CmaCh05G004830 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh05G004830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Descriptionconserved peptide upstream open reading frame 19
LocationCma_Chr05 : 2274512 .. 2276225 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGCTTCTCCCTTTCCCTCAAGTCATACCTTAATTCCAAATTACAACAATGCCGCCGATATTTTCATATTTCCATATATACCCTTAGGGTTGTGCTACAATTACCATATTGGACAAAGGCATATTTTTCAAATTTATGTCGTGACTCGCAGCGTGGCAGAATATTAGAGACTGGAGAAAAGGCGATAGCAATAGCGACTGTGCAGGACAAATTCGTAAATAAAACGAAACTTTCGGGCAATTCATTGCCCCTCAGGTCGGTTAGTGCAAATATTTTTAATTTTTAAATTGGGTTTCAAAAGTTTGCCCTAATTGGTGACGTGTAGGGTTTTCTTTCTACCATTCCTTTGAGCGTGTATAAAAGGCGTCCGTTCTACCCATCAAAATCCCATCGGCATCTTCGACACCGCGCGAACAAGAGCCAAAGCTTCAGGATCAGTTTCTTCTCGTACCTCGACCTCCCACCACTGTAAGGCAAGAATTTTCGTTGTTTTCTTGTTTAAACAAACTTCACAACCTGTTCTTGTTGCTTTATCGGCCTTTGATTTTTAACTAATGTTTTCAATTCGTTGTTTTTGTTATTGTCGTAATCGATTATAAGTTATCCACGGTTCTTTTGTATCAAACATCTTCGATTTGACAAAATCTTCACGATCGGTATTTCGATTGTTGATTTTCGATGGAATTTAGTAAGTTTCTTGCCGCGTCGCTCAGATCTGTAGATTGACTTTTGTTTGTCGTTTGTCTGGTATATTTTTCTTAATTTTTTCCATTATTGGAATGAGAAATATGGTCGTCGCTTTAGATTGTGATTTATTCATGTAAAACTTCTGAGATCGATGATTGAATCTTATCTGTGAATTCGATATAGTATTCGTTCCATCTAGTATTTCCAATAGGCCTGGGATATTCGTTTTATTTTTTTGTGTTCAATTGTGTATTGTTTTTCTTACTTGTTTGTCATTTGAAAGCTTTCGATTATTTATTTTCTAGTTGTAAATGGTGGTAGAGTTTATATGTTGTTATGGTTTCGTGCATTTATCTAATACAAATCGTGGATGATGTTTCATGTGTCAAGTTATTAAAGCCTGATCCTTTGATTTATGTCGTCTTCAAAAACTCGTTCTATTTAATGTAAACATTGTTCAATCTTTCCTTTGCTTTTTGCTGGAATTAAATATCGGTCTATTGAGATTATGCAACTTGCTGTCATACGGTTCAGTTTTATATTTTAGAGGTAGGGACAACATTCGTGCGCGTAATTGGCACTTGTATGACGAAGTTTATTTTGACTGAAAACTCAAGTTCTGATGATCTCCTAATGAAATTTTGTTTGTTCTTCTAGATTTTAATTTCTCAAAGGTATTTTTCCCCCAACCTAACTCATAGGATAATCGTTCTTAATCCCCAGGAATTTGGCCATCTGGTCTGTTGCCTGTAGTTCAAAGTGGAGGGCGTTAAGTTTGAAACTCCTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGAACAGCTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGGTCATAGAAAAGTACGTGATCTTGGTTTCTCTTTTATGCGGCCTTTCCCAGCTGCTCAAAGAACGTTAGGACCTTTTGAAGATACTGCTACTGCTACCTATCTTTTCTAA

mRNA sequence

ATGGTTGCTTCTCCCTTTCCCTCAAGTCATACCTTAATTCCAAATTACAACAATGCCGCCGATATTTTCATATTTCCATATATACCCTTAGGGTTGTGCTACAATTACCATATTGGACAAAGGCATATTTTTCAAATTTATGTCCGTGGCAGAATATTAGAGACTGGAGAAAAGGCGATAGCAATAGCGACTGTGCAGGACAAATTCGTAAATAAAACGAAACTTTCGGGCAATTCATTGCCCCTCAGGTCGGCGTCCGTTCTACCCATCAAAATCCCATCGGCATCTTCGACACCGCGCGAACAAGAGCCAAAGCTTCAGGATCAGTTTCTTCTCGTACCTCGACCTCCCACCACTATTTTAATTTCTCAAAGGTATTTTTCCCCCAACCTAACTCATAGGATAATCGTTCTTAATCCCCAGGAATTTGGCCATCTGTTCAAAGTGGAGGGCGTTAAGTTTGAAACTCCTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGAACAGCTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGGTCATAGAAAAGTACGTGATCTTGGTTTCTCTTTTATGCGGCCTTTCCCAGCTGCTCAAAGAACGTTAGGACCTTTTGAAGATACTGCTACTGCTACCTATCTTTTCTAA

