CmaCh08G000590 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G000590
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr08 : 344410 .. 344820 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAATTGTTTATGGCTATGCTCCTGGCTCTTCTGGCCACTCACGCCCTAGCTAGACCCACGCCCAAGGACGCCACCTTCACTGACCAAAAGAACTTCCTAACATACGGAGGACTCGGTGGCTACTCCGGCATCGGCAGCAACGGCCTCCCATTTGGCGGCCTTGGCGGTGCCGTTGGAGGAACTGGCCCTGGTGGTATTGGTGGAGGAATTGGTGGACTTGGTGGATTTGGAGGCGGAGGCGCTGGTCTCGGTGGTGGTCTTGGTGGTGGTCTTGGTGGTGGTCTCGGTGGCGGTGGCCTTGGAGGAACCATGGGAGGTGGTAACCTCGGTGGCGGTCTCGGTGGTACAGTTGGCGGCGGTCTCGGCGGTGGTGTTGGTGGTGGTGGCGGCTCTGGGCTTCCATGA

mRNA sequence

ATGGCCAAATTGTTTATGGCTATGCTCCTGGCTCTTCTGGCCACTCACGCCCTAGCTAGACCCACGCCCAAGGACGCCACCTTCACTGACCAAAAGAACTTCCTAACATACGGAGGACTCGGTGGCTACTCCGGCATCGGCAGCAACGGCCTCCCATTTGGCGGCCTTGGCGGTGCCGTTGGAGGAACTGGCCCTGGTGGTATTGGTGGAGGAATTGGTGGACTTGGTGGATTTGGAGGCGGAGGCGCTGGTCTCGGTGGTGGTCTTGGTGGTGGTCTTGGTGGTGGTCTCGGTGGCGGTGGCCTTGGAGGAACCATGGGAGGTGGTAACCTCGGTGGCGGTCTCGGTGGTACAGTTGGCGGCGGTCTCGGCGGTGGTGTTGGTGGTGGTGGCGGCTCTGGGCTTCCATGA

Coding sequence (CDS)

ATGGCCAAATTGTTTATGGCTATGCTCCTGGCTCTTCTGGCCACTCACGCCCTAGCTAGACCCACGCCCAAGGACGCCACCTTCACTGACCAAAAGAACTTCCTAACATACGGAGGACTCGGTGGCTACTCCGGCATCGGCAGCAACGGCCTCCCATTTGGCGGCCTTGGCGGTGCCGTTGGAGGAACTGGCCCTGGTGGTATTGGTGGAGGAATTGGTGGACTTGGTGGATTTGGAGGCGGAGGCGCTGGTCTCGGTGGTGGTCTTGGTGGTGGTCTTGGTGGTGGTCTCGGTGGCGGTGGCCTTGGAGGAACCATGGGAGGTGGTAACCTCGGTGGCGGTCTCGGTGGTACAGTTGGCGGCGGTCTCGGCGGTGGTGTTGGTGGTGGTGGCGGCTCTGGGCTTCCATGA

Protein sequence

MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAVGGTGPGGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLGGGGLGGTMGGGNLGGGLGGTVGGGLGGGVGGGGGSGLP

Homology

[Close]

BLAST of CmaCh08G000590 vs. TrEMBL
Match: A0A0A0K9U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336450 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 9.9e-24
Identity = 104/137 (75.91%), Postives = 115/137 (83.94%), Query Frame = 1


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIG+NGLPFGGLGGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GGTGPGGIGGGI-GGLGGFGGGGAGLGGGLGGGLGGGLGGGGLGGTMGGGNLGGGLGGTV 120
           GG   GG+GGG+ GGLGG  GGG G+GGGLGG  G G G GG+GGT GG  LGGGLGG +
Sbjct: 61  GG---GGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGG--LGGGLGGGL 120

Query: 121 GGGLGGGVGGGGGSGLP 137
           GGGLGGGVGG  G   P
Sbjct: 121 GGGLGGGVGGASGVTYP 132

[Close]

BLAST of CmaCh08G000590 vs. TrEMBL
Match: A0A0A0K6P3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336480 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.7e-20
Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLF+A+LLAL+ATHALARP     TF DQKNFLTYGGLGGYSGIGSNGLPFGG+GG +
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GGTGPGGIGGGIG---GLGGFGGGGAGLGGGLGGGLGGGLG-GGGLGGT 106
           GGTGPGG+GGG+G   G+GG GG G G  GGLG G GGG+G GGG G T
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLT 109

[Close]

BLAST of CmaCh08G000590 vs. TrEMBL
Match: I1JPC2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G170900 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.3e-11
Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1


Query: 1   MAKLFMAMLLALLATHALAR--PTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGG 60
           MAK+ + +L+  LA    AR  P PKDA   DQKNF++YGG+GGYSGIG+NGLPFGG G 
Sbjct: 1   MAKMCVLVLVLALAVATSARNVPNPKDAGLKDQKNFISYGGVGGYSGIGNNGLPFGGAGA 60

