CmaCh01G016730 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G016730
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNuclear nucleic acid-binding protein C1D
LocationCma_Chr01 : 11419501 .. 11422048 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGAGGTGTTCGAGAATCTGCTGTGGTACCCGAGAAAGCGATGGATTCAGTGAAGATGACATTGGACAGCGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATCGCGGAGCCTGATGTTCTTGCTCAAATGCGGCCTCTCCAGCGGGCTCAATCTATGCTTTTGCTTTCTAGAGCCACTACCACTCTCTTCGCATGTAAACTTCTTTGATTACTCGTCATTATAATTGATTTGTTTCTCTTTTGTTTTGGACTACGGAAGCGAAATTTTTGTTTGTTTTGGTGAATTTCAGTAAAGTTGAGGTGTAGCGGAGTTCATCCAGATGATCATCCTATCAAGTCAGAGCTTGTAATTATTCTACCTTGTATCTGGTGATTAAATCTGAAATTTGCTCATATGGATAGTAATGTTATTCTCCCATGGGAAGAATCATTCTTATTCTTTCTTTATGCATATAGGAGAGATTAAGCTTGTATCAAGAGAAACTAGAACGGTTCATAGGCTTGAGTAAAGGTATGTTTGAGTTTTGATTTCTAGTTTATATCAGCATTGTTTGTGTTGTTATGTTACTATTTCCTCTTACGGTAGATCGATTATTTTGCATCTAAATTTGTTCATGAAGCACCATTGAAGCGTTCAACTACCTTGAATTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCAGATCTCACCCAAGGTTGGTTGAATCTGTTTGCAATTTTGTTCTGGGGAAGGGGAATTTCTGTGCTGGATTCCTTTTGATGAAAGATATATTTCATTATTTTCAGAGCAAAAACAGGGTATGAGAGATATTAGTAGGGGGAAGGGACCCAAAATGAAGCAATTAGAGAGGACTGTACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAATTGCTGCCAAGGAGTTTCTTGAGAAAGCAGCTCGTGAGCTTCTTGGTGATAATAATGGAGGTTTGCAGGGACCTCTATGTGGGGACGCTTCAAATGATGATCTGTAGGAAGATTGAATTCCGAATTTCACTTGGTACCTGTTTGATACATTTATTTCTAACTTTGGCGTCAGTTATTTTAATAAATTGGTTGCTAGAATATGATTTGGTTTCTTAATAAAATTTCCAGTTTAGTTCTATTGCTCATTCTTGTATTACTGGTTGTTAGCTTGATAAGCTTTGCGAAATCGTATGGATTGTGAGTTTTAAATGTAGAATTGTACTCTGTTTCTGGACCTTTTTTGATGTGTTTTAGCTTCGTGATTTGTTCGTGATTTGTTGGAAAGATGAGGTTTATGAGATTCCACAACGGTTGGAAAGATGTGGTTTATAAGATTCATATCGGTTGGAAAGGGGAACAATGCATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGCGTTTTAAAACCATGAGGCTGACGGTAATACGTAACAGGCTAAAGTGGCAATATCTACTAGCGGTGGCCTTGGACTATTACAAATGGGATTAGAGCGAGACACTAGGTGGTGTGCCAGCAAGGACGCGGGTCTCCAAGGGGAGTGGATTGTGAGATCGGTGAGCTTGGGCTGTTACAGATGGTATTGGGTGGATTTGTTCACTGGTCCCCTTTTCGATGTGTTTTAGTTTCGTGATTTGTTCTTTGTCATTGTTAAGCGATAGAATAGCCCGACTAGTTAAAGTATGTACCTTCGACCAAGAGGTTAGAGGTTCGAATCACTCACTCCGGTGTTTATAAACAAGGCCTTGCACATGATCTTTGTTAGCTCACTTCTCCTCATATATCTATATTTATGTGCATGTGTTCCTTTATGTTTTAACACTTCCTCACATTTACATCTTTCAGGATTATGAAAACCAGGGACGGCCTGGTACCCTTATAATAAGCCAACTCCTGAAATATATATATATATATAAAAGTTACTATTAGGACCTGGTTGGGATTTGGCACTCTACTTTTCCTGGTTTCTTCTGTGCCGTTTATATGTAAAGTAGCCTATTATAGTAGCTGAATTTCTATTGTTTTTTGGTTGTATATCAATCATCATCTTGTTATGTGGATTAGCCTTTTGCCATAAATTAATAATATCTGTTCGTTCTGATAAACCACCTCCAAGAATTTTGTTCTGTGTTGTTTGATGGGCTTTGATAAATTCTTGTTTTAATCAACTTCCAAGTCAAGCGCAGCTGCAGACTAGTAGAGCCACCGCTGTCGTAGCAGGGACGTTGCTGGAACGGGGTTGGAGAAATACCAGAATCTCTGTTGCTTGTGCTGCTGCTCAGATTGACCCTCCAACCCATGCCAGTATCTTCGTTAGTATCGGTGTCTGGCTCGGTGTCTAGCTCTAATATCATTTATAACAGTTCAAGACCACTGTTGACAAATACTGATATGGGACACTTTCTTTGGGAGCCAGTATTCTTACTGGCATACCGTCTAGTTTTTGGTTATGACATCATTTGTAACCGCACAAGTTCATCGCTAGCAAATATTATCGCTTTGACTCGTTACATATCGTTCC

