Cla013714 (gene) Watermelon (97103) v1

NameCla013714
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionProtein SEC6 (AHRD V1 *-*- F4IA34_ARATH)
LocationChr8 : 17374477 .. 17376811 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTTGAGGATCTCGGTATCGAAGCAAAGGAAGCAGCTGTACGCGAGGTTGCCAAGCTTCTACCGATTTTGGAGCTTCTGCAGTCAATTATTAGTTCGATCAAGGCTGATTACATTACTCGTCAGCAGGTACTTGTTTTCGACGAATTTCTATCACATTCTTCAACTCCTTTGATCTTCTGCAAAACATGTCTCAATTTTCTCTTGCTTAATTTTTTGTTCCAAACTTTTGTGCTGGAGCTTTGCAGGTGCAGAGCTAATAATTCTACTTGTTTTTATGCTTTGTTGGTAGGATGACAAATTTTTTATTTAGTTTAGTAAAAAAAAGTACCAGAATGCTGCATCATTACTTGTCTGGACAGTGATCCTAGTCGGTCTAAAAACTTCTCAATTTCTCACCATTTCTTCCTAGGAACATATATAGTCTACAAAAAATTCAGGAGTTGGTGCTTTTAAATAGTTGACAAATGAAATGATGTACATCCTTGATAATCAAGAATAAAAACCACTGCAGCAACTAAAGCCTGAATGCTGGTCAGGCTTTAACTATAACACTTGTCCGTGTTATCAATTTCGGATCTCACTTAATGTTTCTGGTAATTGAGTCTGGATGTTGCACACCACATCACACCACAAGTCAGGTACTCCTCTTAATGTGAACTTCAGAACATAAATTCCCCCATTTTCCTAATTTTTCTGCATAATTGGGGCATTTGATTAAATTTCTGGGTGCAAATGCAACATATGTATTATAGAAGATGGAAGCTCTGTAGTTTATTGTTGCAGTTAACAGCGTCAAAATAGATTTAGTTCAACTTCCCGCATAGTATTAGTCAATGGTACCGCTACTTAAAGTTGTTGATCCGAAAATACGAACCTATTTGAATTGACTAGAAAGAAAAATGTTCTTAAAAAAAGTCATTTTATTTAAACTCTTTTGATAAAAATTGTTTAAAATACACTTTGAGAGTGTTTCAAAAGTTGTTTCGACTGGTTCCCAAACACTTCGATCTTTTCCAAAATGACTTATTTTCAAAATTAAACATTGGAAAAGTTAAACCAAACACACCCTTCAACTGAAGTATAATTGCTTGTATTCTGATGCTGTATAGGCACAATTTCTATGTGTTTCTGTTTGTCTTATCTTTCTGTCAATCATATTGTGTTGGCCTTGTTTGTGGGGTTTACTGAACGCAATAGTTCTTTTTTTGTGATTTTGAATGTTGCTCATACTTCATTTATAGGCAAATGATGCACATCTCAGTACAATGGTTGCAGAGCAGGTACAACTGACAGCTTTTTCCCATAATATTTTAAGAGATATGCTGTCTCACCATTGTGTATTACCATATTTACTGTTTGGACCAAACGTTCTGAGATGCACTTGAAGATAAAGAAGCTTGTGTTGCTGAAAGAGTCTTGCTTTCCCAACATGAATGTAGGTTGAACAAGCACAAGCTGGCTGGCGTCACTTTCTTTATCTGGAAAGACAATAAATCAGCTTCGAGAAAACTTCATTTCAATCGAGAAGTATGAAAATAGATGCATTAGCAGTCAAATAATTTTTTGATTCAAGTATTTTTACAACTCAATTGCTATGTGCATTCAGGTTATGTCGAGAATGCCAAACATTAATAGAGAACCGCAATCAGATAAAGCTCCTTAGCAATGCAAGGAATAGCTTATTGACAACCTTGAAGGTTGGTCACCCTTCTCCGTAATTATAAATGTGATGTAGCTCTTCTATTTTTTGTTAGGATCCAATAATTTGGATTATAAAAGCTAACTATCAACTTTTCTTATAGCGAATTCTTACATATCCGGCATGAAATACTAAATCCAAAATCGATCCTCTCTCCTTAAGCTCAAGACCTTTTTAACTTTATTTATTTATCTATTTGTTTTTTCTCCATGGTGGTTAGCTGCACTTATACGGTTTTGTAGAACTAATGTTTGAGCCTTTGACTAGGATGTTGAGGGCATGATGCCCATATCTGTTGAAGCAGTTGAGGCGCGTGATTCTTTGAGTGATGATTCAGAGCTTATAAACACTTATGAGGTGAAGTGGTCTTGTTGTCGTTGTTAGGGTTGAAAAAGTTTTCTCATCATTTAGGACATCTATGCATTTGTCTTAAAAAATTGAACAATGTAGTATCTTCATGTAGCTCTTCATGCATTTATAATTTGGCCCTTATAGTCTTTCCTATTACATGCACACTTGTCACAGAGGCTAACCGCACTTGATGGAAAACGGAGGTCTGCTTTAGCAGCTGCAGCATCTCACAAAGAAAAGGTTGGAAGACTAAGGTATTTGTCCCAAGGTAATGATTGA

