CmaCh05G004570 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh05G004570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	D-aminoacyl-tRNA deacylase-like protein
Location	Cma_Chr05 : 2114417 .. 2116242 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTGAATGACAAAGCAAATGCGAATCGCCGGAATCGCACCTGCAGAAGAATCTCAAGAATCTGTTGGCTGAGGCGCCCATAGAAATTCGATTCAACAACCATCTCACTCGGTTAAACCGTCAATTCACAGAAAGGGCAACAAAGAGGCAACCATGGCGACGTTAGTGCGGCAACGATAGTTTCGATCAATCCTGCAAACGAGCTCCTCGCCATGCCCGGATGGCGCCCCGGTCCTTCTCTCTAGGTCCTCTAATCTCCTCCACCGATTTCCAATTTGAAGTGTTTCTGTTTCTCCCTTCGATTAATCCGATTCTTCTTTTGATCAGGAAATGAAAAGCTTCGCTAATCGAGAGGTGAGGCTGCTGCAACACGGTAGGAGCATTGTGGTTGAGGACGACCTCAATATTCGTTGGGAGGAGCTTGCTGGCGAGGTCGTGGACGAGGTCATTTTCTTCAGGCGGCATGCTGCCGTTTCGAATCGTCCTACCCTCACTGTTCATCGGATTGGTACGATTCCAGTGTTTCTTGACTTGGTTTCTTTAATCAATAAATAGTAGATATTATTTTCCATCAAAATTTTAAAAATCTTGTTTGGAGAGGTTTTCGCCTTCGGAAGGTTTAATTCCCCTCTTCAATCCTTAAACGGTTACAAATGGTATCAGAGCCCGACACTGGGCGATGGCCAGCGAGGAGGTTGAGCTCCGAAGGGGGTGGACACAAGGCGGTAGCCAATCAAAAACATTGGACCTCGAAGGGAGTGGATTAGGGGATCCCACTTCGATTGGAGAAGGGAACGAGTGTCATCGGGGATGCTGACCCCAAAGGGGTGGATTGTGAGACCCCACATTGGCTGGGGAGGTGAACGAAGCATTCTTTATAAGGATGTGAAAACCTCTCCCTAGCACGGAGGGCCTAAAAGGGTGGATTGGGGTCCCACATTGATTAGAGAAGGGAATGAATGCTATCGAGGATGCTGACCCTCAAAGGGGTGGATTGTGAGACCCCACATCAGCTGGGGAGGTGAACGAAGCATTCTTTACAAGAGCGTGGAAATCTTTCCCTAGCACGCAGGGCCCGAAAGGGTGGATTGGGAGTCCCACATTGATTACCCCAAAGGGGGTGGATTGTGATCTTTTCTATGAGATCCCACCTCGGTTAGAGAGGGAAACAATGTATTAGGATGTAGAACCCTCTCCTTTGCACGCGCGTTTTAAAACCTTGAGTGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACAATATCTACTGGCGGTGGACTTGGACCGTTACATTTCCAACTTTTATTTAAATTTATAGTTGCTCTATCTACTTGATAACATGTCACCGAAGCTAGCTAGATCTTTTTATATTGTCATTTATCACCCATTTGTTGTTATGCATTATTCAAAATAATTTCTAAGCCTACCCATGGAAAAGATGTCTATGTAACCACTACTAACAGATATTGTTCTCTCTGCGCTTTTCTTTCTTTCTGGGCCTCCCCTTAAATTTTAAAACACGTCTAGTAGTGAGAGATTTCTACGCTCTTGTAATGAATGCTTTATTATGAATTAAGTTAGTAACTACATAACTCGATATGTTTTTAAGCGTTAACAACTTCTTAATTTCGATACCTTTATAATTTTCCCTCCCTCGATTATATGCTTTGCATCATTCTACCATATGCTCAACAATATTATCTTTTCGTCCAACATTTGTATGTTATATAATTTGATACTGTCATTGTGATGCAGGGAACATAACAGGAACAATGAAGTCCTTCTTGGCATCGAGGGTGGACATTATGCACCTCGCCACATGGACATAG