mRNA sequence

ATGGAGGGAGGTGTTCGAGAATCTGCTGTGGTACCCGAGAAAGCGATGGATTCAGTGAAGATGACATTGGACAGCGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATCGCGGAGCCTGATGTTCTTGCTCAAATGCGGCCTCTCCAGCGGGCTCAATCTATGCTTTTGCTTTCTAGAGCCACTACCACTCTCTTCGCATTAAAGTTGAGGTGTAGCGGAGTTCATCCAGATGATCATCCTATCAAGTCAGAGCTTGAGAGATTAAGCTTGTATCAAGAGAAACTAGAACGGTTCATAGGCTTGAGTAAAGCACCATTGAAGCGTTCAACTACCTTGAATTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCAGATCTCACCCAAGAGCAAAAACAGGGTATGAGAGATATTAGTAGGGGGAAGGGACCCAAAATGAAGCAATTAGAGAGGACTGTACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAATTGCTGCCAAGGAGTTTCTTGAGAAAGCAGCTCGTGAGCTTCTTGGTGATAATAATGGAGGTTTGCAGGGACCTCTATGTGGGGACGCTTCAAATGATGATCTGTAGGAAGATTGAATTCCGAATTTCACTTGGATTATGAAAACCAGGGACGGCCTGGTACCCTTATAATAAGCCAACTCCTGAAATATATATATATATATAAAAGTTACTATTAGGACCTGGTTGGGATTTGGCACTCTACTTTTCCTGGTTTCTTCTGTGCCGTTTATATGTAAAGTAGCCTATTATAGTAGCTGAATTTCTATTGTTTTTTGGTTGTATATCAATCATCATCTTGTTATGTGGATTAGCCTTTTGCCATAAATTAATAATATCTGTTCGTTCTGATAAACCACCTCCAAGAATTTTGTTCTGTGTTGTTTGATGGGCTTTGATAAATTCTTGTTTTAATCAACTTCCAAGTCAAGCGCAGCTGCAGACTAGTAGAGCCACCGCTGTCGTAGCAGGGACGTTGCTGGAACGGGGTTGGAGAAATACCAGAATCTCTGTTGCTTGTGCTGCTGCTCAGATTGACCCTCCAACCCATGCCAGTATCTTCGTTAGTATCGGTGTCTGGCTCGGTGTCTAGCTCTAATATCATTTATAACAGTTCAAGACCACTGTTGACAAATACTGATATGGGACACTTTCTTTGGGAGCCAGTATTCTTACTGGCATACCGTCTAGTTTTTGGTTATGACATCATTTGTAACCGCACAAGTTCATCGCTAGCAAATATTATCGCTTTGACTCGTTACATATCGTTCC

Coding sequence (CDS)