Coding sequence (CDS)

ATGGTTGCTTCTCCCTTTCCCTCAAGTCATACCTTAATTCCAAATTACAACAATGCCGCCGATATTTTCATATTTCCATATATACCCTTAGGGTTGTGCTACAATTACCATATTGGACAAAGGCATATTTTTCAAATTTATGTCCGTGGCAGAATATTAGAGACTGGAGAAAAGGCGATAGCAATAGCGACTGTGCAGGACAAATTCGTAAATAAAACGAAACTTTCGGGCAATTCATTGCCCCTCAGGTCGGCGTCCGTTCTACCCATCAAAATCCCATCGGCATCTTCGACACCGCGCGAACAAGAGCCAAAGCTTCAGGATCAGTTTCTTCTCGTACCTCGACCTCCCACCACTATTTTAATTTCTCAAAGGTATTTTTCCCCCAACCTAACTCATAGGATAATCGTTCTTAATCCCCAGGAATTTGGCCATCTGTTCAAAGTGGAGGGCGTTAAGTTTGAAACTCCTTTTATGTCTGAACGGGCCTCTCTCTTTTTGTCATCGATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAGAACAGCTGTGCTGAGACTATTGGCTGCATGCATCTTGAGTTGCTTGGAGGTCATAGAAAAGTACGTGATCTTGGTTTCTCTTTTATGCGGCCTTTCCCAGCTGCTCAAAGAACGTTAGGACCTTTTGAAGATACTGCTACTGCTACCTATCTTTTCTAA

Protein sequence

MVASPFPSSHTLIPNYNNAADIFIFPYIPLGLCYNYHIGQRHIFQIYVRGRILETGEKAIAIATVQDKFVNKTKLSGNSLPLRSASVLPIKIPSASSTPREQEPKLQDQFLLVPRPPTTILISQRYFSPNLTHRIIVLNPQEFGHLFKVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKKNSCAETIGCMHLELLGGHRKVRDLGFSFMRPFPAAQRTLGPFEDTATATYLF
Homology
[Close]
BLAST of CmaCh05G004830 vs. TrEMBL
Match: W9QZ52_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014936 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.2e-12
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 159 MSERASLFLSSIGLLGEYCPTSRKKN-SCAETIGCMHLELLGGHRKVRDLGFSFMRPFPA 218
           MSER + FLSSIGLLGEYCPTSRKK+ S A+ +GCMHL L+ G  K   LG+ FMRPFP 
Sbjct: 1   MSERVTHFLSSIGLLGEYCPTSRKKDGSTADKVGCMHLGLIEG-CKTHFLGYLFMRPFPV 60

[Close]
BLAST of CmaCh05G004830 vs. TrEMBL
Match: U5GET4_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s09260g PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 1 

Query: 146 LFKVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKK-NSCAETIGCMHLELLGGHRKV 205
           +F+V+ V+ E  FMS +A  FL  IGLLGEY P+ RKK    ++ +GCMHL    G+ + 
Sbjct: 42  IFRVKCVEVEVSFMSIQAISFLGEIGLLGEYTPSLRKKGRPLSDKVGCMHLGPFKGYPEF 101

Query: 206 RDLGFSFMRPFPAAQRTLGPFEDTA 230
              G S+++P+  A++    FE+++
Sbjct: 102 S--GCSWVQPYLIAEKQSSLFEESS 124

[Close]
BLAST of CmaCh05G004830 vs. NCBI nr
Match: gi|703095328|ref|XP_010095507.1| (hypothetical protein L484_014936 [Morus notabilis])

HSP 1 Score: 79.7 bits (195), Expect = 7.4e-12
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1 

Query: 159 MSERASLFLSSIGLLGEYCPTSRKKN-SCAETIGCMHLELLGGHRKVRDLGFSFMRPFPA 218
           MSER + FLSSIGLLGEYCPTSRKK+ S A+ +GCMHL L+ G  K   LG+ FMRPFP 
Sbjct: 1   MSERVTHFLSSIGLLGEYCPTSRKKDGSTADKVGCMHLGLIEG-CKTHFLGYLFMRPFPV 60

[Close]
BLAST of CmaCh05G004830 vs. NCBI nr
Match: gi|802634741|ref|XP_012078140.1| (PREDICTED: uncharacterized protein LOC105638868 [Jatropha curcas])