mRNA sequence

TCTTGAATGACAAAGCAAATGCGAATCGCCGGAATCGCACCTGCAGAAGAATCTCAAGAATCTGTTGGCTGAGGCGCCCATAGAAATTCGATTCAACAACCATCTCACTCGGTTAAACCGTCAATTCACAGAAAGGGCAACAAAGAGGCAACCATGGCGACGTTAGTGCGGCAACGATAGTTTCGATCAATCCTGCAAACGAGCTCCTCGCCATGCCCGGATGGCGCCCCGGTCCTTCTCTCTAGGAAATGAAAAGCTTCGCTAATCGAGAGGTGAGGCTGCTGCAACACGGTAGGAGCATTGTGGTTGAGGACGACCTCAATATTCGTTGGGAGGAGCTTGCTGGCGAGGTCGTGGACGAGGTCATTTTCTTCAGGCGGCATGCTGCCGTTTCGAATCGTCCTACCCTCACTGTTCATCGGATTGGGAACATAACAGGAACAATGAAGTCCTTCTTGGCATCGAGGGTGGACATTATGCACCTCGCCACATGGACATAG

Coding sequence (CDS)

ATGAAAAGCTTCGCTAATCGAGAGGTGAGGCTGCTGCAACACGGTAGGAGCATTGTGGTTGAGGACGACCTCAATATTCGTTGGGAGGAGCTTGCTGGCGAGGTCGTGGACGAGGTCATTTTCTTCAGGCGGCATGCTGCCGTTTCGAATCGTCCTACCCTCACTGTTCATCGGATTGGGAACATAACAGGAACAATGAAGTCCTTCTTGGCATCGAGGGTGGACATTATGCACCTCGCCACATGGACATAG

Protein sequence

MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIGNITGTMKSFLASRVDIMHLATWT

Homology

[Close]

BLAST of CmaCh05G004570 vs. Swiss-Prot
Match: GEK1_ARATH (D-aminoacyl-tRNA deacylase OS=Arabidopsis thaliana GN=GEK1 PE=1 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-18
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
          +KSF+N++ R++QH RSIV EDDL++RWEE  GEVVDEVIF  RH AVSNRP LTVH IG
Sbjct: 37 IKSFSNKQTRVIQHDRSIVKEDDLDLRWEEATGEVVDEVIFLSRHTAVSNRPALTVHPIG 96

[Close]

BLAST of CmaCh05G004570 vs. TrEMBL
Match: A0A0A0KGZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367180 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.0e-19
Identity = 51/60 (85.00%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 1  MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
          MKSFANR VRLLQH RSIVVEDDL+ RWEEL GEVVDEVIFF RH AVSNRP LTVH IG
Sbjct: 36 MKSFANRNVRLLQHDRSIVVEDDLDNRWEELTGEVVDEVIFFSRHTAVSNRPALTVHPIG 95

[Close]

BLAST of CmaCh05G004570 vs. TrEMBL
Match: A0A087GUH7_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G024800 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-16
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
          MKSF+N++ RL+QH RSIV EDDL++RWEE  GEVVDEVIF  RH AVSNRP LTVH IG
Sbjct: 37 MKSFSNQKTRLIQHDRSIVREDDLDLRWEEATGEVVDEVIFLSRHTAVSNRPALTVHPIG 96

[Close]

BLAST of CmaCh05G004570 vs. TrEMBL
Match: I3SP65_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.6e-16
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1   MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
           MKSF N  +R+L HG+SIVVEDDL+ RWEE+ GEVVDEVIFF +H AVSN+P LTVH IG
Sbjct: 117 MKSFVNEGLRVLLHGKSIVVEDDLDKRWEEVTGEVVDEVIFFSKHTAVSNKPALTVHPIG 176

[Close]

BLAST of CmaCh05G004570 vs. TrEMBL
Match: D7LQL4_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_322675 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.1e-16
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1   MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
           +KSF+N++ R++QH RSIV EDDL++RWEE  GEV+DEVIF  RH AVSNRP LTVH IG
Sbjct: 81  IKSFSNKQTRVIQHDRSIVKEDDLDLRWEEATGEVIDEVIFLSRHTAVSNRPALTVHPIG 140

[Close]

BLAST of CmaCh05G004570 vs. TrEMBL
Match: A0A059AC00_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01102 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.1e-16
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1


Query: 1  MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
          MKSFAN++VRLLQH R IV ED +++RWEE  GE VDE+IFF +H AVSNRP LTVH IG
Sbjct: 1  MKSFANQQVRLLQHDRGIVEEDHIDVRWEEATGEAVDELIFFSKHTAVSNRPALTVHPIG 60