ATGGAGGGAGGTGTTCGAGAATCTGCTGTGGTACCCGAGAAAGCGATGGATTCAGTGAAGATGACATTGGACAGCGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATCGCGGAGCCTGATGTTCTTGCTCAAATGCGGCCTCTCCAGCGGGCTCAATCTATGCTTTTGCTTTCTAGAGCCACTACCACTCTCTTCGCATTAAAGTTGAGGTGTAGCGGAGTTCATCCAGATGATCATCCTATCAAGTCAGAGCTTGAGAGATTAAGCTTGTATCAAGAGAAACTAGAACGGTTCATAGGCTTGAGTAAAGCACCATTGAAGCGTTCAACTACCTTGAATTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCAGATCTCACCCAAGAGCAAAAACAGGGTATGAGAGATATTAGTAGGGGGAAGGGACCCAAAATGAAGCAATTAGAGAGGACTGTACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAATTGCTGCCAAGGAGTTTCTTGAGAAAGCAGCTCGTGAGCTTCTTGGTGATAATAATGGAGGTTTGCAGGGACCTCTATGTGGGGACGCTTCAAATGATGATCTGTAG

Protein sequence

MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLLSRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLEKAARELLGDNNGGLQGPLCGDASNDDL
Homology
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BLAST of CmaCh01G016730 vs. Swiss-Prot
Match: C1D_XENLA (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis GN=c1d PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-09
Identity = 35/112 (31.25%), Postives = 64/112 (57.14%), Query Frame = 1 

Query: 24  DSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLLSRATTTLFALKLRCSGVHPDDHP 83
           +SV  V   L   +S++  ++L ++ PL++A+  L+ +    +LF + L   G++P +HP
Sbjct: 24  NSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIYLTTQGINPKEHP 83

Query: 84  IKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQ 136
           +K ELER+  Y  +++          K++  L+  AA RFI+H+L D T E+
Sbjct: 84  VKEELERIRGYMNRVKEI-----TDRKKAARLDKGAARRFIKHALCDPTSEE 130

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BLAST of CmaCh01G016730 vs. Swiss-Prot
Match: C1D_DANRE (Nuclear nucleic acid-binding protein C1D OS=Danio rerio GN=c1d PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 6.8e-09
Identity = 37/126 (29.37%), Postives = 71/126 (56.35%), Query Frame = 1 

Query: 12  PEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLLSRATTTLFALK 71
           P +  D++     S+  VQ  + + +S++  D L ++ PL++A+  L+ + A  ++F + 
Sbjct: 11  PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSAYALNSMFWMY 70

Query: 72  LRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDL 131
           L   GV+P DHPIK ELER+  Y  K++      KA       ++ +AA+RF+ ++L D 
Sbjct: 71  LVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-----AHIDKEAASRFVRNALWDA 130

Query: 132 TQEQKQ 138
             ++++
Sbjct: 131 DDKKRK 131

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BLAST of CmaCh01G016730 vs. Swiss-Prot
Match: C1D_CHICK (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus GN=C1D PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 34/126 (26.98%), Postives = 69/126 (54.76%), Query Frame = 1 

Query: 12  PEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLLSRATTTLFALK 71
           P +  D +     S+  V   L + +S++  ++L ++ PL++A+  L+ +    ++F + 
Sbjct: 11  PTEIHDYLTTFEKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDL 131
           L   G++P +HP+K ELER+  Y  K++       A  K+++ L+  AA+RF+ ++L + 
Sbjct: 71  LATQGINPKEHPVKQELERIRTYMNKVKEI-----ADKKKASKLDKGAASRFVRNALWEP 130

Query: 132 TQEQKQ 138
             E  Q
Sbjct: 131 NPENGQ 131

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BLAST of CmaCh01G016730 vs. Swiss-Prot
Match: C1D_CRIGR (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus GN=C1D PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 4.8e-07
Identity = 33/135 (24.44%), Postives = 74/135 (54.81%), Query Frame = 1 

