CmaCh01G014910 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G014910
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionDNA-directed RNA polymerase subunit beta
LocationCma_Chr01 : 10474171 .. 10476886 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGACCAAATAAAAAGATTAATATTTTAATTTAATCAAAATAAAAATAAAAAAAACAAATCAAAATCGGCGCCTCACCTCCCAAACGCCAATCTATCATCAGCTATCGATTTCATCAGAGACGAAGGAGAAGAAGGAAAGGAAGGGAAATAATCTTCTCCGGCGAGAGGATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTTCAAAGCGCAAATTCACGAGATCCGTTAATAAACATGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCTGATTTTCTTCCTGCCGATTGGTACGCACACAAACTTCGAGAATTCCGATTTTCGCTGATTCGTTTTTAGTTTTCGAGTTTTTGCGTAGAATTAATCGAGTATAGATTTGATTCCTAGAGGAATGGGAGAATGATTTTGTTCATTTTGAATTATGAATCGATGTATTTAAGATTTTCAATTCACTTCGTGTTTTTATCCAGAAATATGGCGCGACTGTGTTTCCAATGACCTTGAAATTATTGAGTTCAACAAATTGGATGTTTGGTTTCCATGAGGCTCTCTTTTGGCTATTGTGGAAAATTCCTTATTTCTGTATTGTTCGCTGATGTTGAAGTTTCTAGGAAATGTTTGCTTAGGAATCAAATTCCTTATCCATTAGATTGTGCATGATAAGTCGATGAGTTTGGCGGTGTTGGAATTCATATTCCTGCTTTATTTTATCCTTTCATTCTCACAGCCAAACAGTTCCATGAAACTATGTGCGACTTTGGTAGATTTGTGATAGAATCTATTTGTAACAACTCAAGCCTACCACTAACCACAGATATTGTTCTCTTTGGGTTTTCCTTTTCAGACTTTCTCTCAAAGTTTTTAATTTTTAAAGGCATCGGTTAGAGAGAGATTTCCACACTCTCATAAAAAATGTTTCGTTTTCCTTCCCGACCGATGTGGGATCTCGAAATCCACACCCCTTCGTGGCCTAGTGTTCTTTCTGGCACTCATTCTCATCCCATTCTTTCATGGCCCAGCCCACCCCCCTTAGGGGTTTTGCCTCCTCATTAACACATCACCCGATCTTTGGCTCTGACACCATTTGTAAAGCCGAAGCTCCCCGCTAATAGATATTGTCCTATTTGGGTTTTTTCTTTCGGGCTTCTTCTCAAAGTTTTTAAAATGCGTCTGCTAGGGAGAGGTTTCCACACCCTTATAAAAAATGTTTCATTCTCCTCTCCAATCAAGGTGGGATCTCATAGATTCTATTACTGAAATATTTGTTTGGTGAACAAGTTTTTAATATACTATTTCATGTTACAAACTCGTTTCATTCTCCTCCCCAACCGATATGGGATTCCACCACATACATATTCAAATTGTTTTCAAATTTCTGTTTCTTGATCACCCTAAATATTTTACTCTCTTTGGCAGGCATCAAGCACACAAGAAGAATCCTCTAGGCCCAAGTTTACATGTAACTGTTCACCTATGCAAGTTAGTACTAGATATTGTAATTGTTTCTCTGTCAATATCTTTATCTTGAAACTTCCTATATAGTTCACTGCAGAGGAAGCTATTCAACGCCAGCTAGATGCACTGAGGTACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGGTAGTGTGCATTGTAAAGGGTCTTCATTTCTTCATATTCATTGCTTGTGTAATGACACAGTGGCCTATAAACTAAACATCTCTCAATAAACGACAGTTTGCTGGGTTCAATCCTCTTCAAAGGTCGACATATTTCGGTCCCTTCTTCGATTTGGGACAGGTATAGTGTGAAACTTCAACAATTTATATGAGCAATACTGTATCTGCTCATTCTTTTCTTGATTTGATGCATTTTTTGACAGTGCAGTTTGAAAGATTCAGACGGGTATTCCACCATTCGACGTATCGTGTATTGCTCGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGATTGTAGAGGAGGTAAAGCAGCCTCCATATTGAGCTTGATTGACTCCTATATCAAGTAGCTAACTTTTGAGTACTTTCTTTGCCAGTAAATTTATGTACTGTAAAATAATATCTTGTGGATTTACAAACTCGGAAACAGAATCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACTATGGTTCAGGTTAGGCTATGTCATTTTGAATTTGTTGTGATCGTTAGTAGTCTGCACAGAATGTTATATCACTATACTTTATGCTAACGGAATTCATATTATCACTAGATTGATAATTTCTAAAACTTATTGGCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAAAGTGTGCTTAACGATGGAGATGCATTTAGTGGAGGCTTAGCCTACTAAGGAAAAGGATGCTTTGCTCAAATTGGGTGACTGGTTAGTAAACTTAGCATAATGTTGTTCAATTTGTATATTTGAAATGTATATCATAGGTCTGTATTATAATTTGAACCCTTGTAAGATCATAGAACTTAGAATTTGTATATATTATTTACATGGTTTCGTTCTACCTTTGACAGTCTATGTTCGTGTGCATGTGATTAGGGTGTTCTTGTACTAGTTGGGTTGGTCGAGTTTTTAACACTCCCATAAACAAATACGAAGGAATACAAAACAACCTTTTCAGTTG