Query: 61  AVGG--TGPGGIGGGI----GGLGGFGGGGAGLGGGLGGGLGGGLGGG 101
            +GG   G GG+GGG+    GG+GGFGG G+G+GGG+GGG+G G+GGG
Sbjct: 61  GIGGGFGGGGGLGGGLGGPTGGIGGFGGTGSGVGGGIGGGVGTGVGGG 108

[Close]

BLAST of CmaCh08G000590 vs. TrEMBL
Match: A0A151TUS4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_010009 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.7e-10
Identity = 65/115 (56.52%), Postives = 79/115 (68.70%), Query Frame = 1


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MA+  + ++L  LA    AR  P DA   DQKNF+ YGG+GGYSG+G NGLPFGG+G  V
Sbjct: 1   MARWCVMVMLLALAVATSARNVPNDAGLKDQKNFIGYGGVGGYSGVGGNGLPFGGVGAGV 60

Query: 61  GGTGPGGIGGG------IGGLGGFGG------GGAGLGGGLGGGLGGGLGGGGLG 104
           GG   GG+GGG      IGG+GGFGG      GG+G+GGG+GGG+G GLGGGG G
Sbjct: 61  GGGFGGGLGGGLGGTSGIGGIGGFGGTGGGLGGGSGIGGGVGGGVGTGLGGGGTG 115

[Close]

BLAST of CmaCh08G000590 vs. TrEMBL
Match: V7CWV7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G168900g PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-10
Identity = 74/132 (56.06%), Postives = 83/132 (62.88%), Query Frame = 1


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKL + +L+  LA    AR  P DA   DQKNFLTYGG+GGYSGIGSNGLPFGG+G  +
Sbjct: 1   MAKLCVLVLVLALAVATSARNAPTDAGLKDQKNFLTYGGVGGYSGIGSNGLPFGGVGAGI 60

Query: 61  GGTGPGGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLGGGGLGGTMGGGNLGGGLGGTVG 120
           GG                   G G GGGLGGGLGG  G GGLGG    G  GGG+GG VG
Sbjct: 61  GG-------------------GFGAGGGLGGGLGGTTGIGGLGGL---GGTGGGVGGGVG 110

Query: 121 GGLGGGVGGGGG 133
           GG+G G+GGG G
Sbjct: 121 GGVGTGIGGGSG 110

[Close]

BLAST of CmaCh08G000590 vs. NCBI nr
Match: gi|778730344|ref|XP_011659762.1| (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus])

HSP 1 Score: 117.9 bits (294), Expect = 1.4e-23
Identity = 104/137 (75.91%), Postives = 115/137 (83.94%), Query Frame = 1


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIG+NGLPFGGLGGA+
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGNNGLPFGGLGGAI 60

Query: 61  GGTGPGGIGGGI-GGLGGFGGGGAGLGGGLGGGLGGGLGGGGLGGTMGGGNLGGGLGGTV 120
           GG   GG+GGG+ GGLGG  GGG G+GGGLGG  G G G GG+GGT GG  LGGGLGG +
Sbjct: 61  GG---GGLGGGLGGGLGGGLGGGTGIGGGLGGLGGPGGGFGGIGGTTGG--LGGGLGGGL 120

Query: 121 GGGLGGGVGGGGGSGLP 137
           GGGLGGGVGG  G   P
Sbjct: 121 GGGLGGGVGGASGVTYP 132

[Close]

BLAST of CmaCh08G000590 vs. NCBI nr
Match: gi|659124371|ref|XP_008462124.1| (PREDICTED: acanthoscurrin-1-like [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 99/135 (73.33%), Postives = 110/135 (81.48%), Query Frame = 1


Query: 6   MAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAVGGTGP 65
           MA+LLAL+ATHALARPTPKD TF+DQKNFLTYGG+GGYSGIGSNGLPFGG+GGA+GG   
Sbjct: 1   MALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAIGG--- 60

Query: 66  GGIGGGIGGLGGFGGGGAGLGGGLGG--GLGGGLGGGGLGGTMGG--GNLGGGLGGTVGG 125
           GG+GGG+GG  G GG   G+GGGLGG  G GGGLGG  +GGT GG  G LGGGLGG +GG
Sbjct: 61  GGLGGGLGG--GLGGA-TGIGGGLGGLGGTGGGLGG--IGGTTGGLGGGLGGGLGGGLGG 120

Query: 126 GLGGGVGGGGGSGLP 137
           GLGGGVGG  G   P
Sbjct: 121 GLGGGVGGASGVTYP 127

[Close]

BLAST of CmaCh08G000590 vs. NCBI nr
Match: gi|659124133|ref|XP_008462002.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 91/135 (67.41%), Postives = 96/135 (71.11%), Query Frame = 1


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLFMA+LLAL+ATHALARP     TF DQKNFLTYGGLGGYSGIGSNGLPFGG+GG V
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGPGGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLGGGGLGGTMGGGNLGGGLGGTVG 120
           GGTGPGG+GGG+GG  G GG      GGLGGG  GGLG G                  VG
Sbjct: 61  GGTGPGGLGGGLGGATGIGG-----LGGLGGGAAGGLGSG------------------VG 112

