CmaCh05G006560 (gene) Cucurbita maxima (Rimu)

NameCmaCh05G006560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionHistone deacetylase 18-like protein
LocationCma_Chr05 : 3353968 .. 3354788 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTTGCCGTCGTTCTCATTTCTCAACTACCGTGAGCTGACCAACAAGCTCCCACGCCACCTCCTCATCCTTCTCCTTCTTTTTAACTTCTTCATTTCCCATCTCCTTCTCTCCCAAATTCCACAGTTCCATAAACACTCCAACAGACAAATTCATCAAAAAAAAAATGGCTATGTCCACCACCTGTTGCCTGAACAACCTCAATCCGCCGCCGCGGCTGCTCCCAAAGTCCACCACACCCACCACCAATCAACTCCTTCCACGGTAATTACTTACCACACTCCGATCATTCATTTTGGTTCTGTAATTGAAGAAATCGATCTGCCTTCGAATTTACAAAACCCAGGGATTAAATTTAAACATCTGTGTGGAATTGGGCAGGAATGGAAATGGAGAACGGTGGCAAAAGCGGTGCGTTTTGGGGGTGGTCGGAGTGGCAATGGCTCTGCAAATGGTCGGAGAAAGTGGTGGCGTAGAAATGGGAGATGTCAATTTTGTTGATTCCAGAAAATGGAGCGAAGAAAGAATGTGCCCTCAGTGGCGGCTCAATTCCCTCGAAACCATCGTGCCGGAGAATCTTCCAAGGCCAGCCGCCCGCCGGAGATGGGAGCCCGCCGCCCTTCCTCGCACAGCGCCTCAACTCCGAACCATACATACATCTTCCCTCTCTACTCGCTGCTTCTCTATGTAATTTCCAAATCCCTAAATATCAATTTACCAATTCTTCAATACCATTTTACAATATTACAATATTACCATTTCAATGTAATTTAATATTCTTAATTTTTCTAATAATCTTATAAATATATTTAGATTATGAC

mRNA sequence

CCCTTGCCGTCGTTCTCATTTCTCAACTACCGTGAGCTGACCAACAAGCTCCCACGCCACCTCCTCATCCTTCTCCTTCTTTTTAACTTCTTCATTTCCCATCTCCTTCTCTCCCAAATTCCACAGTTCCATAAACACTCCAACAGACAAATTCATCAAAAAAAAAATGGCTATGTCCACCACCTGTTGCCTGAACAACCTCAATCCGCCGCCGCGGCTGCTCCCAAAGTCCACCACACCCACCACCAATCAACTCCTTCCACGGAATGGAAATGGAGAACGGTGGCAAAAGCGGTGCGTTTTGGGGGTGGTCGGAGTGGCAATGGCTCTGCAAATGGTCGGAGAAAGTGGTGGCGTAGAAATGGGAGATGTCAATTTTGTTGATTCCAGAAAATGGAGCGAAGAAAGAATGTGCCCTCAGTGGCGGCTCAATTCCCTCGAAACCATCGTGCCGGAGAATCTTCCAAGGCCAGCCGCCCGCCGGAGATGGGAGCCCGCCGCCCTTCCTCGCACAGCGCCTCAACTCCGAACCATACATACATCTTCCCTCTCTACTCGCTGCTTCTCTATGTAATTTCCAAATCCCTAAATATCAATTTACCAATTCTTCAATACCATTTTACAATATTACAATATTACCATTTCAATGTAATTTAATATTCTTAATTTTTCTAATAATCTTATAAATATATTTAGATTATGAC

Coding sequence (CDS)

