Cla017443 (gene) Watermelon (97103) v1

Overview
NameCla017443
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRNA-directed DNA polymerase (Reverse transcriptase) (AHRD V1 ***- A2Q1A3_MEDTR)
LocationChr10 : 22574850 .. 22575269 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTTGAACTATGATCATGTTAAGGTGAGTGAGTGGGCAAAGCAAGTAGGGTGTGAGCTGCAGGACTTTCCAACGTCTTACTCGGGGCTTCCTCTTGGAGATAATCCAAGGCAAATATCTTCTTGGAGACCTAGAGGACGAGGTGAGAAAAGAAGAAGCTTTTTCTCAAAGGGAGGGAAACTTACCCTAATCCAATCGGTTTTAAGCGGTATTTCCATTTATTTGTTTTTCTTCCTCTTTCAAGCCTTGTGTTCAATGTGTAAGATCTTGGAGAAGCTTCTGAGCGACTTTATGTGGGAAGGTGTAGAGGAAGGCAAAGGAGCCCATTTGGTGAACCGAGAGATCATTGGGAAACCCATTCACCTAGGAGGTTTGAAACTAGAGAATATAAGCATCCAGGGTGTTATTGGTAAATGA

mRNA sequence

ATGGGCTTGAACTATGATCATGTTAAGGTGAGTGAGTGGGCAAAGCAAGTAGGGTGTGAGCTGCAGGACTTTCCAACGTCTTACTCGGGGCTTCCTCTTGGAGATAATCCAAGGCAAATATCTTCTTGGAGACCTAGAGGACGAGGTGAGAAAAGAAGAAGCTTTTTCTCAAAGGGAGGGAAACTTACCCTAATCCAATCGGTTTTAAGCGGTATTTCCATTTATTTGTTTTTCTTCCTCTTTCAAGCCTTGTGTTCAATGTGTAAGATCTTGGAGAAGCTTCTGAGCGACTTTATGTGGGAAGGTGTAGAGGAAGGCAAAGGAGCCCATTTGGTGAACCGAGAGATCATTGGGAAACCCATTCACCTAGGAGGTTTGAAACTAGAGAATATAAGCATCCAGGGTGTTATTGGTAAATGA

Coding sequence (CDS)

ATGGGCTTGAACTATGATCATGTTAAGGTGAGTGAGTGGGCAAAGCAAGTAGGGTGTGAGCTGCAGGACTTTCCAACGTCTTACTCGGGGCTTCCTCTTGGAGATAATCCAAGGCAAATATCTTCTTGGAGACCTAGAGGACGAGGTGAGAAAAGAAGAAGCTTTTTCTCAAAGGGAGGGAAACTTACCCTAATCCAATCGGTTTTAAGCGGTATTTCCATTTATTTGTTTTTCTTCCTCTTTCAAGCCTTGTGTTCAATGTGTAAGATCTTGGAGAAGCTTCTGAGCGACTTTATGTGGGAAGGTGTAGAGGAAGGCAAAGGAGCCCATTTGGTGAACCGAGAGATCATTGGGAAACCCATTCACCTAGGAGGTTTGAAACTAGAGAATATAAGCATCCAGGGTGTTATTGGTAAATGA

Protein sequence

MGLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRPRGRGEKRRSFFSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNREIIGKPIHLGGLKLENISIQGVIGK
Homology
[Close]
BLAST of Cla017443 vs. TrEMBL
Match: M5VS59_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.4e-18
Identity = 56/137 (40.88%), Postives = 82/137 (59.85%), Query Frame = 1 

Query: 1   MGLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRP-RGRGEKR-----RS 60
           +G+N+    ++  A   GCE+  +P  Y GLPLG NPR ++ W P   + EKR     R+
Sbjct: 713 LGINFSTEALNNMAGSWGCEVGCWPMVYLGLPLGGNPRALNFWNPVMDKVEKRLQKWKRA 772