[Close]

BLAST of CmaCh05G004570 vs. TAIR10
Match: AT2G03800.1 (AT2G03800.1 D-aminoacyl-tRNA deacylases)

HSP 1 Score: 91.7 bits (226), Expect = 2.4e-19
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
          +KSF+N++ R++QH RSIV EDDL++RWEE  GEVVDEVIF  RH AVSNRP LTVH IG
Sbjct: 37 IKSFSNKQTRVIQHDRSIVKEDDLDLRWEEATGEVVDEVIFLSRHTAVSNRPALTVHPIG 96

[Close]

BLAST of CmaCh05G004570 vs. NCBI nr
Match: gi|659089284|ref|XP_008445425.1| (PREDICTED: D-aminoacyl-tRNA deacylase [Cucumis melo])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-19
Identity = 51/60 (85.00%), Postives = 53/60 (88.33%), Query Frame = 1


Query: 1  MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
          MKSFANR+VRLLQH RSIVVEDDL+ RWEEL GEVVDEVIFF RH AVSNRP LTVH IG
Sbjct: 36 MKSFANRDVRLLQHDRSIVVEDDLDNRWEELTGEVVDEVIFFSRHTAVSNRPALTVHPIG 95

[Close]

BLAST of CmaCh05G004570 vs. NCBI nr
Match: gi|778715526|ref|XP_011657410.1| (PREDICTED: D-aminoacyl-tRNA deacylase [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 2.9e-19
Identity = 51/60 (85.00%), Postives = 52/60 (86.67%), Query Frame = 1


Query: 1  MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
          MKSFANR VRLLQH RSIVVEDDL+ RWEEL GEVVDEVIFF RH AVSNRP LTVH IG
Sbjct: 36 MKSFANRNVRLLQHDRSIVVEDDLDNRWEELTGEVVDEVIFFSRHTAVSNRPALTVHPIG 95

[Close]

BLAST of CmaCh05G004570 vs. NCBI nr
Match: gi|674240764|gb|KFK33529.1| (hypothetical protein AALP_AA5G024800 [Arabis alpina])

HSP 1 Score: 93.2 bits (230), Expect = 2.3e-16
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
          MKSF+N++ RL+QH RSIV EDDL++RWEE  GEVVDEVIF  RH AVSNRP LTVH IG
Sbjct: 37 MKSFSNQKTRLIQHDRSIVREDDLDLRWEEATGEVVDEVIFLSRHTAVSNRPALTVHPIG 96

[Close]

BLAST of CmaCh05G004570 vs. NCBI nr
Match: gi|42568915|ref|NP_178474.2| (D-aminoacyl-tRNA deacylase [Arabidopsis thaliana])

HSP 1 Score: 91.7 bits (226), Expect = 6.7e-16
Identity = 42/60 (70.00%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
          +KSF+N++ R++QH RSIV EDDL++RWEE  GEVVDEVIF  RH AVSNRP LTVH IG
Sbjct: 37 IKSFSNKQTRVIQHDRSIVKEDDLDLRWEEATGEVVDEVIFLSRHTAVSNRPALTVHPIG 96

[Close]

BLAST of CmaCh05G004570 vs. NCBI nr
Match: gi|388507982|gb|AFK42057.1| (unknown [Lotus japonicus])

HSP 1 Score: 91.7 bits (226), Expect = 6.7e-16
Identity = 43/60 (71.67%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1   MKSFANREVRLLQHGRSIVVEDDLNIRWEELAGEVVDEVIFFRRHAAVSNRPTLTVHRIG 60
           MKSF N  +R+L HG+SIVVEDDL+ RWEE+ GEVVDEVIFF +H AVSN+P LTVH IG
Sbjct: 117 MKSFVNEGLRVLLHGKSIVVEDDLDKRWEEVTGEVVDEVIFFSKHTAVSNKPALTVHPIG 176

The following BLAST results are available for this feature:

BLAST of CmaCh05G004570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GEK1_ARATH	4.2e-18	70.00	D-aminoacyl-tRNA deacylase OS=Arabidopsis thaliana GN=GEK1 PE=1 SV=2	[more]

