CmaCh05G008780 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh05G008780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH dehydrogenase subunit F
LocationCma_Chr05 : 6298524 .. 6302314 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGAGAAGAAAAAAGGCGCACGGACCGTACTTGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCCCGTCTTTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACGTAAGATAGTCAAAGTACGGTTGAGCAATCGACATGATATATTTTCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGATGTAGAGTGAAAGATTCGCCAGGTGTGAAATCCCATTATATTCGAGGAGTCAAGGATTTGCTGGGAATTCCAGATCGAAGAAGAGGAAGATCTAAATATGGTGCAGAAAAACCTAAATCGATATGAATGGAAGATGCCTCTTTCACTTCTTTTTCTCGGCCAGTCGAGGGAAAGGGAACAACCAACCACAATGTTACGCCCTAAAATCGAACTATACGGAGCACTTCCGAATGACCTCTCATGGAGTCTGCTACACTAGCCAAGAAAGAGTGTATTAGACTCTATTCGCCCGTGGAGGTGAGTGGAGGAAGAATAAAAAAAGAGAAAGGTATTGCTACTAAGAAATAGTTGCTCATTCATAAATGAAGTTAACCACTTCTTCTTAGTCTTGCTACACTACACGGCACGATGGGTGAAGTTGAAGCAGACACGGTCTTCAGTCGACTGAACAAGTGATTCACCATATGGAAATAAGAAAAAAAAGAAGAGAAGGGTCTCGCCCAGGTGGCTCCCGCAAGGTAAGGTAACGACTTCAAACTCAAACAAAGAACGTTCTTCTCCAAGGCGTATGAGTCAAAGAAAATGTTGTATCTATCTAATGCAAGACCCGTCGATAAGCTAAGGCTACGAGCGGATCATTAGGTTCGCTCGGTTGGGCTCAACCTCAGAGAATTGAGTGAACAGGAAAGGGAGGACGCCGGCTAATCTCTTCCAAGGAGTATCGGGGGGTGGAATGGCAAATGAACCTTTTCGAGGCTCGGGCCAAAGAGCTAAAGCAAAAGGCCGCTGAGCTCATTCATCCTCGTTCCATTCCAGTGGATGAAGATCAGATGTGGGGCTGGCAATCAATCTTCTCTTGGAGAAGAAGAGAGAGAGGCGACCTTAGATTCCTCCCCAGGGCGATGAAGGCCATTGAGAATGGCAAAAGCCACTTTTAGAAAGCGTTCCTCCCTCCTTAAACTCAAAGGATTAAACCCGAACGCTACCTGTGAATGATTCCACAGCGTAGAGCTTCAATCAATAGGCCATTTCCGTCGGATTTTCTCCTCAGCAATGCCCACTCCCATGGCTTTCTTGGTTGGACCAACCCAACCGGCTATTTCTGAAAAGTCTTACGATTACGCCCAACAGCCCACTTGAGCAATTTTCCATTCTTCCATTGATTCCTATGAATATAACCTACATGTCAAATAGAGGCCACAATTATGGTCCAAGTAATAAATGCCCAAGTTTCTTTTGGATCCCAATTCCAATACGATCCCCATGTCTCATTAACCCATATGGCCCTTGAAAGAATACCTATGCTTAAAAAGATAAACCCTAGACTAAGTTCTCTTCCTTCATGTATTGGAATCAAAGGAAAATAACGCATTTAATAAATGATGATTGTTTTTTTTTTACCAAGAATTCTTATAGATAGAGTTTGGAAATGGAATCACTCTGACTTGCATCATTAACCAATGAGATTGGAGAGCGGGAACTCATAGTGGGAATTGATGCATTTCAGTTAAAAAACCTGAAGTAGCAAAACCTTGGGGAAAAATAGTACTTGGTGTAGTTATTGCTCTTAAATAGTTTAATAATGGAGCAACCCCATGAAAGAAATAGTAATGATTCATATAAATCACTTAATGGTAAGTGTTTCAAATAAATCCAACTAGTAACTAATAATCCTGTTATACAGAAAAAAGTAGCTATCATGCCCTTCCTTTTCTGATGAAGCATAGAGTCCTATGGTTTCATCGACTAATAAGGTTATCAAATTCATTGTTTAATGATTCGTAATGAATTTAATACAAATCAGTATGATTTTACTGGATCCACTTGTAGACTGGCTTTTATGATTGATACCAAAATGAAATAGTGTTTTTCATCTAATTATTCATTCCTTCTTTCTCTATAGCAGGAAATTTGTGTAATGCATATTATCTAATAATAATAAAGAAAATTAGCAGTTTCTATATTGGATATTCTAATTTGTTAGTAACTGATCCTTTTGAAAAGAGATAAGAGCTGGTGAATCAGAAAAATGAATTAGGAATTCAATATACTTGTTTTATGGAATATACATATCAATATTCATGGATCATACCTTTCATCTCACTTTCAATTCCTATTTTAATAGGAGTGGGACTTCTACTTTCTTTTTTCGAACGCAACCAAAACCCTTCGACGTATGTACTCTTTTTCGAGTATTTGATTGTCTAGTATAGTTATGACTTTTTCAGTTTATCTATCTATCTATTGATCAAATAAATAGTAGTTATATCTATCCATATGTATGGTCTTGGACTATCAATAATGCTTTTTCTTTAGAGTTGGGTTACTTTACTTGATCGATCCACTTACTTGTATTATGTCAATATTAATCACGATGGAATTATGGTTCTTATTTATAGTGACAATTATATATCTCATGATCAAGGATATTTAAGAGCGTATATGAGTTTGTTCAATAGGTCAATGTTGGGATTAGTTACTAGTTCGAATTTGATCCAAATTTCTCTTTTTTGAGAATTGGTTGGAATGTGGTCTTATATATTAATAGGGTTTTGGTTCACTCCACCTACTCCTGCTGCATCAAATGCTTGTCAAAAGGTATTTGTAACTAATTGCGTGGGGGATTTGGGTTTATTTCTTATTAGGGATTTTAGGTCTTTATTGGACAATAGGGAGTTTTGCATTTCAGGATTGATTTCTAATAATGAGGTGAATTTCTTATTTGTTACTTTGTGCGCCGTCCTTCCTATTATTTGCAGGTACAGTTGCTAAATCCGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCGATTTTGGCTCTTATACATGCTGCTACGATGGTAGGGGAAGTTTTCTTGTTGCTCGGCTTCTTCCGCTTTTTTATAGTAACACCTTACATTATGAATCTAATAGTTAGGAATAATAACGGTACTATATTGGAGCTACTTTAGCTCTTGCTCAAAAAGAGATTAAGAGAAGTTTAGCAAGCCTATTCTACAATGTCTCAATTGGATTAAACGTATGATGTTAGCTGCTTTGGGTATAGGGTCTTATCGAGCTACTCTTTATTTCATTGGATTACTCATGCTTATTCTAAAGCTTTGTTGTTTTTAGGATCTGGGTCCATTCATTATTCACTCAATGGAATCAACCCGTATGATGTCAGCTGCTTTGGGTATAGGGTCTTATCGAGCTAATCTTTATTTCATTGGATTACTCATGCTTATTCTAAAGCTTTGTTGTTTTTAGGATTTTGGTCCATTCATTATTCAATCAATGGAATCGGTTGTTGGATATTCTCCAAATAAAAGTCAGAATATGGTTCTTATGGGGTTTAACCATGTGCCAATTACAAAAAATGTTTTTTGATTAGGTACCGTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAAATGAAATTCTTAATGATAATTGGTTGTATTCACTCATTTTCGCAATGATAGCCTATTCCATATTCCACAACAGGATTAACAACGTTTTATATGTTTCCTATCTACTTATTGACTTTTGA