Query: 12  PEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLLSRATTTLFALK 71
           P +  +S+     S+  V   L + +S++  ++L ++ PL++A+  L+ +    ++F + 
Sbjct: 11  PVEIHESLSALESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDL 131
           L   GV+P +HP+K ELER+ +Y  +++          K++  L+  AA+RF++++L + 
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAAKLDRGAASRFVKNALWEP 130

Query: 132 TQEQKQGMRDISRGK 147
            Q+    + +  + K
Sbjct: 131 KQKNTPNVANKGKSK 140

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BLAST of CmaCh01G016730 vs. Swiss-Prot
Match: C1D_BOVIN (Nuclear nucleic acid-binding protein C1D OS=Bos taurus GN=C1D PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.3e-07
Identity = 29/105 (27.62%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 24  DSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLLSRATTTLFALKLRCSGVHPDDHP 83
           +S+  V   L + +S++  ++L ++ PL++A+  L+ +    ++F + L   GV+P +HP
Sbjct: 23  NSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHP 82

Query: 84  IKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAATRFIEHSL 129
           +K ELER+ +Y  +++          K++  L+  AA+RF++++L
Sbjct: 83  VKQELERIRVYMNRVKEI-----TDKKKAGKLDRGAASRFVKNAL 122

[Close]
BLAST of CmaCh01G016730 vs. TrEMBL
Match: A0A0A0L118_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G651890 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 2.8e-94
Identity = 188/206 (91.26%), Postives = 194/206 (94.17%), Query Frame = 1 

Query: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60
           MEGGVR+ AVVPEK MDSVK TLD+VEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120
           +R TTTLFALKLRCSGVH DDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQEQK  MRDISRGKG KMKQLER VQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDNNGGLQGPLCGDASNDD 207
           KAARELLGD NGGLQGPLCGDA +DD
Sbjct: 181 KAARELLGDCNGGLQGPLCGDALDDD 206

[Close]
BLAST of CmaCh01G016730 vs. TrEMBL
Match: A0A0D2UH91_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G063300 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 7.9e-73
Identity = 151/208 (72.60%), Postives = 174/208 (83.65%), Query Frame = 1 

Query: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60
           MEGG R S+ +PE  M+SVK TL +VE ++THL+ FLS+++PDVLAQM PLQRAQ+   L
Sbjct: 1   MEGGERGSSAIPESVMNSVKTTLVNVENLRTHLLEFLSLSDPDVLAQMPPLQRAQAFFTL 60

Query: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120
           ++ATTTLFALKLRCSGVHPD+HPIKSELERLSLYQEKLERFI LSKAPL+ STTLN QAA
Sbjct: 61  AKATTTLFALKLRCSGVHPDEHPIKSELERLSLYQEKLERFIDLSKAPLRPSTTLNSQAA 120

Query: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLT EQ+Q MR IS+G+GP +K     V+KKRKYQSSEKQSV+ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTPEQRQSMRQISKGEGPTIKYSGSNVKKKRKYQSSEKQSVEDAAKEFLE 180

Query: 181 KAARELLGDNNGGLQGPL-CGDASNDDL 208
           KAAREL GD   G +GPL   DAS+DDL
Sbjct: 181 KAARELFGDKKDGFKGPLQVHDASDDDL 208

[Close]
BLAST of CmaCh01G016730 vs. TrEMBL
Match: A0A061GIF8_THECC (Sas10/Utp3/C1D family OS=Theobroma cacao GN=TCM_036901 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71
Identity = 148/207 (71.50%), Postives = 174/207 (84.06%), Query Frame = 1 

Query: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60
           MEGG   S+V+PE  MDSV+ TL +VE V+THL+ FLS+++PDVLA+M PLQRAQ++  L
Sbjct: 1   MEGG---SSVIPESVMDSVQTTLANVEDVRTHLLQFLSLSDPDVLAEMPPLQRAQALFSL 60

Query: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120
           ++AT TLF L+LRCSGVHPDDHPIKSELERLSLY++KL+RFI LSKAPL+ STTLN QAA
Sbjct: 61  AKATATLFTLRLRCSGVHPDDHPIKSELERLSLYEDKLQRFIDLSKAPLRPSTTLNSQAA 120

