Cla013502 (gene) Watermelon (97103) v1

Overview
NameCla013502
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionHeat stress transcription factor A3 (AHRD V1 *-*- D1M7W9_SOLLC); contains Interpro domain(s) IPR000232 Heat shock factor (HSF)-type, DNA-binding
LocationChr2 : 28694440 .. 28695449 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGCTCAGACGGAACCTCTGGCGGCGCTCCGCCGCCATTTCTGACCAAAACATATGAGATGGTGGATGATCCGATGACCAATTCCATCGTATCGTGGAGTCAAAGTGGTTTCAGCTTTGTGGTTTGGAACCCACCGGAATTCGCACAAGAACTACTTCCGATTTATTTCAAACACAACAATTTTTCTAGTTTCGTTCGTCAATTAAACACTTATGTAAGTTCAAACATCAATCTTCATTCCCCACCCCCCCCCTGTTTTACTCTGTTTTTAGTTAAAATCTTAAGAGCCAAATTCTGATGTCTCTGTTTTGATAGGGGTTTAGAAAAATCGATCGAGAACAATGGGAATTCGCGAACGAGGGGTTTGTAAGAGGACGAACCCATCTTCTAAAAAGCATCCATAGAAGAAAACCAATCTACAGCCATAGCCAGAGCAATAGCCATGGAAATGGAGCTCCATTATCAGAACAAGAAAGACAAGAACTCGAGCAAAAAATCAAAACCCTTCATCAAGAAAAGACCATTCTCCAATCCCAATTACAGAAACACGAAAACGAAAAAGAACAAATTGGGCTTCAAATTCAAACAATCTGCCAGCAATTATGGCGAATGGGGAATCAACAAAAGCAGCTAATTGGGATATTGGGAGCAGAGTTGCAGAAGCATCAGCAGAGCAAAAAGAGGAAAATGTGGAAAGTGAATGAGTTATTAGTTGAAGAATGGACAGAATTTGAGAGAGATGAGAAGAATAATATGAAGAAGAAGGTGAAGGTTCCGCCATTGGAGCTGATGGGGAAGCTGGAATTGTCATTGGGGTTGTGTGAGGATTTGCTTTGCAATGTGGCGCAGGTTCTGAGGGAAGGGAAGGAAATGGAAGTGAAAAAAGAAGGGGAAATGAGGAGTGGAGTGAATGATGTGTTTTGGGAACAATTCTTGACGGAGATTCCAGGGTCGTCCAAAGTTAGTGAAGTTTATTTAGATAGAAGGAACAATGTTGTAAGGTAG

mRNA sequence

ATGGATGGCTCAGACGGAACCTCTGGCGGCGCTCCGCCGCCATTTCTGACCAAAACATATGAGATGGTGGATGATCCGATGACCAATTCCATCGTATCGTGGAGTCAAAGTGGTTTCAGCTTTGTGGTTTGGAACCCACCGGAATTCGCACAAGAACTACTTCCGATTTATTTCAAACACAACAATTTTTCTAGTTTCGTTCGTCAATTAAACACTTATGGGTTTAGAAAAATCGATCGAGAACAATGGGAATTCGCGAACGAGGGGTTTGTAAGAGGACGAACCCATCTTCTAAAAAGCATCCATAGAAGAAAACCAATCTACAGCCATAGCCAGAGCAATAGCCATGGAAATGGAGCTCCATTATCAGAACAAGAAAGACAAGAACTCGAGCAAAAAATCAAAACCCTTCATCAAGAAAAGACCATTCTCCAATCCCAATTACAGAAACACGAAAACGAAAAAGAACAAATTGGGCTTCAAATTCAAACAATCTGCCAGCAATTATGGCGAATGGGGAATCAACAAAAGCAGCTAATTGGGATATTGGGAGCAGAGTTGCAGAAGCATCAGCAGAGCAAAAAGAGGAAAATGTGGAAAGTGAATGAGTTATTAGTTGAAGAATGGACAGAATTTGAGAGAGATGAGAAGAATAATATGAAGAAGAAGGTGAAGGTTCCGCCATTGGAGCTGATGGGGAAGCTGGAATTGTCATTGGGGTTGTGTGAGGATTTGCTTTGCAATGTGGCGCAGGTTCTGAGGGAAGGGAAGGAAATGGAAGTGAAAAAAGAAGGGGAAATGAGGAGTGGAGTGAATGATGTGTTTTGGGAACAATTCTTGACGGAGATTCCAGGGTCGTCCAAAGTTAGTGAAGTTTATTTAGATAGAAGGAACAATGTTGTAAGGTAG

Coding sequence (CDS)