mRNA sequence

ATGATGGTTGAGGATCTCGGTATCGAAGCAAAGGAAGCAGCTGTACGCGAGGTTGCCAAGCTTCTACCGATTTTGGAGCTTCTGCAGTCAATTATTAGTTCGATCAAGGCTGATTACATTACTCGTCAGCAGGCAAATGATGCACATCTCAGTACAATGGTTGCAGAGCAGGATGTTGAGGGCATGATGCCCATATCTGTTGAAGCAGTTGAGGCGCGTGATTCTTTGAGTGATGATTCAGAGCTTATAAACACTTATGAGAGGCTAACCGCACTTGATGGAAAACGGAGGTCTGCTTTAGCAGCTGCAGCATCTCACAAAGAAAAGGTTGGAAGACTAAGGTATTTGTCCCAAGGTAATGATTGA

Coding sequence (CDS)

ATGATGGTTGAGGATCTCGGTATCGAAGCAAAGGAAGCAGCTGTACGCGAGGTTGCCAAGCTTCTACCGATTTTGGAGCTTCTGCAGTCAATTATTAGTTCGATCAAGGCTGATTACATTACTCGTCAGCAGGCAAATGATGCACATCTCAGTACAATGGTTGCAGAGCAGGATGTTGAGGGCATGATGCCCATATCTGTTGAAGCAGTTGAGGCGCGTGATTCTTTGAGTGATGATTCAGAGCTTATAAACACTTATGAGAGGCTAACCGCACTTGATGGAAAACGGAGGTCTGCTTTAGCAGCTGCAGCATCTCACAAAGAAAAGGTTGGAAGACTAAGGTATTTGTCCCAAGGTAATGATTGA

Protein sequence

MMVEDLGIEAKEAAVREVAKLLPILELLQSIISSIKADYITRQQANDAHLSTMVAEQDVEGMMPISVEAVEARDSLSDDSELINTYERLTALDGKRRSALAAAASHKEKVGRLRYLSQGND
BLAST of Cla013714 vs. Swiss-Prot
Match: SEC6_ARATH (Exocyst complex component SEC6 OS=Arabidopsis thaliana GN=SEC6 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 77/174 (44.25%), Postives = 86/174 (49.43%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSIISSIKADYITRQQANDAHLSTMVAEQ--- 60
           MMVEDLG+EAKEAAVREVAKLLP+ ELLQS ISSIKADYI RQQANDA LSTMVAEQ   
Sbjct: 1   MMVEDLGVEAKEAAVREVAKLLPLPELLQS-ISSIKADYIARQQANDAQLSTMVAEQVEQ 60

Query: 61  ---DVEGMMPISVEAVEARDSL-------SDDSELINTYER------------------- 115
               +E +        E RD+         +   LI+ +++                   
Sbjct: 61  AQAGLESLSSSEKTIYELRDNFISIDKLCQECQTLIDNHDQIKLLSNARNNLNKTLKDVE 120

BLAST of Cla013714 vs. TrEMBL
Match: A0A165Z0L4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013169 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.3e-38
Identity = 98/141 (69.50%), Postives = 105/141 (74.47%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSIISSIKADYITRQQANDAHLSTMVAEQ--- 60
           MMVEDL IEAKEAAVREVAKLL + ELLQSI +SIKADY+TRQQANDA LSTMVAEQ   
Sbjct: 1   MMVEDLAIEAKEAAVREVAKLLTLPELLQSI-ASIKADYLTRQQANDAQLSTMVAEQECQ 60