ATGGCTATGTCCACCACCTGTTGCCTGAACAACCTCAATCCGCCGCCGCGGCTGCTCCCAAAGTCCACCACACCCACCACCAATCAACTCCTTCCACGGAATGGAAATGGAGAACGGTGGCAAAAGCGGTGCGTTTTGGGGGTGGTCGGAGTGGCAATGGCTCTGCAAATGGTCGGAGAAAGTGGTGGCGTAGAAATGGGAGATGTCAATTTTGTTGATTCCAGAAAATGGAGCGAAGAAAGAATGTGCCCTCAGTGGCGGCTCAATTCCCTCGAAACCATCGTGCCGGAGAATCTTCCAAGGCCAGCCGCCCGCCGGAGATGGGAGCCCGCCGCCCTTCCTCGCACAGCGCCTCAACTCCGAACCATACATACATCTTCCCTCTCTACTCGCTGCTTCTCTATGTAA

Protein sequence

MAMSTTCCLNNLNPPPRLLPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAMALQMVGESGGVEMGDVNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRTAPQLRTIHTSSLSTRCFSM
BLAST of CmaCh05G006560 vs. TrEMBL
Match: A0A0A0LLU6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379360 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.5e-53
Identity = 107/137 (78.10%), Postives = 115/137 (83.94%), Query Frame = 1

Query: 1   MAMSTTCCLNNLNPPPRLLPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAMALQMVGE 60
           M M+TTCCLNNLNPPPRL   ST  T   LLP NGNGE W+KRCVLG  GV  AL M GE
Sbjct: 1   MGMATTCCLNNLNPPPRLHQNSTASTNAPLLPPNGNGEWWRKRCVLGAAGVMTALVMSGE 60

Query: 61  SGGVEMGDVNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRT--AP 120
           S GVEM ++NFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRW+PAALP+T  AP
Sbjct: 61  SSGVEMENLNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWDPAALPQTRPAP 120

Query: 121 QLRTIHTSSLSTRCFSM 136
           QLRT +T+SLSTRCFSM
Sbjct: 121 QLRTTNTTSLSTRCFSM 137

BLAST of CmaCh05G006560 vs. TrEMBL
Match: A0A061GQG6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_038341 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.3e-19
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1

Query: 1   MAMSTTCCLNNLNPPPRL---LPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAMALQM 60
           MA+ST CCLN   P P     +  S    +    PR+   ++W+K+CVLGV  + + LQ+
Sbjct: 1   MAISTRCCLNVSPPTPTPGFDMSSSNKKASQVAWPRD---DKWRKQCVLGVTCIVIGLQV 60

Query: 61  --VGESGGV--EMGDVNFVDSR--KWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPA 120
             + ++  +  E+      +S+  +WS++R+CP W  NSLETIVPENLPRP+A RRWE  
Sbjct: 61  GNITDNSAIAEEVSSATESNSKVARWSDKRVCPPWNANSLETIVPENLPRPSAHRRWEAI 120

Query: 121 ALPRTAPQLRTIHTSSLSTRCFSM 136
              + AP +R   T+   T CFSM
Sbjct: 121 GFSKNAPAVRVKVTTKTRTNCFSM 141

BLAST of CmaCh05G006560 vs. TrEMBL
Match: B9RKU9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1053560 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.5e-19
Identity = 62/155 (40.00%), Postives = 86/155 (55.48%), Query Frame = 1

Query: 1   MAMSTTCCLNNLNPPPRL---LPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAMALQM 60
           MA++T+CCLN   PPP     LP S++ T           E+W+ +CVLG+  + + L+M
Sbjct: 1   MAITTSCCLNMNIPPPTSASSLPSSSSTTKPTAQASWFKNEKWRSQCVLGMACMIIGLEM 60

Query: 61  ---VGESGGVEMGDVNFVD---------SRKWSEERMCPQWRLNSLETIVPENLPRPAAR 120
              V E   + M   N            +R+WS++RMCP WRLNSLETIVPENLPRP+AR
Sbjct: 61  DNLVNEETNLAMAAENSSSVVELKVKPKTRRWSDKRMCPPWRLNSLETIVPENLPRPSAR 120

Query: 121 RRWEPAAL----PRTAPQLR-TIHTSSLSTRCFSM 136
           RRWE        P  AP  + ++ +  +   CF+M
Sbjct: 121 RRWEATGYSKIDPAPAPARKVSVKSIMIMDNCFTM 155