mRNA sequence

TGGACCAAATAAAAAGATTAATATTTTAATTTAATCAAAATAAAAATAAAAAAAACAAATCAAAATCGGCGCCTCACCTCCCAAACGCCAATCTATCATCAGCTATCGATTTCATCAGAGACGAAGGAGAAGAAGGAAAGGAAGGGAAATAATCTTCTCCGGCGAGAGGATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTTCAAAGCGCAAATTCACGAGATCCGTTAATAAACATGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCTGATTTTCTTCCTGCCGATTGGCATCAAGCACACAAGAAGAATCCTCTAGGCCCAAGTTTACATTTCACTGCAGAGGAAGCTATTCAACGCCAGCTAGATGCACTGAGGTACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCAATCCTCTTCAAAGGTCGACATATTTCGGTCCCTTCTTCGATTTGGGACAGTTTGAAAGATTCAGACGGGTATTCCACCATTCGACGTATCGTGTATTGCTCGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGATTGTAGAGGAGAATCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACTATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAAAGTGTGCTTAACGATGGAGATGCATTTAGTGGAGGCTTAGCCTACTAAGGAAAAGGATGCTTTGCTCAAATTGGGTGACTGGTTAGTAAACTTAGCATAATGTTGTTCAATTTGTATATTTGAAATGTATATCATAGGTCTGTATTATAATTTGAACCCTTGTAAGATCATAGAACTTAGAATTTGTATATATTATTTACATGGTTTCGTTCTACCTTTGACAGTCTATGTTCGTGTGCATGTGATTAGGGTGTTCTTGTACTAGTTGGGTTGGTCGAGTTTTTAACACTCCCATAAACAAATACGAAGGAATACAAAACAACCTTTTCAGTTG

Coding sequence (CDS)

ATGTCATGTTGTTCGTCCTTATCAGCGGCTCCTACATCCATGTCTTTGATTTCAAAGCGCAAATTCACGAGATCCGTTAATAAACATGTGATCGTTTCCATGAATTCTCGCTTCAGAGCTTCTGCAGAAGTTCCTGATTTTCTTCCTGCCGATTGGCATCAAGCACACAAGAAGAATCCTCTAGGCCCAAGTTTACATTTCACTGCAGAGGAAGCTATTCAACGCCAGCTAGATGCACTGAGGTACAATGATCGACCCCATCAAGATTATGGAATTGAGGTCATGTACCAGTTTGCTGGGTTCAATCCTCTTCAAAGGTCGACATATTTCGGTCCCTTCTTCGATTTGGGACAGTTTGAAAGATTCAGACGGGTATTCCACCATTCGACGTATCGTGTATTGCTCGGCCATAAAGAGAGAAAGATCTTGAGCAGTTTGATTGTAGAGGAGAATCGATTCAAGCAGCGGGTATGGATACGAGGTTGTCGCCCGAAGGAAGAAGAAATATTTCAATTCACTATGGTTCAGAGGGTTGGCGGCTCGTGGGATGGGTATTGGCTTACAGAAAGTGTGCTTAACGATGGAGATGCATTTAGTGGAGGCTTAGCCTACTAA