ATGGATGGCTCAGACGGAACCTCTGGCGGCGCTCCGCCGCCATTTCTGACCAAAACATATGAGATGGTGGATGATCCGATGACCAATTCCATCGTATCGTGGAGTCAAAGTGGTTTCAGCTTTGTGGTTTGGAACCCACCGGAATTCGCACAAGAACTACTTCCGATTTATTTCAAACACAACAATTTTTCTAGTTTCGTTCGTCAATTAAACACTTATGGGTTTAGAAAAATCGATCGAGAACAATGGGAATTCGCGAACGAGGGGTTTGTAAGAGGACGAACCCATCTTCTAAAAAGCATCCATAGAAGAAAACCAATCTACAGCCATAGCCAGAGCAATAGCCATGGAAATGGAGCTCCATTATCAGAACAAGAAAGACAAGAACTCGAGCAAAAAATCAAAACCCTTCATCAAGAAAAGACCATTCTCCAATCCCAATTACAGAAACACGAAAACGAAAAAGAACAAATTGGGCTTCAAATTCAAACAATCTGCCAGCAATTATGGCGAATGGGGAATCAACAAAAGCAGCTAATTGGGATATTGGGAGCAGAGTTGCAGAAGCATCAGCAGAGCAAAAAGAGGAAAATGTGGAAAGTGAATGAGTTATTAGTTGAAGAATGGACAGAATTTGAGAGAGATGAGAAGAATAATATGAAGAAGAAGGTGAAGGTTCCGCCATTGGAGCTGATGGGGAAGCTGGAATTGTCATTGGGGTTGTGTGAGGATTTGCTTTGCAATGTGGCGCAGGTTCTGAGGGAAGGGAAGGAAATGGAAGTGAAAAAAGAAGGGGAAATGAGGAGTGGAGTGAATGATGTGTTTTGGGAACAATTCTTGACGGAGATTCCAGGGTCGTCCAAAGTTAGTGAAGTTTATTTAGATAGAAGGAACAATGTTGTAAGGTAG

Protein sequence

MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKHNNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGAPLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLIGILGAELQKHQQSKKRKMWKVNELLVEEWTEFERDEKNNMKKKVKVPPLELMGKLELSLGLCEDLLCNVAQVLREGKEMEVKKEGEMRSGVNDVFWEQFLTEIPGSSKVSEVYLDRRNNVVR
Homology
[Close]
BLAST of Cla013502 vs. Swiss-Prot
Match: HFA4D_ORYSJ (Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.8e-56
Identity = 117/229 (51.09%), Postives = 150/229 (65.50%), Query Frame = 1 

Query: 3   GSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKHNN 62
           G  G  GG PPPFL KTYEMV+D  TN +VSW   G SFVVWNP +F+++LLP YFKHNN
Sbjct: 9   GGGGGGGGGPPPFLIKTYEMVEDAATNHVVSWGPGGASFVVWNPLDFSRDLLPKYFKHNN 68

Query: 63  FSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGAPL 122
           FSSF+RQLNTYGFRKID E+WEFANE F+RG THLLK+IHRRKP++SHS  N   NG PL
Sbjct: 69  FSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPVHSHSLQNQI-NG-PL 128

Query: 123 SEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLIGI 182
           +E ER+ELE++I  L  EK+IL + LQ+   ++  I  Q+Q +  +L  M  +QK ++  
Sbjct: 129 AESERRELEEEINRLKYEKSILVADLQRQNQQQYVINWQMQAMEGRLVAMEQRQKNIVAS 188

Query: 183 LGAELQKHQQSKKRKMWKVNELLVEEWTEFERDEKNNMKKKVKVPPLEL 232
           L   LQ       R+   V+  L+         E ++  KK +VP ++L
Sbjct: 189 LCEMLQ-------RRGGAVSSSLL---------ESDHFSKKRRVPKMDL 219


HSP 2 Score: 30.4 bits (67), Expect = 4.2e+01
Identity = 12/15 (80.00%), Postives = 11/15 (73.33%), Query Frame = 1 

Query: 272 NDVFWEQFLTEIPGS 287
           NDVFWE+FLTE P S
Sbjct: 396 NDVFWERFLTETPRS 410

[Close]
BLAST of Cla013502 vs. Swiss-Prot
Match: HFA4C_ARATH (Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 2.4e-55
Identity = 125/317 (39.43%), Postives = 186/317 (58.68%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           MD ++G S   PP FLTKTYEMVDD  ++S+V+WS++  SF+V NP EF+++LLP +FKH
Sbjct: 1   MDENNGGSSSLPP-FLTKTYEMVDDSSSDSVVAWSENNKSFIVKNPAEFSRDLLPRFFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGA 120
            NFSSF+RQLNTYGFRK+D E+WEF N+ FVRGR +L+K+IHRRKP++SHS  N      
Sbjct: 61  KNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPVHSHSLVNLQAQN- 120

Query: 121 PLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQK--- 180
           PL+E ER+ +E +I+ L  EK  L ++LQ  E E+++  LQ+ T+  +L  M   QK   
Sbjct: 121 PLTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKDRLQHMEQHQKSIV 180

Query: 181 ----QLIGILGAELQKHQQSKKRKMWKVNELLVEEWTEFERDEKNNMK----KKVKVPPL 240
               Q++G  G  L      ++++ ++ N L     +  E+ EK        + +     
Sbjct: 181 AYVSQVLGKPGLSLNLENHERRKRRFQENSLPPSS-SHIEQVEKLESSLTFWENLVSESC 240

Query: 241 ELMGKLELSLGL-CEDLLCNVAQVLREGKEMEVKKEGEM-------RSGVNDVFWEQFLT 299
           E  G    S+     +   ++     +  ++++  E  +       ++GVND FWEQ LT
Sbjct: 241 EKSGLQSSSMDHDAAESSLSIGDTRPKSSKIDMNSEPPVTVTAPAPKTGVNDDFWEQCLT 300

[Close]
BLAST of Cla013502 vs. Swiss-Prot
Match: HFA4A_ARATH (Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.6e-54
Identity = 99/188 (52.66%), Postives = 134/188 (71.28%), Query Frame = 1 

Query: 2   DGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKHN 61
           + + G S  + PPFLTKTYEMVDD  ++SIVSWSQS  SF+VWNPPEF+++LLP +FKHN
Sbjct: 3   ENNHGVSSSSLPPFLTKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHN 62