Query: 61  ------------------------DVEGMMPISVEAVEARDSLSDDSELINTYERLTALD 115
                                   DVEGMM ISVEA EARDSLSDD ELI+TYERLTALD
Sbjct: 61  TLIENHDQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLSDDKELISTYERLTALD 120

BLAST of Cla013714 vs. TrEMBL
Match: A0A0A0K9G1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052630 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-26
Identity = 84/173 (48.55%), Postives = 98/173 (56.65%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSI----------------------------- 60
           MMVEDLGIEAKEAAVREVAKLLP+ ELLQSI                             
Sbjct: 31  MMVEDLGIEAKEAAVREVAKLLPLPELLQSISSIKADYITRQQANDAQLSTMVAEQVEQA 90

Query: 61  -------------ISSIKADYITRQQA-----------------NDAHLSTMVAEQDVEG 115
                        I  ++ ++I+ ++                  ++A  + +   +DVEG
Sbjct: 91  QAGLESLSLSEKTIDQLRENFISIEKLCQECQTLIENHDQIKLLSNARNNLLTTLKDVEG 150

BLAST of Cla013714 vs. TrEMBL
Match: M5X9W4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001849mg PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 9.4e-26
Identity = 81/173 (46.82%), Postives = 98/173 (56.65%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSI----------------------------- 60
           MMVEDLG+EAKE+AVREVAKLLP+ ELLQSI                             
Sbjct: 1   MMVEDLGVEAKESAVREVAKLLPLPELLQSIASVKADYIARQQANDAQLSTMVAEQVEQA 60

Query: 61  -------------ISSIKADYITRQQA-----------------NDAHLSTMVAEQDVEG 115
                        I+ ++ ++++ ++                  ++A  +     +DVEG
Sbjct: 61  QAGLESLSLSQKSINQLRENFVSIEKLCQECQTLIENHDKIKLLSNARNNLNTTLKDVEG 120

BLAST of Cla013714 vs. TrEMBL
Match: A0A0L9VS90_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g077500 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.1e-25
Identity = 78/173 (45.09%), Postives = 97/173 (56.07%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSI----------------------------- 60
           MM EDLG+EAKEAAVREVAKLLP+ +LLQSI                             
Sbjct: 1   MMAEDLGVEAKEAAVREVAKLLPLPDLLQSISSIKADYISRQQANDAQLSTMVAEQVEQS 60

Query: 61  -------------ISSIKADYITRQQA-----------------NDAHLSTMVAEQDVEG 115
                        I+ ++ ++++ ++                  ++A  +     +DVEG
Sbjct: 61  QAGLKSLSLSENTINQLRENFVSIEKLCQESQTLIDNHDQIKLLSNARNNLNTTLKDVEG 120

BLAST of Cla013714 vs. TrEMBL
Match: B9IQN3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11790g PE=4 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 8.0e-25
Identity = 80/173 (46.24%), Postives = 95/173 (54.91%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSI----------------------------- 60
           MM EDLGIEAKE AVREVAKLLP+ ELLQSI                             
Sbjct: 1   MMAEDLGIEAKETAVREVAKLLPLPELLQSIASIKADYIARQQANDAQLSTMVAEQVEQA 60

Query: 61  -------------ISSIKADYITRQQA-----------------NDAHLSTMVAEQDVEG 115
                        IS ++ ++I+ ++                  ++A  +     +DVEG
Sbjct: 61  QSGLESLALSQKTISQLRENFISIEKLCQECQTLIENHDQIKLLSNARNNLNTTLKDVEG 120

BLAST of Cla013714 vs. NCBI nr
Match: gi|1021041688|gb|KZM99469.1| (hypothetical protein DCAR_013169 [Daucus carota subsp. sativus])

HSP 1 Score: 164.9 bits (416), Expect = 9.0e-38
Identity = 98/141 (69.50%), Postives = 105/141 (74.47%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSIISSIKADYITRQQANDAHLSTMVAEQ--- 60
           MMVEDL IEAKEAAVREVAKLL + ELLQSI +SIKADY+TRQQANDA LSTMVAEQ   
Sbjct: 1   MMVEDLAIEAKEAAVREVAKLLTLPELLQSI-ASIKADYLTRQQANDAQLSTMVAEQECQ 60