Query: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLT EQ+  MR ISRG+GPK+K  + +V KKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTPEQRLSMRQISRGEGPKIKYSDSSV-KKRKYQSSEKQSVQAAAKEFLE 180

Query: 181 KAARELLGDNNGGLQGPLCGDASNDDL 208
           KAA EL GDN GG +GPL  D S+DDL
Sbjct: 181 KAASELFGDNKGGFKGPLQADTSDDDL 203

[Close]
BLAST of CmaCh01G016730 vs. TrEMBL
Match: A0A0B0NSY9_GOSAR (Nuclear nucleic acid-binding protein C1D OS=Gossypium arboreum GN=F383_05315 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 5.7e-71
Identity = 148/208 (71.15%), Postives = 171/208 (82.21%), Query Frame = 1 

Query: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60
           MEGG R S+ +PE  M+SVK TL +VE ++THL+ FLS+++PDVLAQM PLQRAQ+   L
Sbjct: 1   MEGGERGSSAIPESVMNSVKTTLVNVENLRTHLLEFLSLSDPDVLAQMPPLQRAQAFFTL 60

Query: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120
           ++ATTTLFALKLRCSGVHPD+HPIKSELERLSLYQEKLERFI LSKAPL+ STTLN QA 
Sbjct: 61  AKATTTLFALKLRCSGVHPDEHPIKSELERLSLYQEKLERFIDLSKAPLRPSTTLNSQAT 120

Query: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLT EQ+Q MR IS+G+G  +K     V+KKRKYQSSEKQSV+ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTPEQRQSMRQISKGEGRTIKYSGSNVKKKRKYQSSEKQSVEDAAKEFLE 180

Query: 181 KAARELLGDNNGGLQGPL-CGDASNDDL 208
           KAAREL GD   G +GPL   D S+DDL
Sbjct: 181 KAARELFGDKKDGFKGPLQVDDTSDDDL 208

[Close]
BLAST of CmaCh01G016730 vs. TrEMBL
Match: A0A067KBA3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07077 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 8.2e-70
Identity = 142/206 (68.93%), Postives = 172/206 (83.50%), Query Frame = 1 

Query: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60
           MEG    S++VPE  MDS K TL ++EQV+THL+ FLS ++P+VLA+M PL+RAQS+LLL
Sbjct: 1   MEGRESSSSLVPESVMDSAKTTLATLEQVETHLLHFLSFSDPEVLAEMPPLRRAQSLLLL 60

Query: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120
           S+A T LFAL+LRCSG+  D+HPI++ELERLSLYQ+KLER + LSKAPL+ STTLNYQAA
Sbjct: 61  SKAVTILFALRLRCSGIDLDEHPIRTELERLSLYQDKLERSMDLSKAPLRPSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDL  EQK+ MRDIS+G+GP+MK  ER++ KKRKYQSSEK+SVQ AA EFLE
Sbjct: 121 TRFIEHSLPDLKPEQKKSMRDISKGQGPRMKYSERSIHKKRKYQSSEKRSVQAAASEFLE 180

Query: 181 KAARELLGDNNGGLQGPLCGDASNDD 207
           KAARELLGDN  G +GPL  D  +DD
Sbjct: 181 KAARELLGDNTSGFKGPLQIDVLDDD 206

[Close]
BLAST of CmaCh01G016730 vs. TAIR10
Match: AT5G25080.1 (AT5G25080.1 Sas10/Utp3/C1D family)

HSP 1 Score: 214.5 bits (545), Expect = 6.0e-56
Identity = 116/211 (54.98%), Postives = 158/211 (74.88%), Query Frame = 1 

Query: 1   MEGGVRESA-----VVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQ 60
           MEGG   S      VVPE A+++V  TL  +++++  L   L++AEP+VLA M+PLQRA+
Sbjct: 1   MEGGGGSSGGGAGGVVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAK 60

Query: 61  SMLLLSRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTL 120
           +M LL+ ATTTL+ L+LRC+GV PDDH +KSE+ER+++Y+EK ++ +  SK PL+ +T L
Sbjct: 61  TMHLLAEATTTLYELRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVL 120