Query: 62  NFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGAP 121
           NFSSF+RQLNTYGFRK D EQWEFAN+ FVRG+ HL+K+IHRRKP++SHS  N      P
Sbjct: 63  NFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLPNLQAQLNP 122

Query: 122 LSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLIG 181
           L++ ER  +  +I+ L +EK  L  +L K + E+E   +Q++ + ++L  M  +QK ++ 
Sbjct: 123 LTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTMVS 182

Query: 182 ILGAELQK 190
            +   L+K
Sbjct: 183 FVSQVLEK 190


HSP 2 Score: 38.5 bits (88), Expect = 1.5e-01
Identity = 15/31 (48.39%), Postives = 22/31 (70.97%), Query Frame = 1 

Query: 269 SGVNDVFWEQFLTEIPGSSKVSEVYLDRRNN 300
           +G ND FW+QF +E PGS++  EV L+R+++
Sbjct: 337 AGANDGFWQQFFSENPGSTEQREVQLERKDD 367

[Close]
BLAST of Cla013502 vs. Swiss-Prot
Match: HFA4B_ORYSJ (Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-51
Identity = 104/208 (50.00%), Postives = 145/208 (69.71%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           M+G  G  GG+ PPFL+KTYEMVDDP T+++V W+ +G SFVV N PEF ++LLP YFKH
Sbjct: 1   MEGGGG--GGSLPPFLSKTYEMVDDPSTDAVVGWTPAGTSFVVANQPEFCRDLLPKYFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGA 120
           NNFSSFVRQLNTYGFRK+D EQWEFANE F++G+ H LK+IHRRKPI+SHS   SH  GA
Sbjct: 61  NNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPIFSHS---SHSQGA 120

Query: 121 -PLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQL 180
            PL++ ER++ E++I+ L  +   L S+LQ +  +K  +  ++Q + ++L+ + +QQ+ L
Sbjct: 121 GPLTDNERKDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSL 180

Query: 181 I----------GILGAELQKHQQSKKRK 198
           I          G L + +Q+    +K++
Sbjct: 181 ISYVREIVKAPGFLSSFVQQQDHHRKKR 203


HSP 2 Score: 35.0 bits (79), Expect = 1.7e+00
Identity = 17/30 (56.67%), Postives = 18/30 (60.00%), Query Frame = 1 

Query: 270 GVNDVFWEQFLTEIPGSSKV-SEVYLDRRN 299
           G ND FW+QFLTE PGSS    E   +RR+
Sbjct: 372 GANDGFWQQFLTEQPGSSDAHQEAQSERRD 401

[Close]
BLAST of Cla013502 vs. Swiss-Prot
Match: HSFA5_ORYSJ (Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 9.7e-49
Identity = 112/229 (48.91%), Postives = 147/229 (64.19%), Query Frame = 1 

Query: 3   GSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQ-SGFSFVVWNPPEFAQELLPIYFKHN 62
           G  G  GG P PFL KTYEMVDDP T+++VSWS  S  SFVVWN PEFA  LLP YFKH+
Sbjct: 10  GGAGGGGGGPAPFLLKTYEMVDDPSTDAVVSWSDASDASFVVWNHPEFAARLLPAYFKHS 69

Query: 63  NFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGAP 122
           NFSSF+RQLNTYGFRKID E+WEFANE F++G+ HLLK+IHRRKPI+SH    SH  GA 
Sbjct: 70  NFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPIHSH----SHPPGA- 129

Query: 123 LSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLIG 182
           L + ER   E +I+ L +EK+ LQ+ L K + ++     QI+ + +++  M  +Q ++I 
Sbjct: 130 LPDNERAIFEDEIERLSREKSNLQADLWKSKQQQSGTMNQIEDLERRVLGMEQRQTKMIA 189

Query: 183 ILGAELQKHQQSKKRKMWKVNELLVEEWTEFERDEKNNMKKKVKVPPLE 231
            L       QQ+ K   + VN+L+  +  E      +   KK ++P L+
Sbjct: 190 FL-------QQASKNPQF-VNKLV--KMAEASSIFTDAFNKKRRLPGLD 223


HSP 2 Score: 36.2 bits (82), Expect = 7.6e-01
Identity = 17/32 (53.12%), Postives = 17/32 (53.12%), Query Frame = 1 

Query: 271 VNDVFWEQFLTEIPGSSKVSEVYLDRRNNVVR 303
           VND FWEQFLTE PG S+  E     R +  R
Sbjct: 420 VNDKFWEQFLTERPGCSETEEASSGLRTDTSR 451

[Close]
BLAST of Cla013502 vs. TrEMBL
Match: A0A0A0KBI1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169310 PE=3 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 1.6e-146
Identity = 260/302 (86.09%), Postives = 279/302 (92.38%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           MDGS+G+S GAPPPFLTKTYEMVDDPMTNSIVSW+QSGFSFVVWNPPEFAQELLPIYFKH
Sbjct: 1   MDGSEGSSTGAPPPFLTKTYEMVDDPMTNSIVSWNQSGFSFVVWNPPEFAQELLPIYFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGA 120
           NNFSSFVRQLNTYGFRKIDREQWEFANEGF+RG+THLLKSIHRRKPIYSHSQS+    GA
Sbjct: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFIRGKTHLLKSIHRRKPIYSHSQSSQGNGGA 120

Query: 121 PLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLI 180
           PLSEQER ELEQKIKTL+QEKT LQSQLQKHENEKEQIG QIQ IC++LWRMGNQQKQLI
Sbjct: 121 PLSEQERHELEQKIKTLYQEKTNLQSQLQKHENEKEQIGHQIQRICEKLWRMGNQQKQLI 180

