Cla011705 (gene) Watermelon (97103) v1

Overview
NameCla011705
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionZinc knuckle family protein (AHRD V1 ***- Q7XG75_ORYSJ)
LocationChr7 : 11820254 .. 11820562 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTAACTATGCGACCCGCGTCTCAAGGTTCGAGATTTGAAATGAAGCCAGTCATGCTTCAGATCCTACAAACAACAGGTCAGTTTAGGGGATCACCCGGTGAAGACCCTCATGCTCACCTAAAAAGCTTCATCGAAATAAGTAACACCTTCGTCATCCCAAACATAAGTGCAGATGACATCTGGTTGACGCTGTTCCCATTCTCCCCCAGAGATGAGGCGAGACAGTGGGCATATTCTTCGAAACCAAGTGAGATCACCACCTGGAACCAAATATGGGCAAAAGAATCTATGGACAAGCACTAA

mRNA sequence

ATGGGGCTAACTATGCGACCCGCGTCTCAAGGTTCGAGATTTGAAATGAAGCCAGTCATGCTTCAGATCCTACAAACAACAGGTCAGTTTAGGGGATCACCCGGTGAAGACCCTCATGCTCACCTAAAAAGCTTCATCGAAATAAGTAACACCTTCGTCATCCCAAACATAAGTGCAGATGACATCTGGTTGACGCTGTTCCCATTCTCCCCCAGAGATGAGGCGAGACAGTGGGCATATTCTTCGAAACCAAGTGAGATCACCACCTGGAACCAAATATGGGCAAAAGAATCTATGGACAAGCACTAA

Coding sequence (CDS)

ATGGGGCTAACTATGCGACCCGCGTCTCAAGGTTCGAGATTTGAAATGAAGCCAGTCATGCTTCAGATCCTACAAACAACAGGTCAGTTTAGGGGATCACCCGGTGAAGACCCTCATGCTCACCTAAAAAGCTTCATCGAAATAAGTAACACCTTCGTCATCCCAAACATAAGTGCAGATGACATCTGGTTGACGCTGTTCCCATTCTCCCCCAGAGATGAGGCGAGACAGTGGGCATATTCTTCGAAACCAAGTGAGATCACCACCTGGAACCAAATATGGGCAAAAGAATCTATGGACAAGCACTAA

Protein sequence

MGLTMRPASQGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDIWLTLFPFSPRDEARQWAYSSKPSEITTWNQIWAKESMDKH
Homology
[Close]
BLAST of Cla011705 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 8.5e-20
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 5   MRPASQGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDIWL 64
           +RP  Q  +FE+KPVM Q+LQT GQF G P EDPH HL+SF+E+S++F I  +S + + L
Sbjct: 39  VRPEIQAPQFELKPVMFQMLQTVGQFSGMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRL 98

Query: 65  TLFPFSPRDEARQWAYSSKPSEITTWNQIWAK 97
            LFPFS RD AR W  +  P  +T WN +  K
Sbjct: 99  KLFPFSLRDRARSWLNTLPPDSVTNWNDLAEK 130

[Close]
BLAST of Cla011705 vs. TrEMBL
Match: U5CUK7_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.5e-19
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 5   MRPASQGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDIWL 64
           +RP  Q   FE+KPVM Q+LQT GQF GSP EDPH H++SF+E+S++F +  +S + + L
Sbjct: 41  VRPEIQAPHFELKPVMFQMLQTVGQFGGSPTEDPHLHIRSFLEVSDSFKLQGVSEEALRL 100

Query: 65  TLFPFSPRDEARQWAYSSKPSEITTWNQI 94
            LFPFS RD AR W  +  P  +T WN +
Sbjct: 101 KLFPFSLRDRARAWLNTLPPDSVTNWNDL 129

[Close]
BLAST of Cla011705 vs. TrEMBL
Match: W9RHB3_9ROSA (Putative disease resistance RPP13-like protein 1 OS=Morus notabilis GN=L484_000983 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.5e-16
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1 

Query: 5    MRPASQGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDIWL 64
            +RP  +   FE+KPVM Q+LQ  GQF G   +DPH HL+ F+E+S+ F +P + ++ + L
Sbjct: 1422 VRPNIEAPHFELKPVMFQMLQIVGQFSGMATDDPHQHLRLFMEVSDIFKLPGVPSETLRL 1481

Query: 65   TLFPFSPRDEARQWAYSSKPSEITTWNQIWAK 97
            TLFPFS RD AR W  S     I TWN +  K
Sbjct: 1482 TLFPFSLRDRARAWFNSLPADSIITWNDMAEK 1513

[Close]
BLAST of Cla011705 vs. TrEMBL
Match: A0A061EW79_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 41/91 (45.05%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 6   RPASQGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDIWLT 65
           RP  Q + FE+KP ++Q++QT  QF G P +DP+AH+ +F+EI +TF    ++ D I L 
Sbjct: 39  RPLIQANIFEIKPSIIQMIQTVVQFGGLPNDDPNAHIVNFLEICDTFKANGVTDDAIRLR 98

Query: 66  LFPFSPRDEARQWAYSSKPSEITTWNQIWAK 97
           LFPFS RD+A+ W+ S   S I TW+ +  K
Sbjct: 99  LFPFSLRDKAKSWSNSLLASSINTWDDLAKK 129