Query: 61  FFSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNR 120
             SKGG+LTLIQ+VLS I  Y +  LF+    +   +E+L+ +F+WEG+EEGK  HLV  
Sbjct: 773 CLSKGGRLTLIQAVLSSIPSY-YMSLFKMPIGVAAKVEQLMRNFLWEGLEEGKNCHLVRW 832

Query: 121 EIIGKPIHLGGLKLENI 132
           E + K    GGL + ++
Sbjct: 833 ERVTKSKEEGGLGIGSL 848

[Close]
BLAST of Cla017443 vs. TrEMBL
Match: A5ADL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017151 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-18
Identity = 53/141 (37.59%), Postives = 79/141 (56.03%), Query Frame = 1 

Query: 2   GLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRPRGRGEKRR------SF 61
           G+N D   +S  A+ + C+   +P  Y GLPLG NPR    W P      RR      ++
Sbjct: 504 GINLDQAHISRLAETLECKASGWPILYLGLPLGGNPRAGGFWDPMIERISRRLDGWQKAY 563

Query: 62  FSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNRE 121
            S GG++TLIQS L+ +  Y +  LF+   S+   +E+L  DF+W G+ EGK  HLV  +
Sbjct: 564 LSFGGRITLIQSCLTHMPCY-YLSLFKLPASVAAKIERLQRDFLWSGIGEGKNDHLVRWD 623

Query: 122 IIGKPIHLGGLKLENISIQGV 137
           ++ KP  +GGL   NIS++ +
Sbjct: 624 VVCKPKEIGGLGFGNISLRNL 643

[Close]
BLAST of Cla017443 vs. TrEMBL
Match: A5BUT3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026823 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 56/137 (40.88%), Postives = 76/137 (55.47%), Query Frame = 1 

Query: 2    GLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRPRGRGEKRR------SF 61
            G+N D   +S  A+ + C+   +P  Y GLPLG NP+    W P       R      ++
Sbjct: 1354 GINLDQAHLSRLAEMLDCKASGWPILYLGLPLGGNPKACGFWDPVVERISSRLDGWQKAY 1413

Query: 62   FSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNRE 121
             S GG++TLIQS LS +  Y F  LF+   S+   +E+L  DF+W GV EGK  HLV  +
Sbjct: 1414 LSXGGRITLIQSCLSHLPSY-FLSLFKMPASVAAKIERLQRDFLWSGVGEGKRDHLVRWD 1473

Query: 122  IIGKPIHLGGLKLENIS 133
            I+ KP  +GGL L NIS
Sbjct: 1474 IVCKPKTIGGLGLGNIS 1489

[Close]
BLAST of Cla017443 vs. TrEMBL
Match: A5BV95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026478 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 55/141 (39.01%), Postives = 77/141 (54.61%), Query Frame = 1 

Query: 2    GLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRPRGRGEKRR------SF 61
            G+N     +S  A    C + ++P SY GLPLG NP+ I  W P      RR      ++
Sbjct: 1350 GINTRQELLSSLASVFDCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAY 1409

Query: 62   FSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNRE 121
             S GG++TLIQS LS I  Y F  LF+   S+   +EK+  +F+W G  EGK  HLV  E
Sbjct: 1410 LSLGGRITLIQSCLSHIPSY-FLSLFKIPASIASKIEKMQRNFLWSGAGEGKKDHLVRWE 1469

Query: 122  IIGKPIHLGGLKLENISIQGV 137
            ++ +P  LGGL    IS++ +
Sbjct: 1470 VVSRPKELGGLGFGKISLRNI 1489

[Close]
BLAST of Cla017443 vs. TrEMBL
Match: A5BQI4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030910 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.1e-17
Identity = 55/141 (39.01%), Postives = 77/141 (54.61%), Query Frame = 1 