Query: 61  ------------------------DVEGMMPISVEAVEARDSLSDDSELINTYERLTALD 115
                                   DVEGMM ISVEA EARDSLSDD ELI+TYERLTALD
Sbjct: 61  TLIENHDQIKLLSNARNNLNTTLKDVEGMMSISVEAAEARDSLSDDKELISTYERLTALD 120

BLAST of Cla013714 vs. NCBI nr
Match: gi|449446355|ref|XP_004140937.1| (PREDICTED: exocyst complex component SEC6 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-26
Identity = 84/173 (48.55%), Postives = 98/173 (56.65%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSI----------------------------- 60
           MMVEDLGIEAKEAAVREVAKLLP+ ELLQSI                             
Sbjct: 1   MMVEDLGIEAKEAAVREVAKLLPLPELLQSISSIKADYITRQQANDAQLSTMVAEQVEQA 60

Query: 61  -------------ISSIKADYITRQQA-----------------NDAHLSTMVAEQDVEG 115
                        I  ++ ++I+ ++                  ++A  + +   +DVEG
Sbjct: 61  QAGLESLSLSEKTIDQLRENFISIEKLCQECQTLIENHDQIKLLSNARNNLLTTLKDVEG 120

BLAST of Cla013714 vs. NCBI nr
Match: gi|700190884|gb|KGN46088.1| (hypothetical protein Csa_6G052630 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-26
Identity = 84/173 (48.55%), Postives = 98/173 (56.65%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSI----------------------------- 60
           MMVEDLGIEAKEAAVREVAKLLP+ ELLQSI                             
Sbjct: 31  MMVEDLGIEAKEAAVREVAKLLPLPELLQSISSIKADYITRQQANDAQLSTMVAEQVEQA 90

Query: 61  -------------ISSIKADYITRQQA-----------------NDAHLSTMVAEQDVEG 115
                        I  ++ ++I+ ++                  ++A  + +   +DVEG
Sbjct: 91  QAGLESLSLSEKTIDQLRENFISIEKLCQECQTLIENHDQIKLLSNARNNLLTTLKDVEG 150

BLAST of Cla013714 vs. NCBI nr
Match: gi|659113650|ref|XP_008456686.1| (PREDICTED: exocyst complex component SEC6 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.6e-26
Identity = 84/173 (48.55%), Postives = 98/173 (56.65%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSI----------------------------- 60
           MMVEDLGIEAKEAAVREVAKLLP+ ELLQSI                             
Sbjct: 1   MMVEDLGIEAKEAAVREVAKLLPLPELLQSISSIKADYITRQQANDAQLSTMVAEQVEQA 60

Query: 61  -------------ISSIKADYITRQQA-----------------NDAHLSTMVAEQDVEG 115
                        I  ++ ++I+ ++                  ++A  + +   +DVEG
Sbjct: 61  QAGLESLSLSEKTIDQLRENFISIEKLCQECQTLIENHDQIKLLSNARNNLLTTLKDVEG 120

BLAST of Cla013714 vs. NCBI nr
Match: gi|595914053|ref|XP_007214646.1| (hypothetical protein PRUPE_ppa001849mg [Prunus persica])

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-25
Identity = 81/173 (46.82%), Postives = 98/173 (56.65%), Query Frame = 1

Query: 1   MMVEDLGIEAKEAAVREVAKLLPILELLQSI----------------------------- 60
           MMVEDLG+EAKE+AVREVAKLLP+ ELLQSI                             
Sbjct: 1   MMVEDLGVEAKESAVREVAKLLPLPELLQSIASVKADYIARQQANDAQLSTMVAEQVEQA 60