Protein sequence

MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFERFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYWLTESVLNDGDAFSGGLAY
Homology
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BLAST of CmaCh01G014910 vs. TrEMBL
Match: A0A0A0LED5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G878870 PE=4 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 6.3e-107
Identity = 189/204 (92.65%), Postives = 197/204 (96.57%), Query Frame = 1 

Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

[Close]
BLAST of CmaCh01G014910 vs. TrEMBL
Match: M5XH49_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015477mg PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.7e-83
Identity = 154/204 (75.49%), Postives = 177/204 (86.76%), Query Frame = 1 

Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSSLS  P S+ L   + F+  + K   VS+ +RFRASA+VPDFL ADW ++ KK P
Sbjct: 1   MSFCSSLSY-PNSLFLSKTKPFSAHI-KPPTVSLGTRFRASADVPDFLSADWLESRKKKP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+Q QLDAL+YND+P QDYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  FGPRLNFSAEEAVQHQLDALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHSTYRVLLGHKERK+LSSL VEENRFKQRVWIRG RP+EEEIFQFTMVQRVGG
Sbjct: 121 RFRRIFHHSTYRVLLGHKERKMLSSLFVEENRFKQRVWIRGSRPEEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+L+DGDAF+GGLAY
Sbjct: 181 SWDGYWLTESLLHDGDAFAGGLAY 202

[Close]
BLAST of CmaCh01G014910 vs. TrEMBL
Match: A0A067KMY0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07206 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.4e-82
Identity = 151/204 (74.02%), Postives = 177/204 (86.76%), Query Frame = 1 

Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSSLS  P S+SL+SK K     NK   V ++SR R SA+VPD+L ADW ++ +K P
Sbjct: 1   MSFCSSLSPPP-SLSLLSKSKPFNGDNKAAGVIVSSRIRGSADVPDYLSADWLESRRKRP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+Q QLDAL+YND+P  DYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  FGPRLNFSAEEAVQYQLDALKYNDQPRPDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHSTYRVLLGHKERKILSSL+V+ENRFKQRVW++G RP+EEEIFQFTMVQRVGG
Sbjct: 121 RFRRIFHHSTYRVLLGHKERKILSSLLVKENRFKQRVWVQGNRPEEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDG+AF+GGLAY
Sbjct: 181 SWDGYWLTESLLNDGNAFAGGLAY 203

[Close]
BLAST of CmaCh01G014910 vs. TrEMBL
Match: B9H9R6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26510g PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 9.2e-82
Identity = 151/204 (74.02%), Postives = 176/204 (86.27%), Query Frame = 1 

Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSS+S  P S+SL+SK   T+ +       + SRFRASA+VPDFL ADW ++ +K P
Sbjct: 1   MSFCSSIST-PQSLSLLSK---TKPIINGGDYKLGSRFRASADVPDFLSADWLESRRKKP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+  QLDAL+YND+P QDYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  FGPRLNFSAEEAVNCQLDALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHSTYRVLLGHKERKILSSL V+ENRFKQR+WIRG RP+EEEIFQFTMVQRVGG
Sbjct: 121 RFRRIFHHSTYRVLLGHKERKILSSLFVKENRFKQRIWIRGNRPEEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+L+DGDAF+GGLAY
Sbjct: 181 SWDGYWLTESLLHDGDAFAGGLAY 200

[Close]
BLAST of CmaCh01G014910 vs. TrEMBL
Match: D7SUM3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g04730 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.9e-80
Identity = 151/204 (74.02%), Postives = 177/204 (86.76%), Query Frame = 1 

Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSSLS+ P S+SL SK       +K V VS++SR RASA+VPDFL ADW ++ +K P
Sbjct: 1   MSFCSSLSS-PQSISLFSKPFHG---DKPVSVSLSSRIRASADVPDFLSADWLESRRKRP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+Q QLDAL+YND+P QDYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  FGPRLNFSAEEAVQYQLDALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHS+YRVLL H+ERKILSSL V+ENRFKQRVWIRG RP+EEEIFQFTM QRVGG
Sbjct: 121 RFRRIFHHSSYRVLLCHRERKILSSLWVKENRFKQRVWIRGTRPEEEEIFQFTMFQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+L+DGD+FSGG+AY
Sbjct: 181 SWDGYWLTESLLHDGDSFSGGVAY 200