Query: 121 NYQAATRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAA 180
           N QAATRFIEHSLPDLT  QKQ +RD+S+G+  +++  E T  +KRKYQS+EKQSVQ AA
Sbjct: 121 NRQAATRFIEHSLPDLTSTQKQSIRDLSKGEKSRIRYSE-TSARKRKYQSNEKQSVQSAA 180

Query: 181 KEFLEKAARELLGDNNGGLQGPLCGDASNDD 207
           K+FLEKAARE++G N  GL+GPL   A   D
Sbjct: 181 KDFLEKAAREIIGHNENGLKGPLVAAADGSD 210

[Close]
BLAST of CmaCh01G016730 vs. NCBI nr
Match: gi|449455511|ref|XP_004145496.1| (PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 4.0e-94
Identity = 188/206 (91.26%), Postives = 194/206 (94.17%), Query Frame = 1 

Query: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60
           MEGGVR+ AVVPEK MDSVK TLD+VEQVQTHLISFLSIAEPDVLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120
           +R TTTLFALKLRCSGVH DDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQEQK  MRDISRGKG KMKQLER VQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDNNGGLQGPLCGDASNDD 207
           KAARELLGD NGGLQGPLCGDA +DD
Sbjct: 181 KAARELLGDCNGGLQGPLCGDALDDD 206

[Close]
BLAST of CmaCh01G016730 vs. NCBI nr
Match: gi|659104201|ref|XP_008452844.1| (PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo])

HSP 1 Score: 349.4 bits (895), Expect = 4.4e-93
Identity = 184/206 (89.32%), Postives = 194/206 (94.17%), Query Frame = 1 

Query: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60
           MEGGVR+ AVVPEK MDSVK TLD+VE VQTHLISFLSIAEP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120
           +R TTTLFALKLRC+GVH DDHPIKSELERLSLY++KLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLTQEQK  MRDISRGKG KMKQLER VQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDNNGGLQGPLCGDASNDD 207
           KAARELLGD+NGGLQGPLCGDAS+DD
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDD 206

[Close]
BLAST of CmaCh01G016730 vs. NCBI nr
Match: gi|823222036|ref|XP_012443718.1| (PREDICTED: nuclear nucleic acid-binding protein C1D [Gossypium raimondii])

HSP 1 Score: 281.6 bits (719), Expect = 1.1e-72
Identity = 151/208 (72.60%), Postives = 174/208 (83.65%), Query Frame = 1 

Query: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60
           MEGG R S+ +PE  M+SVK TL +VE ++THL+ FLS+++PDVLAQM PLQRAQ+   L
Sbjct: 1   MEGGERGSSAIPESVMNSVKTTLVNVENLRTHLLEFLSLSDPDVLAQMPPLQRAQAFFTL 60

Query: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120
           ++ATTTLFALKLRCSGVHPD+HPIKSELERLSLYQEKLERFI LSKAPL+ STTLN QAA
Sbjct: 61  AKATTTLFALKLRCSGVHPDEHPIKSELERLSLYQEKLERFIDLSKAPLRPSTTLNSQAA 120

Query: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLT EQ+Q MR IS+G+GP +K     V+KKRKYQSSEKQSV+ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTPEQRQSMRQISKGEGPTIKYSGSNVKKKRKYQSSEKQSVEDAAKEFLE 180

Query: 181 KAARELLGDNNGGLQGPL-CGDASNDDL 208
           KAAREL GD   G +GPL   DAS+DDL
Sbjct: 181 KAARELFGDKKDGFKGPLQVHDASDDDL 208

[Close]
BLAST of CmaCh01G016730 vs. NCBI nr
Match: gi|590571851|ref|XP_007011707.1| (Sas10/Utp3/C1D family [Theobroma cacao])

HSP 1 Score: 277.7 bits (709), Expect = 1.6e-71
Identity = 148/207 (71.50%), Postives = 174/207 (84.06%), Query Frame = 1 