Query: 61  -------------ISSIKADYITRQQA-----------------NDAHLSTMVAEQDVEG 115
                        I+ ++ ++++ ++                  ++A  +     +DVEG
Sbjct: 61  QAGLESLSLSQKSINQLRENFVSIEKLCQECQTLIENHDKIKLLSNARNNLNTTLKDVEG 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
SEC6_ARATH1.4e-1944.25Exocyst complex component SEC6 OS=Arabidopsis thaliana GN=SEC6 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A165Z0L4_DAUCA6.3e-3869.50Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013169 PE=4 SV=1[more]
A0A0A0K9G1_CUCSA1.1e-2648.55Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052630 PE=4 SV=1[more]
M5X9W4_PRUPE9.4e-2646.82Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001849mg PE=4 SV=1[more]
A0A0L9VS90_PHAAN6.1e-2545.09Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan11g077500 PE=4 SV=1[more]
B9IQN3_POPTR8.0e-2546.24Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s11790g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
gi|1021041688|gb|KZM99469.1|9.0e-3869.50hypothetical protein DCAR_013169 [Daucus carota subsp. sativus][more]
gi|449446355|ref|XP_004140937.1|1.6e-2648.55PREDICTED: exocyst complex component SEC6 [Cucumis sativus][more]
gi|700190884|gb|KGN46088.1|1.6e-2648.55hypothetical protein Csa_6G052630 [Cucumis sativus][more]
gi|659113650|ref|XP_008456686.1|1.6e-2648.55PREDICTED: exocyst complex component SEC6 [Cucumis melo][more]
gi|595914053|ref|XP_007214646.1|1.4e-2546.82hypothetical protein PRUPE_ppa001849mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010326EXOC3/Sec6
Vocabulary: Cellular Component
TermDefinition
GO:0000145exocyst
Vocabulary: Biological Process
TermDefinition
GO:0006887exocytosis
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006887 exocytosis
cellular_component GO:0000145 exocyst
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013714Cla013714.1mRNA


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010326Exocyst complex component Sec6PANTHERPTHR21292EXOCYST COMPLEX COMPONENT SEC6-RELATEDcoord: 1..61
score: 2.0

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla013714Cla97C08G150820Watermelon (97103) v2wmwmbB100
Cla013714ClCG08G008060Watermelon (Charleston Gray)wcgwmB400
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla013714Wax gourdwgowmB314
Cla013714Wax gourdwgowmB539
Cla013714Watermelon (97103) v1wmwmB040
Cla013714Watermelon (97103) v1wmwmB060
Cla013714Cucumber (Gy14) v1cgywmB290
Cla013714Cucumber (Gy14) v1cgywmB558
Cla013714Cucurbita maxima (Rimu)cmawmB258
Cla013714Cucurbita maxima (Rimu)cmawmB261
Cla013714Cucurbita maxima (Rimu)cmawmB667
Cla013714Cucurbita maxima (Rimu)cmawmB668
Cla013714Cucurbita moschata (Rifu)cmowmB248
Cla013714Cucurbita moschata (Rifu)cmowmB251
Cla013714Cucurbita moschata (Rifu)cmowmB357
Cla013714Cucurbita moschata (Rifu)cmowmB662
Cla013714Cucurbita moschata (Rifu)cmowmB663
Cla013714Wild cucumber (PI 183967)cpiwmB113
Cla013714Wild cucumber (PI 183967)cpiwmB387
Cla013714Melon (DHL92) v3.5.1mewmB047
Cla013714Melon (DHL92) v3.5.1mewmB308
Cla013714Watermelon (Charleston Gray)wcgwmB063
Cla013714Watermelon (Charleston Gray)wcgwmB274
Cla013714Cucumber (Chinese Long) v2cuwmB108
Cla013714Cucumber (Chinese Long) v2cuwmB380
Cla013714Cucurbita pepo (Zucchini)cpewmB023
Cla013714Cucurbita pepo (Zucchini)cpewmB171
Cla013714Cucurbita pepo (Zucchini)cpewmB173
Cla013714Cucurbita pepo (Zucchini)cpewmB394
Cla013714Cucurbita pepo (Zucchini)cpewmB395
Cla013714Bottle gourd (USVL1VR-Ls)lsiwmB248
Cla013714Bottle gourd (USVL1VR-Ls)lsiwmB289
Cla013714Bottle gourd (USVL1VR-Ls)lsiwmB475
Cla013714Cucumber (Gy14) v2cgybwmB106
Cla013714Cucumber (Gy14) v2cgybwmB352
Cla013714Melon (DHL92) v3.6.1medwmB048
Cla013714Melon (DHL92) v3.6.1medwmB302
Cla013714Silver-seed gourdcarwmB0252
Cla013714Silver-seed gourdcarwmB0682
Cla013714Silver-seed gourdcarwmB0838
Cla013714Cucumber (Chinese Long) v3cucwmB122
Cla013714Cucumber (Chinese Long) v3cucwmB404
Cla013714Watermelon (97103) v2wmwmbB092