mRNA sequence

ATGGTAGAGAAGAAAAAAGGCGCACGGACCGTACTTGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCCCGTCTTTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACATAGTCAAAGTACGGTTGAGCAATCGACATGATATATTTTCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGATGTAGAGTGAAAGATTCGCCAGGAGTGGGACTTCTACTTTCTTTTTTCGAACGCAACCAAAACCCTTCGACGGTTTTGGTTCACTCCACCTACTCCTGCTGCATCAAATGCTTGTCAAAAGGTACAGTTGCTAAATCCGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCGATTTTGGCTCTTATACATGCTGCTACGATGGTAGGGGAAGTTTTCTTGTTGCTCGGCTTCTTCCGCTTTTTTATAGTAACACCTTACATTATGAATCTAATAGATTTTGGTCCATTCATTATTCAATCAATGGAATCGGTTGTTGGATATTCTCCAAATAAAAGTCAGAATATGGTTCTTATGGGGTTTAACCATGTGCCAATTACAAAAAATGTACCGTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAAATGAAATTCTTAATGATAATTGGTTGTATTCACTCATTTTCGCAATGATAGCCTATTCCATATTCCACAACAGGATTAACAACGTTTTATATGTTTCCTATCTACTTATTGACTTTTGA

Coding sequence (CDS)

ATGGTAGAGAAGAAAAAAGGCGCACGGACCGTACTTGAGCTTCGGATCAATGTCCCCAGAAGCAAGGAGTACGCCCCCGTCTTTCAACGAGAACACCGAAAAAACCTAATTCAGCTCCACATAGTCAAAGTACGGTTGAGCAATCGACATGATATATTTTCTCACATTCCGGGCGAAGGTCATAATTTGCAGGAACATTCTATGGTCTTAATAAGAGGATGTAGAGTGAAAGATTCGCCAGGAGTGGGACTTCTACTTTCTTTTTTCGAACGCAACCAAAACCCTTCGACGGTTTTGGTTCACTCCACCTACTCCTGCTGCATCAAATGCTTGTCAAAAGGTACAGTTGCTAAATCCGCTCAATTTCCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCGATTTTGGCTCTTATACATGCTGCTACGATGGTAGGGGAAGTTTTCTTGTTGCTCGGCTTCTTCCGCTTTTTTATAGTAACACCTTACATTATGAATCTAATAGATTTTGGTCCATTCATTATTCAATCAATGGAATCGGTTGTTGGATATTCTCCAAATAAAAGTCAGAATATGGTTCTTATGGGGTTTAACCATGTGCCAATTACAAAAAATGTACCGTTTCTCTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAAATGAAATTCTTAATGATAATTGGTTGTATTCACTCATTTTCGCAATGATAGCCTATTCCATATTCCACAACAGGATTAACAACGTTTTATATGTTTCCTATCTACTTATTGACTTTTGA

Protein sequence

MVEKKKGARTVLELRINVPRSKEYAPVFQREHRKNLIQLHIVKVRLSNRHDIFSHIPGEGHNLQEHSMVLIRGCRVKDSPGVGLLLSFFERNQNPSTVLVHSTYSCCIKCLSKGTVAKSAQFPLHVWLPDAMEGPTPILALIHAATMVGEVFLLLGFFRFFIVTPYIMNLIDFGPFIIQSMESVVGYSPNKSQNMVLMGFNHVPITKNVPFLSLCGIPPLACFWSKNEILNDNWLYSLIFAMIAYSIFHNRINNVLYVSYLLIDF
Homology
[Close]
BLAST of CmaCh05G008780 vs. Swiss-Prot
Match: NU5C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=ndhF PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.7e-23
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMG--FNHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SMESVVGYSP+KSQNMVLMG    HVPITKN   +  LSLCG+PPLACFWSK+EILN
Sbjct: 363 IIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGVPPLACFWSKDEILN 422

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IA S
Sbjct: 423 DSWLYSPIFAIIACS 437

[Close]
BLAST of CmaCh05G008780 vs. Swiss-Prot
Match: NU5C_VITVI (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vitis vinifera GN=ndhF PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMG--FNHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSP+KSQNMVLMG    HVPITKN   +  LSLCGIPPLACFWSK+EILN
Sbjct: 365 IIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILN 424

Query: 237 DNWLYSLIFAMIA 245
           D+WLYS IFA+IA
Sbjct: 425 DSWLYSPIFAIIA 437

[Close]
BLAST of CmaCh05G008780 vs. Swiss-Prot
Match: NU5C_OENPA (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera parviflora GN=ndhF PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMGF--NHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SMES+VGYSP+KSQNMVLMG    HVPITK    V  LSLCGIPPLACFWSK+EILN
Sbjct: 364 IIHSMESIVGYSPDKSQNMVLMGGLKKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILN 423

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IA S
Sbjct: 424 DSWLYSPIFAIIACS 438

[Close]
BLAST of CmaCh05G008780 vs. Swiss-Prot
Match: NU5C_OENGL (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera glazioviana GN=ndhF PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMGF--NHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SMES+VGYSP+KSQNMVLMG    HVPITK    V  LSLCGIPPLACFWSK+EILN
Sbjct: 364 IIHSMESIVGYSPDKSQNMVLMGGLKKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILN 423

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IA S
Sbjct: 424 DSWLYSPIFAIIACS 438

[Close]
BLAST of CmaCh05G008780 vs. Swiss-Prot
Match: NU5C_OENEH (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhF PE=3 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.4e-22
Identity = 57/75 (76.00%), Postives = 62/75 (82.67%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMGF--NHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SMES+VGYSP+KSQNMVLMG    HVPITK    V  LSLCGIPPLACFWSK+EILN
Sbjct: 364 IIHSMESIVGYSPDKSQNMVLMGGLKKHVPITKTAFLVGTLSLCGIPPLACFWSKDEILN 423

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IA S
Sbjct: 424 DSWLYSPIFAIIACS 438

[Close]
BLAST of CmaCh05G008780 vs. TrEMBL
Match: Q45Y50_BACMR (NADH dehydrogenase subunit F (Fragment) OS=Backhousia myrtifolia GN=ndhF PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMGF--NHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSP+KSQNMVLMG    HVPITKN   V  LSLCGIPPLACFWSK+EILN
Sbjct: 122 IIHSMEAIVGYSPDKSQNMVLMGGLKKHVPITKNAFLVGTLSLCGIPPLACFWSKDEILN 181

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IAYS
Sbjct: 182 DSWLYSPIFAIIAYS 196

[Close]
BLAST of CmaCh05G008780 vs. TrEMBL
Match: Q6RGZ9_BACMR (NADH dehydrogenase subunit F (Fragment) OS=Backhousia myrtifolia GN=ndhF PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMGF--NHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSP+KSQNMVLMG    HVPITKN   V  LSLCGIPPLACFWSK+EILN
Sbjct: 12  IIHSMEAIVGYSPDKSQNMVLMGGLKKHVPITKNAFLVGTLSLCGIPPLACFWSKDEILN 71

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IAYS
Sbjct: 72  DSWLYSPIFAIIAYS 86

[Close]
BLAST of CmaCh05G008780 vs. TrEMBL
Match: Q6RGZ0_BACSM (NADH dehydrogenase subunit F (Fragment) OS=Backhousia subargentea GN=ndhF PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 6.2e-22
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMGF--NHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSP+KSQNMVLMG    HVPITKN   V  LSLCGIPPLACFWSK+EILN
Sbjct: 22  IIHSMEAIVGYSPDKSQNMVLMGGLKKHVPITKNAFLVGTLSLCGIPPLACFWSKDEILN 81

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IAYS
Sbjct: 82  DSWLYSPIFAIIAYS 96