[Close]
BLAST of CmaCh01G014910 vs. TAIR10
Match: AT2G25605.1 (AT2G25605.1 unknown protein)

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-75
Identity = 130/198 (65.66%), Postives = 162/198 (81.82%), Query Frame = 1 

Query: 7   LSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNPLGPSLH 66
           L + P+S+S   K       N +  ++ N    +S++VPDFL ADW ++ +K P GP L 
Sbjct: 8   LPSPPSSLSANVKH-----FNGYGRLNRNLVRASSSDVPDFLSADWLESRRKRPFGPRLD 67

Query: 67  FTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFERFRRVF 126
           F+AE+A++ QLDAL+YND P  DYGIEVMY+FAGF+P +RSTYFGPFFDLGQFERFRR+F
Sbjct: 68  FSAEDAVRHQLDALKYNDHPRDDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFERFRRIF 127

Query: 127 HHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGGSWDGYW 186
           HHS+YRVLLGHK+RK+LSSL VEENRFKQR+WI+G RP+EEEIF+FTM QR+GGSWDGYW
Sbjct: 128 HHSSYRVLLGHKDRKLLSSLFVEENRFKQRIWIQGNRPEEEEIFEFTMFQRIGGSWDGYW 187

Query: 187 LTESVLNDGDAFSGGLAY 205
           LTES+L+DGD FSGG+AY
Sbjct: 188 LTESLLHDGDVFSGGMAY 200

[Close]
BLAST of CmaCh01G014910 vs. NCBI nr
Match: gi|778687021|ref|XP_004136341.2| (PREDICTED: uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus])

HSP 1 Score: 394.8 bits (1013), Expect = 9.0e-107
Identity = 189/204 (92.65%), Postives = 197/204 (96.57%), Query Frame = 1 

Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

[Close]
BLAST of CmaCh01G014910 vs. NCBI nr
Match: gi|659132783|ref|XP_008466381.1| (PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo])

HSP 1 Score: 392.5 bits (1007), Expect = 4.5e-106
Identity = 188/204 (92.16%), Postives = 195/204 (95.59%), Query Frame = 1 

Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK V VSMNSRFR SAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPVTVSMNSRFRVSAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+LNDGDAFSGGLAY
Sbjct: 181 SWDGYWLTESLLNDGDAFSGGLAY 204

[Close]
BLAST of CmaCh01G014910 vs. NCBI nr
Match: gi|778687024|ref|XP_011652492.1| (PREDICTED: uncharacterized protein LOC101205248 isoform X2 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 8.5e-89
Identity = 162/176 (92.05%), Postives = 169/176 (96.02%), Query Frame = 1 

Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MSCCSSLSAAP+SMSLI+ RKFT SVNK +IVSMNSRFRASAEVPDFLPADWH AHKK+P
Sbjct: 1   MSCCSSLSAAPSSMSLITNRKFTSSVNKPLIVSMNSRFRASAEVPDFLPADWHDAHKKDP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
           +GP LHFTAEEAIQ QLDALRYNDRPHQDYGIEVMYQFAGF+PL+RSTYFGPFFDLGQFE
Sbjct: 61  IGPRLHFTAEEAIQHQLDALRYNDRPHQDYGIEVMYQFAGFDPLRRSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQ 177
           RFRRVFHHSTYRVLLGHKERKILSSL VEENRFKQRVWIRGCRPKEEEIFQFTMVQ
Sbjct: 121 RFRRVFHHSTYRVLLGHKERKILSSLFVEENRFKQRVWIRGCRPKEEEIFQFTMVQ 176

[Close]
BLAST of CmaCh01G014910 vs. NCBI nr
Match: gi|645226105|ref|XP_008219885.1| (PREDICTED: uncharacterized protein LOC103320051 [Prunus mume])

HSP 1 Score: 317.4 bits (812), Expect = 1.8e-83
Identity = 155/204 (75.98%), Postives = 178/204 (87.25%), Query Frame = 1 

Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSSLS  P S+ L   + F+  + K   VS++SRFRASA+VPDFL ADW ++ KK P
Sbjct: 1   MSFCSSLSY-PNSLFLSKTKPFSVDI-KPPTVSLSSRFRASADVPDFLSADWLESRKKKP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+Q QLDAL+YND+P QDYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  SGPRLNFSAEEAVQHQLDALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHSTYRVLLGHKERK+LSSL VEENRFKQRVWIRG RP+EEEIFQFTMVQRVGG
Sbjct: 121 RFRRIFHHSTYRVLLGHKERKMLSSLFVEENRFKQRVWIRGSRPEEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+L+DGDAF+GGLAY
Sbjct: 181 SWDGYWLTESLLHDGDAFAGGLAY 202

[Close]
BLAST of CmaCh01G014910 vs. NCBI nr
Match: gi|596222098|ref|XP_007224080.1| (hypothetical protein PRUPE_ppa015477mg [Prunus persica])

HSP 1 Score: 317.0 bits (811), Expect = 2.4e-83
Identity = 154/204 (75.49%), Postives = 177/204 (86.76%), Query Frame = 1 

Query: 1   MSCCSSLSAAPTSMSLISKRKFTRSVNKHVIVSMNSRFRASAEVPDFLPADWHQAHKKNP 60
           MS CSSLS  P S+ L   + F+  + K   VS+ +RFRASA+VPDFL ADW ++ KK P
Sbjct: 1   MSFCSSLSY-PNSLFLSKTKPFSAHI-KPPTVSLGTRFRASADVPDFLSADWLESRKKKP 60

Query: 61  LGPSLHFTAEEAIQRQLDALRYNDRPHQDYGIEVMYQFAGFNPLQRSTYFGPFFDLGQFE 120
            GP L+F+AEEA+Q QLDAL+YND+P QDYGIEVMY+FAGF+P +RSTYFGPFFDLGQFE
Sbjct: 61  FGPRLNFSAEEAVQHQLDALKYNDQPRQDYGIEVMYRFAGFDPFERSTYFGPFFDLGQFE 120

Query: 121 RFRRVFHHSTYRVLLGHKERKILSSLIVEENRFKQRVWIRGCRPKEEEIFQFTMVQRVGG 180
           RFRR+FHHSTYRVLLGHKERK+LSSL VEENRFKQRVWIRG RP+EEEIFQFTMVQRVGG
Sbjct: 121 RFRRIFHHSTYRVLLGHKERKMLSSLFVEENRFKQRVWIRGSRPEEEEIFQFTMVQRVGG 180