BLAST of CmaCh05G004570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGZ7_CUCSA	2.0e-19	85.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G367180 PE=4 SV=1	[more]
A0A087GUH7_ARAAL	1.6e-16	73.33	Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G024800 PE=4 SV=1	[more]
I3SP65_LOTJA	4.6e-16	71.67	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
D7LQL4_ARALL	6.1e-16	68.33	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
A0A059AC00_EUCGR	6.1e-16	70.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01102 PE=4 SV=1	[more]

BLAST of CmaCh05G004570 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G03800.1	2.4e-19	70.00	D-aminoacyl-tRNA deacylases	[more]

BLAST of CmaCh05G004570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089284\|ref\|XP_008445425.1\|	1.7e-19	85.00	PREDICTED: D-aminoacyl-tRNA deacylase [Cucumis melo]	[more]
gi\|778715526\|ref\|XP_011657410.1\|	2.9e-19	85.00	PREDICTED: D-aminoacyl-tRNA deacylase [Cucumis sativus]	[more]
gi\|674240764\|gb\|KFK33529.1\|	2.3e-16	73.33	hypothetical protein AALP_AA5G024800 [Arabis alpina]	[more]
gi\|42568915\|ref\|NP_178474.2\|	6.7e-16	70.00	D-aminoacyl-tRNA deacylase [Arabidopsis thaliana]	[more]
gi\|388507982\|gb\|AFK42057.1\|	6.7e-16	71.67	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007508	DtdA

Vocabulary: **Molecular Function**
Term	Definition
GO:0016788	hydrolase activity, acting on ester bonds
GO:0051499	D-aminoacyl-tRNA deacylase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019478	D-amino acid catabolic process
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009636	response to toxic substance
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
molecular_function	GO:0051499	D-aminoacyl-tRNA deacylase activity
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh05G004570.1	CmaCh05G004570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007508	D-aminoacyl-tRNA deacylase DtdA	PFAM	PF04414	tRNA_deacylase	coord: 33..63 score: 5.
None	No IPR available	GENE3D	G3DSA:3.40.630.50		coord: 2..63 score: 8.5
None	No IPR available	PANTHER	PTHR34667	FAMILY NOT NAMED	coord: 1..60 score: 6.1
None	No IPR available	PANTHER	PTHR34667:SF1	D-AMINOACYL-TRNA DEACYLASE	coord: 1..60 score: 6.1
None	No IPR available	unknown	SSF142535	AF0625-like	coord: 3..64 score: 5.62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh05G004570	Cucsa.328040	Cucumber (Gy14) v1	cgycmaB0909
CmaCh05G004570	Cla022043	Watermelon (97103) v1	cmawmB751
CmaCh05G004570	Csa6G367180	Cucumber (Chinese Long) v2	cmacuB805
CmaCh05G004570	MELO3C011402	Melon (DHL92) v3.5.1	cmameB724
CmaCh05G004570	ClCG08G010600	Watermelon (Charleston Gray)	cmawcgB709
CmaCh05G004570	CSPI06G19870	Wild cucumber (PI 183967)	cmacpiB816
CmaCh05G004570	CmoCh05G004830	Cucurbita moschata (Rifu)	cmacmoB786
CmaCh05G004570	CmoCh12G000930	Cucurbita moschata (Rifu)	cmacmoB765
CmaCh05G004570	Lsi08G009130	Bottle gourd (USVL1VR-Ls)	cmalsiB737
CmaCh05G004570	Cp4.1LG11g04020	Cucurbita pepo (Zucchini)	cmacpeB766
CmaCh05G004570	Cp4.1LG07g01000	Cucurbita pepo (Zucchini)	cmacpeB791
CmaCh05G004570	MELO3C011402.2	Melon (DHL92) v3.6.1	cmamedB817
CmaCh05G004570	CsaV3_6G033900	Cucumber (Chinese Long) v3	cmacucB0950
CmaCh05G004570	Cla97C08G153480	Watermelon (97103) v2	cmawmbB830
CmaCh05G004570	Bhi04G000937	Wax gourd	cmawgoB0940
CmaCh05G004570	CsGy6G019400	Cucumber (Gy14) v2	cgybcmaB844
CmaCh05G004570	Carg20574	Silver-seed gourd	carcmaB0921

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh05G004570	CmaCh12G001130	Cucurbita maxima (Rimu)	cmacmaB192

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh05G004570	Silver-seed gourd	carcmaB0189
CmaCh05G004570	Wax gourd	cmawgoB0950