Query: 181 GILGAELQKHQQSKKRKMWKVNELLVEEWTEFERDEKNNMKKKVKVPPLELMGKLELSLG 240
           GILGAEL+K++  KKRK+ KVNE LVEE TEFE+D  N  KKKV VPPLEL+GKLELSLG
Sbjct: 181 GILGAELEKNEHRKKRKIGKVNEFLVEELTEFEKD--NLKKKKVNVPPLELLGKLELSLG 240

Query: 241 LCEDLLCNVAQVLREGKEMEVKKEGEMRSGVNDVFWEQFLTEIPGSSKVSEVYLDRRNNV 300
           LCEDLL NV QVL+EGKEMEVKKEGEMRSGVNDVFWE FLTEIPGSS V++V+LDRRNNV
Sbjct: 241 LCEDLLSNVGQVLKEGKEMEVKKEGEMRSGVNDVFWEHFLTEIPGSSNVTQVHLDRRNNV 300

Query: 301 VR 303
           VR
Sbjct: 301 VR 300

[Close]
BLAST of Cla013502 vs. TrEMBL
Match: F6H551_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01410 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 2.9e-68
Identity = 152/331 (45.92%), Postives = 200/331 (60.42%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           M+ S  TS  +PPPFLTKTYEMVDDP+T+SIVSWSQ+G SFVVWNPPEFA++LLP YFKH
Sbjct: 1   MEASQSTSSNSPPPFLTKTYEMVDDPITDSIVSWSQAGHSFVVWNPPEFAKDLLPKYFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGA 120
           NNFSSFVRQLNTYGFRK D EQWEFANE F+RG+ HLLK+IHRRKPI+SHS  N  G+ A
Sbjct: 61  NNFSSFVRQLNTYGFRKADPEQWEFANEEFIRGQRHLLKNIHRRKPIHSHSTQNQVGS-A 120

Query: 121 PLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLI 180
           PL E E+QE E +I+ L  +K  L S+LQ+++ E +    Q Q++ ++++ M  +Q++++
Sbjct: 121 PLPESEKQEFEAEIERLKHDKGALLSELQRYKQENQFFEFQTQSLGKRVFNMELRQRKMM 180

Query: 181 GILGAELQK-----------HQQSKKRKMWKVNELLVE----EWTEFERDEKN------- 240
             L   LQK              +KKR++   N L  E    E  E      N       
Sbjct: 181 AYLAQVLQKPGFTSSLMAQSEIHNKKRRLLMPNYLFNEANNVEMIESLESSLNFWENFLY 240

Query: 241 -------NMKKKVKVPPLELMGKLELSLGLC-EDLLCNVAQVLREGKEMEVKKE---GEM 299
                  ++ +         +  + L++  C + L  +V        E+E  KE   G  
Sbjct: 241 GIGQGSADLARATNHADSPAISSIYLNIDGCPKSLRIDVNSEPTNASEVEASKECEGGTT 300

[Close]
BLAST of Cla013502 vs. TrEMBL
Match: F6HMC3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01770 PE=3 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 3.0e-65
Identity = 148/318 (46.54%), Postives = 195/318 (61.32%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           MD S G+S  +PPPFLTKTYEMVDDP T+SIVSWSQ+  SF+VWNP +F+++LLP +FKH
Sbjct: 1   MDESPGSSN-SPPPFLTKTYEMVDDPTTDSIVSWSQTNKSFIVWNPEDFSRDLLPRFFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNG- 120
           NNFSSF+RQLNTYGFRKID EQW FANE F+RG+ HLL++IHRRKP++SHS  N  G G 
Sbjct: 61  NNFSSFIRQLNTYGFRKIDSEQWAFANEDFIRGQPHLLRNIHRRKPVHSHSIQNQKGQGT 120

Query: 121 -APLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQ 180
             PLSE +R+     I+ L  +K  L  +LQ+H+ +++ + LQ+Q +  +L  M  +Q+ 
Sbjct: 121 SCPLSESDREGYRADIERLKHDKGALLLELQRHKEDRQGLELQMQHLKDRLQHMEQRQQT 180

Query: 181 LIGILGAELQK-----------HQQSKKRKMWKVNELLVEEWTEFER---DEKNNMKKKV 240
           +I  L   LQK              ++KR++   N    E   E  R       N +K  
Sbjct: 181 VISYLARMLQKPGLALSFLPSMETHNRKRRLLTSNCFYDESDVEENRIATSHTVNTEKLD 240

Query: 241 KVPPLELMGKLELSLGLCEDLLCNVAQVLREGKEMEVKKEGEMRSGVNDVFWEQFLTEIP 300
               LEL+  LE SL   ED+L       R   E  V     + +GVNDVFWEQF TE P
Sbjct: 241 ATSVLELVEFLESSLSSWEDIL----DEFRPTSEQVVGAASPVPTGVNDVFWEQFFTENP 300

Query: 301 GSSKVSEVYLDRRNNVVR 303
            SS   EV L+R+++  R
Sbjct: 301 DSS-AEEVQLERKDDESR 312

[Close]
BLAST of Cla013502 vs. TrEMBL
Match: B9IA41_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s13780g PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.3e-63
Identity = 137/274 (50.00%), Postives = 180/274 (65.69%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           MDGS   S  APPPFLTKTY+MVDDP+TNS+VSWS SG SFVVWNPPEFAQ+LLP YFKH
Sbjct: 1   MDGSQSNSSNAPPPFLTKTYDMVDDPLTNSVVSWSHSGCSFVVWNPPEFAQDLLPKYFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGA 120
           NNFSSFVRQLNTYGFRKID +QWEF NE F+RG+ H+LK+IHRRKP++SHS  N HG  +
Sbjct: 61  NNFSSFVRQLNTYGFRKIDPDQWEFGNEEFIRGQRHILKNIHRRKPVHSHSMQN-HGIIS 120