Query: 181 SWDGYWLTESVLNDGDAFSGGLAY 205
           SWDGYWLTES+L+DGDAF+GGLAY
Sbjct: 181 SWDGYWLTESLLHDGDAFAGGLAY 202

The following BLAST results are available for this feature:
BLAST of CmaCh01G014910 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh01G014910 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LED5_CUCSA6.3e-10792.65Uncharacterized protein OS=Cucumis sativus GN=Csa_3G878870 PE=4 SV=1[more]
M5XH49_PRUPE1.7e-8375.49Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015477mg PE=4 SV=1[more]
A0A067KMY0_JATCU2.4e-8274.02Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07206 PE=4 SV=1[more]
B9H9R6_POPTR9.2e-8274.02Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s26510g PE=4 SV=1[more]
D7SUM3_VITVI2.9e-8074.02Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g04730 PE=4 SV=... [more]
BLAST of CmaCh01G014910 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G25605.11.1e-7565.66 unknown protein[more]
BLAST of CmaCh01G014910 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778687021|ref|XP_004136341.2|9.0e-10792.65PREDICTED: uncharacterized protein LOC101205248 isoform X1 [Cucumis sativus][more]
gi|659132783|ref|XP_008466381.1|4.5e-10692.16PREDICTED: uncharacterized protein LOC103503805 [Cucumis melo][more]
gi|778687024|ref|XP_011652492.1|8.5e-8992.05PREDICTED: uncharacterized protein LOC101205248 isoform X2 [Cucumis sativus][more]
gi|645226105|ref|XP_008219885.1|1.8e-8375.98PREDICTED: uncharacterized protein LOC103320051 [Prunus mume][more]
gi|596222098|ref|XP_007224080.1|2.4e-8375.49hypothetical protein PRUPE_ppa015477mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005730 nucleolus
cellular_component GO:0005575 cellular_component
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G014910.1CmaCh01G014910.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35716FAMILY NOT NAMEDcoord: 34..204
score: 2.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G014910Cucsa.310520Cucumber (Gy14) v1cgycmaB0865
CmaCh01G014910Csa3G878870Cucumber (Chinese Long) v2cmacuB456
CmaCh01G014910MELO3C003678Melon (DHL92) v3.5.1cmameB418
CmaCh01G014910CSPI03G44140Wild cucumber (PI 183967)cmacpiB459
CmaCh01G014910CmoCh01G015450Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G014910Lsi04G021500Bottle gourd (USVL1VR-Ls)cmalsiB433
CmaCh01G014910Cp4.1LG02g04060Cucurbita pepo (Zucchini)cmacpeB490
CmaCh01G014910MELO3C003678.2Melon (DHL92) v3.6.1cmamedB481
CmaCh01G014910CsaV3_3G046600Cucumber (Chinese Long) v3cmacucB0548
CmaCh01G014910Bhi09G001953Wax gourdcmawgoB0622
CmaCh01G014910CsGy3G041630Cucumber (Gy14) v2cgybcmaB369
CmaCh01G014910Carg00438Silver-seed gourdcarcmaB0947
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G014910Cucumber (Chinese Long) v3cmacucB0531
CmaCh01G014910Cucumber (Chinese Long) v3cmacucB0535
CmaCh01G014910Cucumber (Chinese Long) v3cmacucB0559
CmaCh01G014910Watermelon (97103) v2cmawmbB476
CmaCh01G014910Watermelon (97103) v2cmawmbB482
CmaCh01G014910Watermelon (97103) v2cmawmbB507
CmaCh01G014910Wax gourdcmawgoB0627
CmaCh01G014910Cucurbita maxima (Rimu)cmacmaB044
CmaCh01G014910Cucurbita maxima (Rimu)cmacmaB183
CmaCh01G014910Cucurbita maxima (Rimu)cmacmaB434
CmaCh01G014910Cucumber (Gy14) v1cgycmaB0457
CmaCh01G014910Cucumber (Gy14) v1cgycmaB0756
CmaCh01G014910Cucumber (Gy14) v1cgycmaB0863
CmaCh01G014910Cucurbita moschata (Rifu)cmacmoB431
CmaCh01G014910Cucurbita moschata (Rifu)cmacmoB455
CmaCh01G014910Wild cucumber (PI 183967)cmacpiB446
CmaCh01G014910Wild cucumber (PI 183967)cmacpiB448
CmaCh01G014910Wild cucumber (PI 183967)cmacpiB472
CmaCh01G014910Cucumber (Chinese Long) v2cmacuB443
CmaCh01G014910Cucumber (Chinese Long) v2cmacuB445
CmaCh01G014910Cucumber (Chinese Long) v2cmacuB469
CmaCh01G014910Melon (DHL92) v3.5.1cmameB411
CmaCh01G014910Melon (DHL92) v3.5.1cmameB446
CmaCh01G014910Watermelon (Charleston Gray)cmawcgB409
CmaCh01G014910Watermelon (Charleston Gray)cmawcgB414
CmaCh01G014910Watermelon (Charleston Gray)cmawcgB438
CmaCh01G014910Watermelon (97103) v1cmawmB425
CmaCh01G014910Watermelon (97103) v1cmawmB436
CmaCh01G014910Watermelon (97103) v1cmawmB443
CmaCh01G014910Cucurbita pepo (Zucchini)cmacpeB502
CmaCh01G014910Bottle gourd (USVL1VR-Ls)cmalsiB430
CmaCh01G014910Bottle gourd (USVL1VR-Ls)cmalsiB460
CmaCh01G014910Cucumber (Gy14) v2cgybcmaB207
CmaCh01G014910Cucumber (Gy14) v2cgybcmaB508
CmaCh01G014910Melon (DHL92) v3.6.1cmamedB474
CmaCh01G014910Silver-seed gourdcarcmaB0186
CmaCh01G014910Silver-seed gourdcarcmaB0894
CmaCh01G014910Silver-seed gourdcarcmaB1353