[Close]
BLAST of CmaCh05G008780 vs. TrEMBL
Match: A6YA79_9MAGN (NADH-plastoquinone oxidoreductase subunit 5 (Fragment) OS=Aphanopetalum resinosum GN=ndhF PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMG--FNHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSPNKSQNMVLMG    HVPITK    +  LSLCGIPPLACFWSK+EILN
Sbjct: 354 IIHSMEAIVGYSPNKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILN 413

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IAYS
Sbjct: 414 DSWLYSPIFAIIAYS 428

[Close]
BLAST of CmaCh05G008780 vs. TrEMBL
Match: Q85GB7_9DIPS (NADH dehydrogenase subunit F (Fragment) OS=Cryptothladia chlorantha GN=ndhF PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.4e-21
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMG--FNHVPITKNVPFL---SLCGIPPLACFWSKNEILN 236
           II SME++VGYSPNKSQNMVLMG    HVPITK   FL   SLCGIPPLACFWSK+EILN
Sbjct: 196 IIHSMETIVGYSPNKSQNMVLMGGLTKHVPITKTAFFLGTLSLCGIPPLACFWSKDEILN 255

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IA+S
Sbjct: 256 DSWLYSPIFAIIAWS 270

[Close]
BLAST of CmaCh05G008780 vs. TAIR10
Match: ATCG01010.1 (ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-21
Identity = 52/75 (69.33%), Postives = 61/75 (81.33%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMG--FNHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSP+KSQNM+LMG    HVPITK    +  LSLCGIPPLACFWSK+EILN
Sbjct: 363 IIHSMEAIVGYSPDKSQNMILMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSKDEILN 422

Query: 237 DNWLYSLIFAMIAYS 247
           D+ L+S IFA+IA S
Sbjct: 423 DSLLFSPIFAIIACS 437

[Close]
BLAST of CmaCh05G008780 vs. TAIR10
Match: AT2G07675.1 (AT2G07675.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1 

Query: 41 IVKVRLSNRHDIFSHIPGEGHNLQEHSMVLIRGCRVKDSPGV 83
          I KVRLSNRHDIF+HIPGEGHN QEHS VLIRG RVKDSPGV
Sbjct: 52 IAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGV 93

[Close]
BLAST of CmaCh05G008780 vs. TAIR10
Match: ATMG00980.1 (ATMG00980.1 Ribosomal protein S12/S23 family protein)

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-15
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1 

Query: 41 IVKVRLSNRHDIFSHIPGEGHNLQEHSMVLIRGCRVKDSPGV 83
          I KVRLSNRHDIF+HIPGEGHN QEHS VLIRG RVKDSPGV
Sbjct: 52 IAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGV 93

[Close]
BLAST of CmaCh05G008780 vs. TAIR10
Match: ATCG00065.1 (ATCG00065.1 ribosomal protein S12A)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-09
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1 

Query: 41 IVKVRLSNRHDIFSHIPGEGHNLQEHSMVLIRGCRVKDSPGV 83
          + +VRL++  +I ++IPG GHNLQEHS+VL+RG RVKD PGV
Sbjct: 52 VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGV 93

[Close]
BLAST of CmaCh05G008780 vs. TAIR10
Match: ATCG01230.1 (ATCG01230.1 ribosomal protein S12B)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-09
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1 

Query: 41 IVKVRLSNRHDIFSHIPGEGHNLQEHSMVLIRGCRVKDSPGV 83
          + +VRL++  +I ++IPG GHNLQEHS+VL+RG RVKD PGV
Sbjct: 52 VARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGV 93

[Close]
BLAST of CmaCh05G008780 vs. NCBI nr
Match: gi|71064187|gb|AAZ22562.1| (NADH dehydrogenase subunit F, partial (chloroplast) [Backhousia myrtifolia])