BLAST of CmaCh05G006560 vs. TrEMBL
Match: A5BJF3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004448 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.7e-18
Identity = 58/145 (40.00%), Postives = 81/145 (55.86%), Query Frame = 1

Query: 1   MAMSTTCCLNNLNPPPRLLPKST---TPTTNQLLPRNGNGERWQKRCVLGVVGVAMALQM 60
           MA S  CCLN   PP    P+S+   T T     PR  N  +   +C++G+  + ++L+M
Sbjct: 1   MAFSAGCCLNLSPPPSGSSPRSSRSSTKTDQVSWPRKENSLK--SKCLVGLTCMIISLEM 60

Query: 61  VGESGGVEMG---DVNFVDSRK----WSEERMCPQWRLNSLETIVPENLPRPAARRRWEP 120
                G  +    D+  +  RK    WS++RMCP W+LNSLETIVPENLPRP+ RRRWE 
Sbjct: 61  SNLMSGEGLAIAQDLQLIGERKEVTRWSDKRMCPPWQLNSLETIVPENLPRPSTRRRWES 120

Query: 121 AALPRTAPQLRTIHTSSLSTRCFSM 136
                TAP ++ +  +   + CFSM
Sbjct: 121 VGHSTTAPAVKILFRAHTKSDCFSM 143

BLAST of CmaCh05G006560 vs. TrEMBL
Match: A0A068U8M8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019574001 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 56/133 (42.11%), Postives = 76/133 (57.14%), Query Frame = 1

Query: 1   MAMSTTCCLNNLNPPPRLLPKSTTPTTNQLL----PRNGNGERWQKRCVLGV----VGVA 60
           MA+S +CCLN L PPP  +  S  P  ++      P+N     W+++C+LGV    VG+ 
Sbjct: 1   MALSISCCLN-LPPPPSCIATSDQPLASKASHLAWPKNPKERSWKRKCLLGVATLLVGLE 60

Query: 61  MALQMVGESGGV---------EMGDVNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPA 117
           M+  +VGE             EM   + +  ++WS+ R CP W +NSLETIVPENLPRP+
Sbjct: 61  MSNLVVGEQEMALAWDLQQQEEMASKSVIKVQRWSDRRTCPSWHVNSLETIVPENLPRPS 120

BLAST of CmaCh05G006560 vs. TAIR10
Match: AT2G25625.1 (AT2G25625.1 unknown protein)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-11
Identity = 54/156 (34.62%), Postives = 77/156 (49.36%), Query Frame = 1

Query: 1   MAMSTTCCLN--NLNPPPRLLPKSTTPTTNQLLPRNGNGERWQKRCVLG-VVGVAMALQM 60
           MA   +CCLN   L+        S   TT+++  R    E   ++     V+GVA  + +
Sbjct: 1   MAGRISCCLNLPPLDSNSAQSLASLLKTTSKISCRRTENETEPRKNKCSFVLGVAATVVI 60

Query: 61  VGESGGVEMGDVNFVDS-----------------RKWSEERMCPQWRLNSLETIVPENLP 120
               GG+++ DV  V++                 R+WS++R CP W  NSLETIVPENLP
Sbjct: 61  ----GGIQINDVASVEAAVVKSPVEEMAAGVVPPRRWSDKRTCPPWLENSLETIVPENLP 120

Query: 121 RPAARRRWEPAALPR-TAPQLRTIHTSSLSTRCFSM 136
           RP+A RR E A L +  AP +  + T      CFS+
Sbjct: 121 RPSAHRRLELAGLAKGDAPPVGVVMTRVNRGGCFSV 152

BLAST of CmaCh05G006560 vs. NCBI nr
Match: gi|700207786|gb|KGN62905.1| (hypothetical protein Csa_2G379360 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 6.5e-53
Identity = 107/137 (78.10%), Postives = 115/137 (83.94%), Query Frame = 1