Query: 2   GLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRPRGRGEKRR------SF 61
           G+N     +S  A    C + ++P SY GLPLG NP+ I  W P      RR      ++
Sbjct: 385 GINTRQELLSSLASVFDCRVSEWPLSYLGLPLGGNPKTIGFWDPVVERISRRLDGWKKAY 444

Query: 62  FSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNRE 121
            S GG++TLIQS LS I  Y F  LF+   S+   +EK+  +F+W G  EGK  HLV  E
Sbjct: 445 LSLGGRITLIQSCLSHIPSY-FLSLFKIPASVASKIEKMQRNFLWSGAGEGKKDHLVRWE 504

Query: 122 IIGKPIHLGGLKLENISIQGV 137
           ++ +P  LGGL    IS++ +
Sbjct: 505 VVSRPKELGGLGFGKISLRNI 524

[Close]
BLAST of Cla017443 vs. NCBI nr
Match: gi|657996200|ref|XP_008390463.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 107.1 bits (266), Expect = 2.6e-20
Identity = 62/139 (44.60%), Postives = 81/139 (58.27%), Query Frame = 1 

Query: 2   GLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRPRGRGEKRR------SF 61
           G+N +  K++  A   GCE+  +P  Y GLPLG  PR I  W P     +RR      +F
Sbjct: 69  GINSESEKLNRMAVSWGCEVGCWPIKYLGLPLGGRPRAIKFWDPVVETMERRLQSWKKAF 128

Query: 62  FSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNRE 121
            S+GGKLTLIQSVL  + IY +  LF+  C +   LEKL+  F+WEGVEEGK  HLV  E
Sbjct: 129 LSRGGKLTLIQSVLGSLPIY-YMSLFKIPCWVRGRLEKLMKGFLWEGVEEGKKTHLVKWE 188

Query: 122 IIGKPIHLGGLKLENISIQ 135
           ++ K    GGL + N+  Q
Sbjct: 189 LVTKNKEEGGLGVGNLRNQ 206

[Close]
BLAST of Cla017443 vs. NCBI nr
Match: gi|694414464|ref|XP_009335445.1| (PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri])

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 62/139 (44.60%), Postives = 81/139 (58.27%), Query Frame = 1 

Query: 2   GLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRPR-GRGEKR-----RSF 61
           G+N D  K+   A   GCE+  +P  Y GLPLG  P+ +  W P   + EKR     ++F
Sbjct: 548 GINSDCEKLKGMADSWGCEVGSWPIKYLGLPLGGRPKALMFWDPVVEKMEKRLQSWKKAF 607

Query: 62  FSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNRE 121
            SKGG+LTLIQ VL  + IY +  LF+  C +   LEKL+  F+WEGVEEGK  HLV  E
Sbjct: 608 LSKGGRLTLIQFVLGSLPIY-YMSLFKIPCGVIGRLEKLMKGFLWEGVEEGKKNHLVKWE 667

Query: 122 IIGKPIHLGGLKLENISIQ 135
           I+ K    GGL + N+  Q
Sbjct: 668 IVIKSKEEGGLCVGNLRNQ 685

[Close]
BLAST of Cla017443 vs. NCBI nr
Match: gi|658048925|ref|XP_008360144.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 104.4 bits (259), Expect = 1.7e-19
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1 

Query: 2   GLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRPR-GRGEKR-----RSF 61
           G+N D  K++  A   GCE+  +P  Y GLPLG  PR +  W P   + EKR     ++F
Sbjct: 253 GINSDCEKLNRLADSWGCEVGSWPIKYLGLPLGGRPRALKFWDPXVDKMEKRLQSWKKAF 312

Query: 62  FSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNRE 121
            S+GG+LTLIQSVL  +  Y +  LF+  C +   LEKL+  F+WEGVEEGK  +LV  E
Sbjct: 313 LSRGGRLTLIQSVLGSLPTY-YMSLFKMPCGVIGRLEKLMKGFLWEGVEEGKKNNLVKWE 372