Query: 121 GGLGGGVGGGGGSGL 136
           GG GGGVG GGGSGL
Sbjct: 121 GGAGGGVGVGGGSGL 112

[Close]

BLAST of CmaCh08G000590 vs. NCBI nr
Match: gi|778726832|ref|XP_011659167.1| (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 9.5e-20
Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLF+A+LLAL+ATHALARP     TF DQKNFLTYGGLGGYSGIGSNGLPFGG+GG +
Sbjct: 28  MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 87

Query: 61  GGTGPGGIGGGIG---GLGGFGGGGAGLGGGLGGGLGGGLG-GGGLGGT 106
           GGTGPGG+GGG+G   G+GG GG G G  GGLG G GGG+G GGG G T
Sbjct: 88  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLT 136

[Close]

BLAST of CmaCh08G000590 vs. NCBI nr
Match: gi|700189336|gb|KGN44569.1| (hypothetical protein Csa_7G336480 [Cucumis sativus])

HSP 1 Score: 105.1 bits (261), Expect = 9.5e-20
Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60
           MAKLF+A+LLAL+ATHALARP     TF DQKNFLTYGGLGGYSGIGSNGLPFGG+GG +
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GGTGPGGIGGGIG---GLGGFGGGGAGLGGGLGGGLGGGLG-GGGLGGT 106
           GGTGPGG+GGG+G   G+GG GG G G  GGLG G GGG+G GGG G T
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLT 109

The following BLAST results are available for this feature:

BLAST of CmaCh08G000590 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G000590 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9U1_CUCSA	9.9e-24	75.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336450 PE=4 SV=1	[more]
A0A0A0K6P3_CUCSA	6.7e-20	73.39	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336480 PE=4 SV=1	[more]
I1JPC2_SOYBN	4.3e-11	59.26	Uncharacterized protein OS=Glycine max GN=GLYMA_03G170900 PE=4 SV=1	[more]
A0A151TUS4_CAJCA	3.7e-10	56.52	Uncharacterized protein OS=Cajanus cajan GN=KK1_010009 PE=4 SV=1	[more]
V7CWV7_PHAVU	4.8e-10	56.06	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G168900g PE=4 SV=1	[more]

BLAST of CmaCh08G000590 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh08G000590 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730344\|ref\|XP_011659762.1\|	1.4e-23	75.91	PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis sativus]	[more]
gi\|659124371\|ref\|XP_008462124.1\|	1.1e-20	73.33	PREDICTED: acanthoscurrin-1-like [Cucumis melo]	[more]
gi\|659124133\|ref\|XP_008462002.1\|	2.5e-20	67.41	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]	[more]
gi\|778726832\|ref\|XP_011659167.1\|	9.5e-20	73.39	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis sativus]	[more]
gi\|700189336\|gb\|KGN44569.1\|	9.5e-20	73.39	hypothetical protein Csa_7G336480 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G000590.1	CmaCh08G000590.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G000590	CsaV3_7G025650	Cucumber (Chinese Long) v3	cmacucB1086
CmaCh08G000590	Carg25548	Silver-seed gourd	carcmaB0592

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G000590	Watermelon (97103) v2	cmawmbB943
CmaCh08G000590	Wax gourd	cmawgoB1126
CmaCh08G000590	Wax gourd	cmawgoB1136
CmaCh08G000590	Cucurbita maxima (Rimu)	cmacmaB378
CmaCh08G000590	Cucurbita maxima (Rimu)	cmacmaB466
CmaCh08G000590	Cucumber (Gy14) v1	cgycmaB0145
CmaCh08G000590	Cucurbita moschata (Rifu)	cmacmoB892
CmaCh08G000590	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G000590	Wild cucumber (PI 183967)	cmacpiB907
CmaCh08G000590	Wild cucumber (PI 183967)	cmacpiB936
CmaCh08G000590	Cucumber (Chinese Long) v2	cmacuB916
CmaCh08G000590	Watermelon (Charleston Gray)	cmawcgB789
CmaCh08G000590	Watermelon (Charleston Gray)	cmawcgB810
CmaCh08G000590	Watermelon (97103) v1	cmawmB859
CmaCh08G000590	Cucurbita pepo (Zucchini)	cmacpeB899
CmaCh08G000590	Cucurbita pepo (Zucchini)	cmacpeB914
CmaCh08G000590	Bottle gourd (USVL1VR-Ls)	cmalsiB837
CmaCh08G000590	Bottle gourd (USVL1VR-Ls)	cmalsiB824
CmaCh08G000590	Cucumber (Gy14) v2	cgybcmaB457
CmaCh08G000590	Cucumber (Gy14) v2	cgybcmaB975
CmaCh08G000590	Melon (DHL92) v3.6.1	cmamedB936
CmaCh08G000590	Silver-seed gourd	carcmaB0112
CmaCh08G000590	Silver-seed gourd	carcmaB1090