Query: 1   MAMSTTCCLNNLNPPPRLLPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAMALQMVGE 60
           M M+TTCCLNNLNPPPRL   ST  T   LLP NGNGE W+KRCVLG  GV  AL M GE
Sbjct: 1   MGMATTCCLNNLNPPPRLHQNSTASTNAPLLPPNGNGEWWRKRCVLGAAGVMTALVMSGE 60

Query: 61  SGGVEMGDVNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRT--AP 120
           S GVEM ++NFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRW+PAALP+T  AP
Sbjct: 61  SSGVEMENLNFVDSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWDPAALPQTRPAP 120

Query: 121 QLRTIHTSSLSTRCFSM 136
           QLRT +T+SLSTRCFSM
Sbjct: 121 QLRTTNTTSLSTRCFSM 137

BLAST of CmaCh05G006560 vs. NCBI nr
Match: gi|659088755|ref|XP_008445145.1| (PREDICTED: uncharacterized protein LOC103488267 [Cucumis melo])

HSP 1 Score: 211.5 bits (537), Expect = 9.4e-52
Identity = 110/140 (78.57%), Postives = 120/140 (85.71%), Query Frame = 1

Query: 1   MAMSTTCCLNNLNPPPRLLPKSTTPTTNQLLPRNGNGERW-QKRCVLGVVGVAMALQMVG 60
           MAM+TTCC+NNLNPPPRL   ST  T N LLP NG+G++W +KRCVLGV GV  AL M G
Sbjct: 1   MAMATTCCVNNLNPPPRLYQNSTASTNNPLLPLNGSGDQWWRKRCVLGVAGVMTALIMSG 60

Query: 61  ESGGVEMGDVN-FVD-SRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPAALPRT- 120
           ESGGVEMG+VN FVD SRKWSEERMCPQWRLNSLETIVPENLPRPAARRRW+PAALP T 
Sbjct: 61  ESGGVEMGNVNSFVDNSRKWSEERMCPQWRLNSLETIVPENLPRPAARRRWDPAALPHTA 120

Query: 121 -APQLRTIHTSSLSTRCFSM 136
            APQLRT +T+SLSTRCFSM
Sbjct: 121 PAPQLRTTNTASLSTRCFSM 140

BLAST of CmaCh05G006560 vs. NCBI nr
Match: gi|590579425|ref|XP_007013783.1| (Uncharacterized protein TCM_038341 [Theobroma cacao])

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1

Query: 1   MAMSTTCCLNNLNPPPRL---LPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAMALQM 60
           MA+ST CCLN   P P     +  S    +    PR+   ++W+K+CVLGV  + + LQ+
Sbjct: 1   MAISTRCCLNVSPPTPTPGFDMSSSNKKASQVAWPRD---DKWRKQCVLGVTCIVIGLQV 60

Query: 61  --VGESGGV--EMGDVNFVDSR--KWSEERMCPQWRLNSLETIVPENLPRPAARRRWEPA 120
             + ++  +  E+      +S+  +WS++R+CP W  NSLETIVPENLPRP+A RRWE  
Sbjct: 61  GNITDNSAIAEEVSSATESNSKVARWSDKRVCPPWNANSLETIVPENLPRPSAHRRWEAI 120

Query: 121 ALPRTAPQLRTIHTSSLSTRCFSM 136
              + AP +R   T+   T CFSM
Sbjct: 121 GFSKNAPAVRVKVTTKTRTNCFSM 141

BLAST of CmaCh05G006560 vs. NCBI nr
Match: gi|255546567|ref|XP_002514343.1| (PREDICTED: uncharacterized protein LOC8284834 [Ricinus communis])

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-18
Identity = 62/155 (40.00%), Postives = 86/155 (55.48%), Query Frame = 1