Query: 121 PLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLI 180
           PL+E E+QE E++I  L  +K  L+ +LQ++E EK+    QI ++ ++L  M  +QKQL+
Sbjct: 121 PLAETEKQEYEKEINRLKHDKNELELELQRNEAEKQGFEFQIVSLGERLQSMECRQKQLM 180

Query: 181 GILGAELQKHQ-----------QSKKRKMWKVNELLVEEWTEFERDEKNNMKKKV----- 240
             LG  ++K +            +KKRK+ K++    +      ++E  N+   +     
Sbjct: 181 SFLGQLMRKPEFASLLMQQSEYHNKKRKLLKLDYFQGD-----YKEENENLCSPIANLDG 240

Query: 241 -KVPPL--ELMGKLELSLGLCEDLLCNVAQVLRE 256
              P L  E + KL+ SL   ED L  V +   E
Sbjct: 241 LPAPMLHPESVEKLDSSLKFLEDFLYAVGESFSE 268

[Close]
BLAST of Cla013502 vs. TrEMBL
Match: B9IA41_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s13780g PE=3 SV=1)

HSP 1 Score: 32.3 bits (72), Expect = 1.2e+03
Identity = 15/31 (48.39%), Postives = 20/31 (64.52%), Query Frame = 1 

Query: 269 SGVNDVFWEQFLTEIPG--SSKVSEVYLDRR 298
           +G ND+FW+ FLTE PG    + SE   +RR
Sbjct: 373 NGANDLFWQHFLTEAPGPHDGQESEGRTERR 403


HSP 2 Score: 250.8 bits (639), Expect = 2.2e-63
Identity = 136/274 (49.64%), Postives = 181/274 (66.06%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           MDGS   S  APPPFLTKTY+MVDDP+TNS+VSWS SG SFVVWNPPEFAQ+LLP YFKH
Sbjct: 1   MDGSQSNSSNAPPPFLTKTYDMVDDPLTNSVVSWSHSGCSFVVWNPPEFAQDLLPKYFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGA 120
           NNFSSFVRQLNTYGFRKID +QWEF NE F+RG+ HLLK+IHRRKP++SHS  N HG  +
Sbjct: 61  NNFSSFVRQLNTYGFRKIDPDQWEFGNEEFIRGQRHLLKNIHRRKPVHSHSMQN-HGIIS 120

Query: 121 PLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLI 180
           PL+E E+QE E++I  L  +K  L+ +L+++E EK+    QI ++ ++L  M  +QKQL+
Sbjct: 121 PLAETEKQEYEKEINRLKHDKNELELELRRNEAEKQGFEFQIVSLGERLQGMECRQKQLM 180

Query: 181 GILGAELQKHQ-----------QSKKRKMWKVNELLVEEWTEFERDEKNNMKKKV----- 240
             L   ++K +            +KKRK+ K++        +++++E  N+   +     
Sbjct: 181 SFLAQLMRKPEFASLLMQQSEYHNKKRKLLKLDYF----QGDYKKEENENLCSPIANLDG 240

Query: 241 -KVPPL--ELMGKLELSLGLCEDLLCNVAQVLRE 256
              P L  E + KL+ SL   ED L  V +   E
Sbjct: 241 LPAPMLHPESVEKLDSSLKFLEDFLYAVGESFGE 269

[Close]
BLAST of Cla013502 vs. NCBI nr
Match: gi|659112958|ref|XP_008456389.1| (PREDICTED: heat stress transcription factor A-4c-like [Cucumis melo])

HSP 1 Score: 535.8 bits (1379), Expect = 4.9e-149
Identity = 264/302 (87.42%), Postives = 281/302 (93.05%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           M  S+G+S GAPPPFLTKTYEMVDDPM+NSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH
Sbjct: 1   MVSSEGSSSGAPPPFLTKTYEMVDDPMSNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGA 120
           NNFSSFVRQLNTYGFRKIDREQWEFANEGF+RG+THLLKSIHRRKP+YSHSQS+    GA
Sbjct: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFIRGKTHLLKSIHRRKPMYSHSQSSQGNGGA 120

Query: 121 PLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLI 180
           PLSEQERQELE KIKTL+QEKT L+SQLQKHENEKEQIG QIQ IC++LWRMG+QQKQLI
Sbjct: 121 PLSEQERQELEHKIKTLYQEKTNLESQLQKHENEKEQIGHQIQRICEKLWRMGHQQKQLI 180

Query: 181 GILGAELQKHQQSKKRKMWKVNELLVEEWTEFERDEKNNMKKKVKVPPLELMGKLELSLG 240
           GILGAEL+KH+Q KKRKM KVNELLVEEWTEFERD+    KKKV V PLELMGKLELSL 
Sbjct: 181 GILGAELEKHEQRKKRKMGKVNELLVEEWTEFERDDLK--KKKVNVSPLELMGKLELSLE 240