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 

Query: 159 MSERASLFLSSIGLLGEYCPTSRKKN-SCAETIGCMHLELLGGHRKVRDLGFSFMRP 215
           MSERASLFLSSIGLLGEYCPTSRKK+   +  +GCMHLEL  GH    ++G  FM+P
Sbjct: 1   MSERASLFLSSIGLLGEYCPTSRKKSRRSSAKVGCMHLELFEGH-STDNIGCQFMQP 56

[Close]
BLAST of CmaCh05G004830 vs. NCBI nr
Match: gi|720090348|ref|XP_010245067.1| (PREDICTED: uncharacterized protein LOC104588720 [Nelumbo nucifera])

HSP 1 Score: 73.2 bits (178), Expect = 6.9e-10
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1 

Query: 159 MSERASLFLSSIGLLGEYCPTSRKK-NSCAETIGCMHLELLGGHRKVRDLGFSFMRPFPA 218
           MSE ASL+L SIGLLGEYCPTSRKK    +ET+GCMHL  L      R  G S+M+PFP 
Sbjct: 1   MSESASLYLGSIGLLGEYCPTSRKKLRRTSETVGCMHLGPLQDSEHSR--GCSWMQPFPI 60

Query: 219 AQRTLGPFEDTATA 232
           A++    F+    A
Sbjct: 61  ARKQTLSFQGNILA 72

[Close]
BLAST of CmaCh05G004830 vs. NCBI nr
Match: gi|566165711|ref|XP_006384178.1| (hypothetical protein POPTR_0004s09260g, partial [Populus trichocarpa])

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 33/85 (38.82%), Postives = 53/85 (62.35%), Query Frame = 1 

Query: 146 LFKVEGVKFETPFMSERASLFLSSIGLLGEYCPTSRKK-NSCAETIGCMHLELLGGHRKV 205
           +F+V+ V+ E  FMS +A  FL  IGLLGEY P+ RKK    ++ +GCMHL    G+ + 
Sbjct: 42  IFRVKCVEVEVSFMSIQAISFLGEIGLLGEYTPSLRKKGRPLSDKVGCMHLGPFKGYPEF 101

Query: 206 RDLGFSFMRPFPAAQRTLGPFEDTA 230
              G S+++P+  A++    FE+++
Sbjct: 102 S--GCSWVQPYLIAEKQSSLFEESS 124

The following BLAST results are available for this feature:
BLAST of CmaCh05G004830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh05G004830 vs. TrEMBL
Match NameE-valueIdentityDescription
W9QZ52_9ROSA5.2e-1267.21Uncharacterized protein OS=Morus notabilis GN=L484_014936 PE=4 SV=1[more]
U5GET4_POPTR1.1e-0638.82Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s09260g P... [more]
BLAST of CmaCh05G004830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh05G004830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703095328|ref|XP_010095507.1|7.4e-1267.21hypothetical protein L484_014936 [Morus notabilis][more]
gi|802634741|ref|XP_012078140.1|1.1e-1066.67PREDICTED: uncharacterized protein LOC105638868 [Jatropha curcas][more]
gi|720090348|ref|XP_010245067.1|6.9e-1054.05PREDICTED: uncharacterized protein LOC104588720 [Nelumbo nucifera][more]
gi|566165711|ref|XP_006384178.1|1.6e-0638.82hypothetical protein POPTR_0004s09260g, partial [Populus trichocarpa][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G004830.1CmaCh05G004830.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh05G004830Cla97C08G153820Watermelon (97103) v2cmawmbB830
CmaCh05G004830Bhi04G000590Wax gourdcmawgoB0950
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh05G004830CmaCh12G001420Cucurbita maxima (Rimu)cmacmaB192
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh05G004830Cucurbita moschata (Rifu)cmacmoB765
CmaCh05G004830Cucurbita moschata (Rifu)cmacmoB786
CmaCh05G004830Wild cucumber (PI 183967)cmacpiB803
CmaCh05G004830Cucumber (Chinese Long) v2cmacuB794
CmaCh05G004830Melon (DHL92) v3.5.1cmameB724
CmaCh05G004830Watermelon (Charleston Gray)cmawcgB709
CmaCh05G004830Watermelon (97103) v1cmawmB751
CmaCh05G004830Cucurbita pepo (Zucchini)cmacpeB766
CmaCh05G004830Cucurbita pepo (Zucchini)cmacpeB791
CmaCh05G004830Bottle gourd (USVL1VR-Ls)cmalsiB737
CmaCh05G004830Cucumber (Gy14) v2cgybcmaB260
CmaCh05G004830Melon (DHL92) v3.6.1cmamedB817
CmaCh05G004830Silver-seed gourdcarcmaB0189
CmaCh05G004830Silver-seed gourdcarcmaB0921
CmaCh05G004830Cucumber (Chinese Long) v3cmacucB0924
CmaCh05G004830Wax gourdcmawgoB0937