HSP 1 Score: 112.8 bits (281), Expect = 8.9e-22
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMGF--NHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSP+KSQNMVLMG    HVPITKN   V  LSLCGIPPLACFWSK+EILN
Sbjct: 122 IIHSMEAIVGYSPDKSQNMVLMGGLKKHVPITKNAFLVGTLSLCGIPPLACFWSKDEILN 181

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IAYS
Sbjct: 182 DSWLYSPIFAIIAYS 196

[Close]
BLAST of CmaCh05G008780 vs. NCBI nr
Match: gi|45593962|gb|AAS68378.1| (NADH dehydrogenase subunit F, partial (chloroplast) [Backhousia myrtifolia])

HSP 1 Score: 112.8 bits (281), Expect = 8.9e-22
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMGF--NHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSP+KSQNMVLMG    HVPITKN   V  LSLCGIPPLACFWSK+EILN
Sbjct: 12  IIHSMEAIVGYSPDKSQNMVLMGGLKKHVPITKNAFLVGTLSLCGIPPLACFWSKDEILN 71

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IAYS
Sbjct: 72  DSWLYSPIFAIIAYS 86

[Close]
BLAST of CmaCh05G008780 vs. NCBI nr
Match: gi|45593980|gb|AAS68387.1| (NADH dehydrogenase subunit F, partial (chloroplast) [Backhousia subargentea])

HSP 1 Score: 112.8 bits (281), Expect = 8.9e-22
Identity = 58/75 (77.33%), Postives = 64/75 (85.33%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMGF--NHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSP+KSQNMVLMG    HVPITKN   V  LSLCGIPPLACFWSK+EILN
Sbjct: 22  IIHSMEAIVGYSPDKSQNMVLMGGLKKHVPITKNAFLVGTLSLCGIPPLACFWSKDEILN 81

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IAYS
Sbjct: 82  DSWLYSPIFAIIAYS 96

[Close]
BLAST of CmaCh05G008780 vs. NCBI nr
Match: gi|146261330|gb|ABQ14939.1| (NADH-plastoquinone oxidoreductase subunit 5 [Aphanopetalum resinosum])

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 57/75 (76.00%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMG--FNHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSPNKSQNMVLMG    HVPITK    +  LSLCGIPPLACFWSK+EILN
Sbjct: 354 IIHSMEAIVGYSPNKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILN 413

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IAYS
Sbjct: 414 DSWLYSPIFAIIAYS 428

[Close]
BLAST of CmaCh05G008780 vs. NCBI nr
Match: gi|45593960|gb|AAS68377.1| (NADH dehydrogenase subunit F, partial (chloroplast) [Backhousia citriodora])

HSP 1 Score: 111.7 bits (278), Expect = 2.0e-21
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 1 

Query: 177 IIQSMESVVGYSPNKSQNMVLMGF--NHVPITKN---VPFLSLCGIPPLACFWSKNEILN 236
           II SME++VGYSP KSQNMVLMG    HVPITKN   V  LSLCGIPPLACFWSK+EILN
Sbjct: 21  IIHSMEAIVGYSPAKSQNMVLMGGLKKHVPITKNAFLVGTLSLCGIPPLACFWSKDEILN 80