Query: 241 LCEDLLCNVAQVLREGKEMEVKKEGEMRSGVNDVFWEQFLTEIPGSSKVSEVYLDRRNNV 300
           LCEDLLCNVAQVL+EGKEMEVKKEGEMRSGVNDVFWE FLTEIPGSSKV+EVYLDRRNNV
Sbjct: 241 LCEDLLCNVAQVLKEGKEMEVKKEGEMRSGVNDVFWEHFLTEIPGSSKVTEVYLDRRNNV 300

Query: 301 VR 303
           VR
Sbjct: 301 VR 300

[Close]
BLAST of Cla013502 vs. NCBI nr
Match: gi|449450958|ref|XP_004143229.1| (PREDICTED: heat stress transcription factor A-4d [Cucumis sativus])

HSP 1 Score: 526.9 bits (1356), Expect = 2.3e-146
Identity = 260/302 (86.09%), Postives = 279/302 (92.38%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           MDGS+G+S GAPPPFLTKTYEMVDDPMTNSIVSW+QSGFSFVVWNPPEFAQELLPIYFKH
Sbjct: 1   MDGSEGSSTGAPPPFLTKTYEMVDDPMTNSIVSWNQSGFSFVVWNPPEFAQELLPIYFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGA 120
           NNFSSFVRQLNTYGFRKIDREQWEFANEGF+RG+THLLKSIHRRKPIYSHSQS+    GA
Sbjct: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFIRGKTHLLKSIHRRKPIYSHSQSSQGNGGA 120

Query: 121 PLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLI 180
           PLSEQER ELEQKIKTL+QEKT LQSQLQKHENEKEQIG QIQ IC++LWRMGNQQKQLI
Sbjct: 121 PLSEQERHELEQKIKTLYQEKTNLQSQLQKHENEKEQIGHQIQRICEKLWRMGNQQKQLI 180

Query: 181 GILGAELQKHQQSKKRKMWKVNELLVEEWTEFERDEKNNMKKKVKVPPLELMGKLELSLG 240
           GILGAEL+K++  KKRK+ KVNE LVEE TEFE+D  N  KKKV VPPLEL+GKLELSLG
Sbjct: 181 GILGAELEKNEHRKKRKIGKVNEFLVEELTEFEKD--NLKKKKVNVPPLELLGKLELSLG 240

Query: 241 LCEDLLCNVAQVLREGKEMEVKKEGEMRSGVNDVFWEQFLTEIPGSSKVSEVYLDRRNNV 300
           LCEDLL NV QVL+EGKEMEVKKEGEMRSGVNDVFWE FLTEIPGSS V++V+LDRRNNV
Sbjct: 241 LCEDLLSNVGQVLKEGKEMEVKKEGEMRSGVNDVFWEHFLTEIPGSSNVTQVHLDRRNNV 300

Query: 301 VR 303
           VR
Sbjct: 301 VR 300

[Close]
BLAST of Cla013502 vs. NCBI nr
Match: gi|719976057|ref|XP_010248394.1| (PREDICTED: heat stress transcription factor A-4b-like [Nelumbo nucifera])

HSP 1 Score: 259.2 bits (661), Expect = 8.8e-66
Identity = 147/277 (53.07%), Postives = 185/277 (66.79%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           MDGS G+S  APPPFLTKTYEMVDD  TNSIVSWS++G SFVVWNPPEFA++LLP YFKH
Sbjct: 1   MDGSQGSSN-APPPFLTKTYEMVDDLPTNSIVSWSENGNSFVVWNPPEFARDLLPKYFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGA 120
           NNFSSFVRQLNTYGFRKID +QWEF NE F+RG+ HLLK+IHRRKPI+SHSQ N HGN  
Sbjct: 61  NNFSSFVRQLNTYGFRKIDPDQWEFGNEDFIRGQRHLLKNIHRRKPIHSHSQQNQHGNST 120

Query: 121 PLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLI 180
            L E ERQELE++I+ L  EK+ L   LQ+H  E++ I  Q+Q++ Q+L ++  +Q+Q++
Sbjct: 121 GLIESERQELEEEIEKLKHEKSKLILDLQRHTQEQQGIESQMQSLEQKLHQLQQRQRQMM 180

Query: 181 GILGAELQK-----------HQQSKKRKMWKVNELLVEEWTE------FERDEKNNMKKK 240
             L   LQK              +KKR++ K++ L  E   E      F+R+  + +   
Sbjct: 181 AFLCQILQKPGVASNLMKDSENYNKKRRLPKLDYLYGEADIEENQVVTFQRERPDAVSMP 240

Query: 241 V-KVPPLELMGKLELSLGLCEDLLCNVAQVLREGKEM 260
           V  + P E   KLE SL   E  L  V Q    G+EM
Sbjct: 241 VINIEPFE---KLESSLNSWETFLNGVGQA--SGEEM 271

[Close]
BLAST of Cla013502 vs. NCBI nr
Match: gi|719976057|ref|XP_010248394.1| (PREDICTED: heat stress transcription factor A-4b-like [Nelumbo nucifera])

HSP 1 Score: 48.1 bits (113), Expect = 3.1e-02
Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1 

Query: 269 SGVNDVFWEQFLTEIPGSSKVSEVYLDRRNNVVR 303
           +GVND+FWEQFLTE PGSS   EV  +RR+  VR
Sbjct: 379 TGVNDLFWEQFLTETPGSSDTQEVQSERRDADVR 412