Query: 122 IIGKPIHLGGLKLENI 132
           I+ K    GGL + N+
Sbjct: 373 IVIKSKEEGGLGVGNL 387

[Close]
BLAST of Cla017443 vs. NCBI nr
Match: gi|658030603|ref|XP_008350747.1| (PREDICTED: uncharacterized protein LOC103414113 [Malus domestica])

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1 

Query: 2    GLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRPR-GRGEKR-----RSF 61
            G+N D  K++  A   GCE+  +P  Y GLPLG  PR +  W P   + EKR     ++F
Sbjct: 1276 GINSDCEKLNRLADSWGCEVGSWPIKYLGLPLGGRPRALKFWDPVVDKMEKRLQSWKKAF 1335

Query: 62   FSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNRE 121
             S+GG+LTLIQSVL  +  Y +  LF+  C +   LEKL+  F+WEGVEEGK  +LV  E
Sbjct: 1336 LSRGGRLTLIQSVLGSLPTY-YMSLFKMPCGVIGRLEKLMKGFLWEGVEEGKKNNLVKWE 1395

Query: 122  IIGKPIHLGGLKLENI 132
            I+ K    GGL + N+
Sbjct: 1396 IVIKSKEEGGLGVGNL 1410

[Close]
BLAST of Cla017443 vs. NCBI nr
Match: gi|658029332|ref|XP_008350117.1| (PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica])

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1 

Query: 2   GLNYDHVKVSEWAKQVGCELQDFPTSYSGLPLGDNPRQISSWRPR-GRGEKR-----RSF 61
           G+N D  K++  A   GCE+  +P  Y GLPLG  PR +  W P   + EKR     ++F
Sbjct: 47  GINSDCEKLNRLADSWGCEVGSWPIKYLGLPLGGRPRALKFWDPVVDKMEKRLQSWKKAF 106

Query: 62  FSKGGKLTLIQSVLSGISIYLFFFLFQALCSMCKILEKLLSDFMWEGVEEGKGAHLVNRE 121
            S+GG+LTLIQSVL  +  Y +  LF+  C +   LEKL+  F+WEGVEEGK  +LV  E
Sbjct: 107 LSRGGRLTLIQSVLGSLPTY-YMSLFKMPCGVIGRLEKLMKGFLWEGVEEGKKNNLVKWE 166

Query: 122 IIGKPIHLGGLKLENI 132
           I+ K    GGL + N+
Sbjct: 167 IVIKSKEEGGLGVGNL 181

The following BLAST results are available for this feature:
BLAST of Cla017443 vs. TrEMBL
Match NameE-valueIdentityDescription
M5VS59_PRUPE6.4e-1840.88Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa016504mg PE=4 S... [more]
A5ADL9_VITVI8.3e-1837.59Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017151 PE=4 SV=1[more]
A5BUT3_VITVI1.1e-1740.88Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026823 PE=4 SV=1[more]
A5BV95_VITVI1.1e-1739.01Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026478 PE=4 SV=1[more]
A5BQI4_VITVI1.1e-1739.01Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030910 PE=4 SV=1[more]
BLAST of Cla017443 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|657996200|ref|XP_008390463.1|2.6e-2044.60PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|694414464|ref|XP_009335445.1|1.7e-1944.60PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri][more]
gi|658048925|ref|XP_008360144.1|1.7e-1944.12PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
gi|658030603|ref|XP_008350747.1|2.8e-1944.12PREDICTED: uncharacterized protein LOC103414113 [Malus domestica][more]
gi|658029332|ref|XP_008350117.1|2.8e-1944.12PREDICTED: putative ribonuclease H protein At1g65750 [Malus domestica][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU13655watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU38627watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU44895watermelon EST collection version 2.0transcribed_cluster
WMU57764watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla017443Cla017443.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU38627WMU38627transcribed_cluster
WMU44895WMU44895transcribed_cluster
WMU57764WMU57764transcribed_cluster
WMU13655WMU13655transcribed_cluster