Query: 1   MAMSTTCCLNNLNPPPRL---LPKSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAMALQM 60
           MA++T+CCLN   PPP     LP S++ T           E+W+ +CVLG+  + + L+M
Sbjct: 1   MAITTSCCLNMNIPPPTSASSLPSSSSTTKPTAQASWFKNEKWRSQCVLGMACMIIGLEM 60

Query: 61  ---VGESGGVEMGDVNFVD---------SRKWSEERMCPQWRLNSLETIVPENLPRPAAR 120
              V E   + M   N            +R+WS++RMCP WRLNSLETIVPENLPRP+AR
Sbjct: 61  DNLVNEETNLAMAAENSSSVVELKVKPKTRRWSDKRMCPPWRLNSLETIVPENLPRPSAR 120

Query: 121 RRWEPAAL----PRTAPQLR-TIHTSSLSTRCFSM 136
           RRWE        P  AP  + ++ +  +   CF+M
Sbjct: 121 RRWEATGYSKIDPAPAPARKVSVKSIMIMDNCFTM 155

BLAST of CmaCh05G006560 vs. NCBI nr
Match: gi|225430167|ref|XP_002284793.1| (PREDICTED: uncharacterized protein LOC100261242 [Vitis vinifera])

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-18
Identity = 59/145 (40.69%), Postives = 81/145 (55.86%), Query Frame = 1

Query: 1   MAMSTTCCLNNLNPPPRLLP---KSTTPTTNQLLPRNGNGERWQKRCVLGVVGVAMALQM 60
           MA S  CCLN   PP    P   +S+T T     PR  N  +   +CV+G+  + ++L+M
Sbjct: 1   MAFSAGCCLNLSPPPSGSSPSSSRSSTKTDQVSWPRKENSLK--SKCVVGLTCMIISLEM 60

Query: 61  VGESGGVEMG---DVNFVDSRK----WSEERMCPQWRLNSLETIVPENLPRPAARRRWEP 120
                G  +    D+  +  RK    WS++RMCP W+LNSLETIVPENLPRP+ RRRWE 
Sbjct: 61  SNLMSGEGLAIAQDLQLIGERKEVTRWSDKRMCPPWQLNSLETIVPENLPRPSTRRRWES 120

Query: 121 AALPRTAPQLRTIHTSSLSTRCFSM 136
                TAP ++ +  +   + CFSM
Sbjct: 121 VGHSTTAPAVKILFRAHTKSDCFSM 143

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LLU6_CUCSA4.5e-5378.10Uncharacterized protein OS=Cucumis sativus GN=Csa_2G379360 PE=4 SV=1[more]
A0A061GQG6_THECC7.3e-1940.28Uncharacterized protein OS=Theobroma cacao GN=TCM_038341 PE=4 SV=1[more]
B9RKU9_RICCO9.5e-1940.00Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1053560 PE=4 SV=1[more]
A5BJF3_VITVI4.7e-1840.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004448 PE=4 SV=1[more]
A0A068U8M8_COFCA1.1e-1742.11Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019574001 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G25625.11.3e-1134.62 unknown protein[more]
Match NameE-valueIdentityDescription
gi|700207786|gb|KGN62905.1|6.5e-5378.10hypothetical protein Csa_2G379360 [Cucumis sativus][more]
gi|659088755|ref|XP_008445145.1|9.4e-5278.57PREDICTED: uncharacterized protein LOC103488267 [Cucumis melo][more]
gi|590579425|ref|XP_007013783.1|1.0e-1840.28Uncharacterized protein TCM_038341 [Theobroma cacao][more]
gi|255546567|ref|XP_002514343.1|1.4e-1840.00PREDICTED: uncharacterized protein LOC8284834 [Ricinus communis][more]
gi|225430167|ref|XP_002284793.1|3.0e-1840.69PREDICTED: uncharacterized protein LOC100261242 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G006560.1CmaCh05G006560.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37210FAMILY NOT NAMEDcoord: 2..135
score: 1.7
NoneNo IPR availablePANTHERPTHR37210:SF2EXPRESSED PROTEINcoord: 2..135
score: 1.7