB902
CmaCh08G004220	Cp4.1LG17g07160	Cucurbita pepo (Zucchini)	cmacpeB917
CmaCh08G004220	MELO3C016002.2	Melon (DHL92) v3.6.1	cmamedB930
CmaCh08G004220	CsaV3_7G029260	Cucumber (Chinese Long) v3	cmacucB1084
CmaCh08G004220	Cla97C09G168380	Watermelon (97103) v2	cmawmbB940
CmaCh08G004220	Bhi09G000716	Wax gourd	cmawgoB1119
CmaCh08G004220	CsGy7G015910	Cucumber (Gy14) v2	cgybcmaB973
CmaCh08G004220	Carg12102	Silver-seed gourd	carcmaB0792
CmaCh08G004220	Carg07172	Silver-seed gourd	carcmaB0148

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh08G004220	CmaCh17G010880	Cucurbita maxima (Rimu)	cmacmaB382

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G004220	Cucumber (Chinese Long) v2	cmacuB894
CmaCh08G004220	Melon (DHL92) v3.5.1	cmameB854
CmaCh08G004220	Cucumber (Chinese Long) v3	cmacucB1062
CmaCh08G004220	Wax gourd	cmawgoB1087
CmaCh08G004220	Cucurbita maxima (Rimu)	cmacmaB293
CmaCh08G004220	Cucumber (Gy14) v1	cgycmaB0206
CmaCh08G004220	Wild cucumber (PI 183967)	cmacpiB913