Query: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60
           MEGG   S+V+PE  MDSV+ TL +VE V+THL+ FLS+++PDVLA+M PLQRAQ++  L
Sbjct: 1   MEGG---SSVIPESVMDSVQTTLANVEDVRTHLLQFLSLSDPDVLAEMPPLQRAQALFSL 60

Query: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120
           ++AT TLF L+LRCSGVHPDDHPIKSELERLSLY++KL+RFI LSKAPL+ STTLN QAA
Sbjct: 61  AKATATLFTLRLRCSGVHPDDHPIKSELERLSLYEDKLQRFIDLSKAPLRPSTTLNSQAA 120

Query: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDLT EQ+  MR ISRG+GPK+K  + +V KKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTPEQRLSMRQISRGEGPKIKYSDSSV-KKRKYQSSEKQSVQAAAKEFLE 180

Query: 181 KAARELLGDNNGGLQGPLCGDASNDDL 208
           KAA EL GDN GG +GPL  D S+DDL
Sbjct: 181 KAASELFGDNKGGFKGPLQADTSDDDL 203

[Close]
BLAST of CmaCh01G016730 vs. NCBI nr
Match: gi|1009133679|ref|XP_015884032.1| (PREDICTED: nuclear nucleic acid-binding protein C1D [Ziziphus jujuba])

HSP 1 Score: 275.8 bits (704), Expect = 6.2e-71
Identity = 143/206 (69.42%), Postives = 177/206 (85.92%), Query Frame = 1 

Query: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60
           ME   RES++VP+ AMDSVK TL  VE+V+  L  FLS+++P+VL+QM+PLQRAQS+LLL
Sbjct: 1   MEVSERESSIVPDSAMDSVKRTLVHVEEVEATLPDFLSLSDPEVLSQMQPLQRAQSLLLL 60

Query: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120
           ++ T+TLFALKLRC+GVHPDDHP+KSELER++LYQ+KLERFI LSKAPL+ STTLN +AA
Sbjct: 61  AKITSTLFALKLRCTGVHPDDHPVKSELERVNLYQDKLERFIDLSKAPLRPSTTLNTRAA 120

Query: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180
           TRFIEHSLPDL  EQK+ MRDISR +G  + ++ER +QKKRKYQS++KQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLNPEQKRNMRDISRREGKAVNRMERNLQKKRKYQSTDKQSVQTAAKEFLE 180

Query: 181 KAARELLGDNNGGLQGPLCGDASNDD 207
           KAARELLGDNN G +GPL  +AS+ +
Sbjct: 181 KAARELLGDNNNGFKGPLRAEASDQE 206