HSP 2 Score: 258.8 bits (660), Expect = 1.1e-65
Identity = 134/266 (50.38%), Postives = 179/266 (67.29%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           MDGS G SGGAP PFLTKTY++VDDP +N +VSWS++G SFVVW+P EFA+E+LP+YFKH
Sbjct: 1   MDGSQGGSGGAPAPFLTKTYDLVDDPSSNHMVSWSETGSSFVVWDPTEFAKEMLPMYFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGA 120
           NNFSSFVRQLNTYGFRKID EQWEFANE F+RG  HLLK+IHRRKPI+SHS  N   +  
Sbjct: 61  NNFSSFVRQLNTYGFRKIDPEQWEFANEEFLRGGRHLLKNIHRRKPIHSHSLQNHEYSSV 120

Query: 121 PLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLI 180
           PL++ ER+E E+KI  L+ +K++L+ ++Q+H+ E ++   QIQ + +QL  M N+Q+Q  
Sbjct: 121 PLTDTEREEYEKKINRLNHDKSLLELEVQRHQRENQEFEFQIQILREQLQNMENRQRQYT 180

Query: 181 GILGAELQK-----------HQQSKKRKMWKVNELLVEEWTEFERDEKNNMKKKVKVPPL 240
             L   +QK              SKKR++ K N+   +   E   D   N +K+     L
Sbjct: 181 AFLAQLVQKPGFASVLVQQSEIHSKKRRLLKSNDFPDDFGME---DLTLNPQKETLGIKL 240

Query: 241 ELMGKLELSLGLCEDLLCNVAQVLRE 256
           + + K+E SL   ED L  V + + E
Sbjct: 241 DQLEKMESSLNFWEDFLHGVGEAMPE 263

[Close]
BLAST of Cla013502 vs. NCBI nr
Match: gi|694378012|ref|XP_009365270.1| (PREDICTED: heat stress transcription factor A-4b-like [Pyrus x bretschneideri])

HSP 1 Score: 36.2 bits (82), Expect = 1.2e+02
Identity = 19/50 (38.00%), Postives = 25/50 (50.00%), Query Frame = 1 

Query: 250 AQVLREGKEMEVKKEGEMRSGVNDVFWEQFLTEIPGSSKVSEVYLDRRNN 300
           A  L   KE   + +    +  NDVFWEQ LTE PG     EV  +R ++
Sbjct: 349 APALDSSKENVAEVKNAEPAKANDVFWEQCLTETPGLDDAPEVQSERMDS 398


HSP 2 Score: 252.7 bits (644), Expect = 8.2e-64
Identity = 147/321 (45.79%), Postives = 196/321 (61.06%), Query Frame = 1 

Query: 1   MDGSDGTSGGAPPPFLTKTYEMVDDPMTNSIVSWSQSGFSFVVWNPPEFAQELLPIYFKH 60
           MD S G+S  +PPPFLTKTYEMVDDP T+SIVSWSQ+  SF+VWNP +F+++LLP +FKH
Sbjct: 1   MDESPGSSN-SPPPFLTKTYEMVDDPTTDSIVSWSQTNKSFIVWNPEDFSRDLLPRFFKH 60

Query: 61  NNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNG- 120
           NNFSSF+RQLNTYGFRKID EQW FANE F+RG+ HLL++IHRRKP++SHS  N  G G 
Sbjct: 61  NNFSSFIRQLNTYGFRKIDSEQWAFANEDFIRGQPHLLRNIHRRKPVHSHSIQNQKGQGT 120

Query: 121 -APLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQ 180
             PLSE +R+     I+ L  +K  L  +LQ+H+ +++ + LQ+Q +  +L  M  +Q+ 
Sbjct: 121 SCPLSESDREGYRADIERLKHDKGALLLELQRHKEDRQGLELQMQHLKDRLQHMEQRQQT 180

Query: 181 LIGILGAELQK-----------HQQSKKRKMWKVNELLVEEWTEFER---DEKNNMKKKV 240
           +I  L   LQK              ++KR++   N    E   E  R       N +K  
Sbjct: 181 VISYLARMLQKPGLALSFLPSMETHNRKRRLLTSNCFYDESDVEENRIATSHTVNTEKLD 240

Query: 241 KVPPLELMGKLELSLGLCEDLLCN---VAQVLREGKEMEVKKEGEMRSGVNDVFWEQFLT 300
               LEL+  LE SL   ED+L      +  L    +  V     + +GVNDVFWEQF T
Sbjct: 241 ATSVLELVEFLESSLSSWEDILDEFRPTSGTLIHPWKQVVGAASPVPTGVNDVFWEQFFT 300