Query: 237 DNWLYSLIFAMIAYS 247
           D+WLYS IFA+IAYS
Sbjct: 81  DSWLYSPIFAIIAYS 95

The following BLAST results are available for this feature:
BLAST of CmaCh05G008780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NU5C_CUCSA4.7e-2376.00NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus GN=nd... [more]
NU5C_VITVI1.4e-2275.34NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vitis vinifera GN=ndh... [more]
NU5C_OENPA1.4e-2276.00NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera parviflora ... [more]
NU5C_OENGL1.4e-2276.00NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera glazioviana... [more]
NU5C_OENEH1.4e-2276.00NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera elata subsp... [more]
BLAST of CmaCh05G008780 vs. TrEMBL
Match NameE-valueIdentityDescription
Q45Y50_BACMR6.2e-2277.33NADH dehydrogenase subunit F (Fragment) OS=Backhousia myrtifolia GN=ndhF PE=4 SV... [more]
Q6RGZ9_BACMR6.2e-2277.33NADH dehydrogenase subunit F (Fragment) OS=Backhousia myrtifolia GN=ndhF PE=4 SV... [more]
Q6RGZ0_BACSM6.2e-2277.33NADH dehydrogenase subunit F (Fragment) OS=Backhousia subargentea GN=ndhF PE=4 S... [more]
A6YA79_9MAGN1.4e-2176.00NADH-plastoquinone oxidoreductase subunit 5 (Fragment) OS=Aphanopetalum resinosu... [more]
Q85GB7_9DIPS1.4e-2176.00NADH dehydrogenase subunit F (Fragment) OS=Cryptothladia chlorantha GN=ndhF PE=4... [more]
BLAST of CmaCh05G008780 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG01010.12.1e-2169.33ATCG01010.1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein[more]
AT2G07675.12.3e-1588.10 Ribosomal protein S12/S23 family protein[more]
ATMG00980.12.3e-1588.10ATMG00980.1 Ribosomal protein S12/S23 family protein[more]
ATCG00065.13.2e-0961.90ATCG00065.1 ribosomal protein S12A[more]
ATCG01230.13.2e-0961.90ATCG01230.1 ribosomal protein S12B[more]
BLAST of CmaCh05G008780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|71064187|gb|AAZ22562.1|8.9e-2277.33NADH dehydrogenase subunit F, partial (chloroplast) [Backhousia myrtifolia][more]
gi|45593962|gb|AAS68378.1|8.9e-2277.33NADH dehydrogenase subunit F, partial (chloroplast) [Backhousia myrtifolia][more]
gi|45593980|gb|AAS68387.1|8.9e-2277.33NADH dehydrogenase subunit F, partial (chloroplast) [Backhousia subargentea][more]
gi|146261330|gb|ABQ14939.1|2.0e-2176.00NADH-plastoquinone oxidoreductase subunit 5 [Aphanopetalum resinosum][more]
gi|45593960|gb|AAS68377.1|2.0e-2177.33NADH dehydrogenase subunit F, partial (chloroplast) [Backhousia citriodora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001750ND/Mrp_mem
IPR006032Ribosomal_S12/S23
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006814 sodium ion transport
biological_process GO:0006412 translation
biological_process GO:0006744 ubiquinone biosynthetic process
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G008780.1CmaCh05G008780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001750NADH:quinone oxidoreductase/Mrp antiporter, membrane subunitPFAMPF00361Proton_antipo_Mcoord: 187..246
score: 2.4E-6coord: 99..170
score: 2.3
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 47..66
score: 3.9E-16coord: 31..46
score: 3.9E-16coord: 66..83
score: 3.9
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 41..82
score: 2.1
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 40..82
score: 2.4
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 40..83
score: 2.4
NoneNo IPR availablePANTHERPTHR22773NADH DEHYDROGENASEcoord: 114..246
score: 2.4
NoneNo IPR availablePANTHERPTHR22773:SF82NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 5, CHLOROPLASTICcoord: 114..246
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh05G008780Cucumber (Gy14) v2cgybcmaB693
CmaCh05G008780Melon (DHL92) v3.6.1cmamedB805
CmaCh05G008780Cucumber (Chinese Long) v3cmacucB0947
CmaCh05G008780Watermelon (97103) v2cmawmbB804
CmaCh05G008780Wax gourdcmawgoB0931
CmaCh05G008780Cucumber (Gy14) v1cgycmaB0016
CmaCh05G008780Cucurbita moschata (Rifu)cmacmoB771
CmaCh05G008780Cucurbita moschata (Rifu)cmacmoB787
CmaCh05G008780Wild cucumber (PI 183967)cmacpiB813
CmaCh05G008780Cucumber (Chinese Long) v2cmacuB802