The following BLAST results are available for this feature:
BLAST of CmaCh01G016730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
C1D_XENLA5.2e-0931.25Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis GN=c1d PE=2 SV=1[more]
C1D_DANRE6.8e-0929.37Nuclear nucleic acid-binding protein C1D OS=Danio rerio GN=c1d PE=2 SV=1[more]
C1D_CHICK1.3e-0726.98Nuclear nucleic acid-binding protein C1D OS=Gallus gallus GN=C1D PE=2 SV=1[more]
C1D_CRIGR4.8e-0724.44Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus GN=C1D PE=2 SV=1[more]
C1D_BOVIN8.3e-0727.62Nuclear nucleic acid-binding protein C1D OS=Bos taurus GN=C1D PE=2 SV=1[more]
BLAST of CmaCh01G016730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L118_CUCSA2.8e-9491.26Uncharacterized protein OS=Cucumis sativus GN=Csa_4G651890 PE=4 SV=1[more]
A0A0D2UH91_GOSRA7.9e-7372.60Uncharacterized protein OS=Gossypium raimondii GN=B456_009G063300 PE=4 SV=1[more]
A0A061GIF8_THECC1.1e-7171.50Sas10/Utp3/C1D family OS=Theobroma cacao GN=TCM_036901 PE=4 SV=1[more]
A0A0B0NSY9_GOSAR5.7e-7171.15Nuclear nucleic acid-binding protein C1D OS=Gossypium arboreum GN=F383_05315 PE=... [more]
A0A067KBA3_JATCU8.2e-7068.93Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07077 PE=4 SV=1[more]
BLAST of CmaCh01G016730 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G25080.16.0e-5654.98 Sas10/Utp3/C1D family[more]
BLAST of CmaCh01G016730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449455511|ref|XP_004145496.1|4.0e-9491.26PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis sativus][more]
gi|659104201|ref|XP_008452844.1|4.4e-9389.32PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo][more]
gi|823222036|ref|XP_012443718.1|1.1e-7272.60PREDICTED: nuclear nucleic acid-binding protein C1D [Gossypium raimondii][more]
gi|590571851|ref|XP_007011707.1|1.6e-7171.50Sas10/Utp3/C1D family [Theobroma cacao][more]
gi|1009133679|ref|XP_015884032.1|6.2e-7169.42PREDICTED: nuclear nucleic acid-binding protein C1D [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007146Sas10/Utp3/C1D
IPR011082Exosome-assoc_fac/DNA_repair
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G016730.1CmaCh01G016730.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007146Sas10/Utp3/C1DPFAMPF04000Sas10_Utp3coord: 24..97
score: 1.
IPR011082Exosome-associated factor Rrp47/DNA strand repair C1DPANTHERPTHR15341SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSORcoord: 1..206
score: 4.3
NoneNo IPR availablePANTHERPTHR15341:SF3NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1Dcoord: 1..206
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G016730Cucsa.271460Cucumber (Gy14) v1cgycmaB0757
CmaCh01G016730Cla021034Watermelon (97103) v1cmawmB441
CmaCh01G016730Csa4G651890Cucumber (Chinese Long) v2cmacuB473
CmaCh01G016730MELO3C016954Melon (DHL92) v3.5.1cmameB432
CmaCh01G016730ClCG05G016220Watermelon (Charleston Gray)cmawcgB412
CmaCh01G016730CSPI04G26170Wild cucumber (PI 183967)cmacpiB476
CmaCh01G016730CmoCh01G017210Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G016730CmoCh09G004070Cucurbita moschata (Rifu)cmacmoB435
CmaCh01G016730Lsi04G013430Bottle gourd (USVL1VR-Ls)cmalsiB424
CmaCh01G016730Cp4.1LG02g05560Cucurbita pepo (Zucchini)cmacpeB490
CmaCh01G016730Cp4.1LG06g02900Cucurbita pepo (Zucchini)cmacpeB507
CmaCh01G016730MELO3C016954.2Melon (DHL92) v3.6.1cmamedB499
CmaCh01G016730CsaV3_4G036490Cucumber (Chinese Long) v3cmacucB0565
CmaCh01G016730Cla97C05G097190Watermelon (97103) v2cmawmbB480
CmaCh01G016730Bhi09G002487Wax gourdcmawgoB0600
CmaCh01G016730CsGy4G024480Cucumber (Gy14) v2cgybcmaB514
CmaCh01G016730Carg10749Silver-seed gourdcarcmaB1069
CmaCh01G016730Carg02834Silver-seed gourdcarcmaB0896
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh01G016730CmaCh09G004030Cucurbita maxima (Rimu)cmacmaB051
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G016730Cucurbita maxima (Rimu)cmacmaB109
CmaCh01G016730Cucurbita maxima (Rimu)cmacmaB146
CmaCh01G016730Cucurbita moschata (Rifu)cmacmoB451
CmaCh01G016730Watermelon (Charleston Gray)cmawcgB421
CmaCh01G016730Watermelon (97103) v1cmawmB467
CmaCh01G016730Bottle gourd (USVL1VR-Ls)cmalsiB436
CmaCh01G016730Bottle gourd (USVL1VR-Ls)cmalsiB447
CmaCh01G016730Cucumber (Gy14) v2cgybcmaB109
CmaCh01G016730Melon (DHL92) v3.6.1cmamedB470
CmaCh01G016730Silver-seed gourdcarcmaB0715
CmaCh01G016730Cucumber (Chinese Long) v3cmacucB0517
CmaCh01G016730Watermelon (97103) v2cmawmbB488
CmaCh01G016730Wax gourdcmawgoB0632