Query: 301 EIPGSSKVSEVYLDRRNNVVR 303
           E P SS   EV L+R+++  R
Sbjct: 301 ENPDSS-AEEVQLERKDDESR 319

The following BLAST results are available for this feature:
BLAST of Cla013502 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HFA4D_ORYSJ4.8e-5651.09Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D ... [more]
HFA4C_ARATH2.4e-5539.43Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=... [more]
HFA4A_ARATH2.6e-5452.66Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=... [more]
HFA4B_ORYSJ1.6e-5150.00Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B ... [more]
HSFA5_ORYSJ9.7e-4948.91Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE... [more]
BLAST of Cla013502 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBI1_CUCSA1.6e-14686.09Uncharacterized protein OS=Cucumis sativus GN=Csa_6G169310 PE=3 SV=1[more]
F6H551_VITVI2.9e-6845.92Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g01410 PE=3 SV=... [more]
F6HMC3_VITVI3.0e-6546.54Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g01770 PE=3 SV=... [more]
B9IA41_POPTR1.3e-6350.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s13780g PE=3 SV=1[more]
B9IA41_POPTR1.2e+0348.39Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s13780g PE=3 SV=1[more]
BLAST of Cla013502 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112958|ref|XP_008456389.1|4.9e-14987.42PREDICTED: heat stress transcription factor A-4c-like [Cucumis melo][more]
gi|449450958|ref|XP_004143229.1|2.3e-14686.09PREDICTED: heat stress transcription factor A-4d [Cucumis sativus][more]
gi|719976057|ref|XP_010248394.1|8.8e-6653.07PREDICTED: heat stress transcription factor A-4b-like [Nelumbo nucifera][more]
gi|719976057|ref|XP_010248394.1|3.1e-0264.71PREDICTED: heat stress transcription factor A-4b-like [Nelumbo nucifera][more]
gi|694378012|ref|XP_009365270.1|1.2e+0238.00PREDICTED: heat stress transcription factor A-4b-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000232HSF_DNA-bd
IPR011991Winged helix-turn-helix DNA-binding domain
IPR027725HSF_fam
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009408 response to heat
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0061408 positive regulation of transcription from RNA polymerase II promoter in response to heat stress
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer
molecular_function GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla013502Cla013502.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000232Heat shock factor (HSF)-type, DNA-bindingPRINTSPR00056HSFDOMAINcoord: 53..65
score: 2.2E-20coord: 66..78
score: 2.2E-20coord: 15..38
score: 2.2
IPR000232Heat shock factor (HSF)-type, DNA-bindingPFAMPF00447HSF_DNA-bindcoord: 15..104
score: 4.1
IPR000232Heat shock factor (HSF)-type, DNA-bindingSMARTSM00415hsfneu3coord: 11..104
score: 3.2
IPR000232Heat shock factor (HSF)-type, DNA-bindingPROSITEPS00434HSF_DOMAINcoord: 54..78
scor
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 12..104
score: 6.0
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 11..104
score: 5.98
IPR027725Heat shock transcription factor familyPANTHERPTHR10015HEAT SHOCK TRANSCRIPTION FACTORcoord: 1..189
score: 1.4
NoneNo IPR availableunknownCoilCoilcoord: 120..161
scor
NoneNo IPR availablePANTHERPTHR10015:SF172SUBFAMILY NOT NAMEDcoord: 1..189
score: 1.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla013502Cla97C02G044050Watermelon (97103) v2wmwmbB316
Cla013502Cla97C03G058690Watermelon (97103) v2wmwmbB339
Cla013502Csa6G169310Cucumber (Chinese Long) v2cuwmB514
Cla013502MELO3C019715Melon (DHL92) v3.5.1mewmB121
Cla013502ClCG02G018230Watermelon (Charleston Gray)wcgwmB197
Cla013502ClCG03G007410Watermelon (Charleston Gray)wcgwmB245
Cla013502CSPI01G21830Wild cucumber (PI 183967)cpiwmB078
Cla013502CSPI06G13170Wild cucumber (PI 183967)cpiwmB532
Cla013502Cucsa.212820Cucumber (Gy14) v1cgywmB413
Cla013502Cucsa.139730Cucumber (Gy14) v1cgywmB245
Cla013502CmaCh02G000530Cucurbita maxima (Rimu)cmawmB593
Cla013502CmoCh13G006110Cucurbita moschata (Rifu)cmowmB199
Cla013502CmoCh02G000520Cucurbita moschata (Rifu)cmowmB586
Cla013502Lsi10G015560Bottle gourd (USVL1VR-Ls)lsiwmB078
Cla013502Cp4.1LG05g15430Cucurbita pepo (Zucchini)cpewmB724
Cla013502CsGy6G013210Cucumber (Gy14) v2cgybwmB481
Cla013502MELO3C019715.2Melon (DHL92) v3.6.1medwmB106
Cla013502Carg03454Silver-seed gourdcarwmB0330
Cla013502Carg13630Silver-seed gourdcarwmB0030
Cla013502CsaV3_1G033050Cucumber (Chinese Long) v3cucwmB082
Cla013502CsaV3_6G015610Cucumber (Chinese Long) v3cucwmB538
Cla013502Bhi10G000785Wax gourdwgowmB396
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla013502Cla019642Watermelon (97103) v1wmwmB093
The following block(s) are covering this gene:
GeneOrganismBlock
Cla013502Cucumber (Gy14) v1cgywmB356
Cla013502Cucurbita maxima (Rimu)cmawmB124
Cla013502Cucurbita maxima (Rimu)cmawmB500
Cla013502Cucurbita maxima (Rimu)cmawmB524
Cla013502Cucurbita moschata (Rifu)cmowmB112
Cla013502Cucurbita moschata (Rifu)cmowmB493
Cla013502Cucurbita moschata (Rifu)cmowmB513
Cla013502Melon (DHL92) v3.5.1mewmB420
Cla013502Cucumber (Chinese Long) v2cuwmB522
Cla013502Cucurbita pepo (Zucchini)cpewmB054
Cla013502Cucurbita pepo (Zucchini)cpewmB265
Cla013502Cucurbita pepo (Zucchini)cpewmB303
Cla013502Cucurbita pepo (Zucchini)cpewmB668
Cla013502Bottle gourd (USVL1VR-Ls)lsiwmB108
Cla013502Cucumber (Gy14) v2cgybwmB487
Cla013502Melon (DHL92) v3.6.1medwmB409
Cla013502Silver-seed gourdcarwmB0389
Cla013502Silver-seed gourdcarwmB0530
Cla013502Cucumber (Chinese Long) v3cucwmB546
Cla013502Wax gourdwgowmB282