[Close]
BLAST of Cla011705 vs. TrEMBL
Match: W9QKY9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012582 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.9e-13
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1 

Query: 3   LTMRPASQGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDI 62
           L  R A Q + FE+K VMLQI+Q   QF G P EDP+AH+ +F+E  +T     ++ + +
Sbjct: 549 LIKRLAIQANNFELKSVMLQIIQAI-QFNGLPNEDPNAHITNFLETCDTIKYNGVNDEAL 608

Query: 63  WLTLFPFSPRDEARQWAYSSKPSEITTWNQIWAK 97
            L LFPFS RD+A+ W  S  P+ IT+W  +  K
Sbjct: 609 RLRLFPFSLRDKAKSWLNSLSPNSITSWEDLVQK 641

[Close]
BLAST of Cla011705 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-19
Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 5   MRPASQGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDIWL 64
           +RP  Q  +FE+KPVM Q+LQT GQF G P EDPH HL+SF+E+S++F I  +S + + L
Sbjct: 39  VRPEIQAPQFELKPVMFQMLQTVGQFSGMPTEDPHLHLRSFLEVSDSFKIQGVSEEVLRL 98

Query: 65  TLFPFSPRDEARQWAYSSKPSEITTWNQIWAK 97
            LFPFS RD AR W  +  P  +T WN +  K
Sbjct: 99  KLFPFSLRDRARSWLNTLPPDSVTNWNDLAEK 130

[Close]
BLAST of Cla011705 vs. NCBI nr
Match: gi|548830393|gb|ERM93434.1| (hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda])

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-19
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1 

Query: 5   MRPASQGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDIWL 64
           +RP  Q   FE+KPVM Q+LQT GQF GSP EDPH H++SF+E+S++F +  +S + + L
Sbjct: 41  VRPEIQAPHFELKPVMFQMLQTVGQFGGSPTEDPHLHIRSFLEVSDSFKLQGVSEEALRL 100

Query: 65  TLFPFSPRDEARQWAYSSKPSEITTWNQI 94
            LFPFS RD AR W  +  P  +T WN +
Sbjct: 101 KLFPFSLRDRARAWLNTLPPDSVTNWNDL 129

[Close]
BLAST of Cla011705 vs. NCBI nr
Match: gi|985457975|ref|XP_015387726.1| (PREDICTED: uncharacterized protein LOC107177802 [Citrus sinensis])

HSP 1 Score: 102.4 bits (254), Expect = 4.6e-19
Identity = 47/89 (52.81%), Postives = 58/89 (65.17%), Query Frame = 1 

Query: 5   MRPASQGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDIWL 64
           +RP  Q   FE+KP+M Q+LQT GQF G P EDPH HLK F+++S+ F I   S + + L
Sbjct: 66  VRPDVQADNFELKPMMFQMLQTVGQFNGLPSEDPHLHLKLFLDVSDAFKIARASQEALRL 125

Query: 65  TLFPFSPRDEARQWAYSSKPSEITTWNQI 94
            LFPFS RD AR W  S  P  ITTWN +
Sbjct: 126 RLFPFSLRDRARAWLKSLPPDSITTWNDL 154

[Close]
BLAST of Cla011705 vs. NCBI nr
Match: gi|802538129|ref|XP_012067037.1| (PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 5.7e-17
Identity = 42/89 (47.19%), Postives = 64/89 (71.91%), Query Frame = 1 

Query: 5   MRPASQGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDIWL 64
           +RP    +RFE+KP +LQ++Q + QF G P EDP++H+ SF+EI +TF + +++AD I L
Sbjct: 62  VRPPVNANRFEIKPALLQMIQNSVQFYGLPNEDPNSHIASFLEICDTFKMNSVTADAIKL 121

Query: 65  TLFPFSPRDEARQWAYSSKPSEITTWNQI 94
            LFPF+ +D+A+ W  S  P+ ITTW Q+
Sbjct: 122 RLFPFTLKDKAKAWLNSLPPNSITTWEQL 150

[Close]
BLAST of Cla011705 vs. NCBI nr
Match: gi|985433061|ref|XP_015382387.1| (PREDICTED: uncharacterized protein LOC107175480 [Citrus sinensis])

HSP 1 Score: 94.0 bits (232), Expect = 1.7e-16
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 1 

Query: 10  QGSRFEMKPVMLQILQTTGQFRGSPGEDPHAHLKSFIEISNTFVIPNISADDIWLTLFPF 69
           Q + F++KPVM Q+LQT GQF G P EDPH +LK F+E+S+   I   S D + L LFP+
Sbjct: 30  QANNFQLKPVMFQMLQTVGQFNGLPSEDPHLYLKLFLEVSDACKIAGASQDALRLRLFPY 89

Query: 70  SPRDEARQWAYSSKPSEITTWNQI 94
           S RD AR W  S  P+ ITTW+ +
Sbjct: 90  SLRDRARAWLNSLTPNSITTWSDL 113

The following BLAST results are available for this feature:
BLAST of Cla011705 vs. TrEMBL
Match NameE-valueIdentityDescription
U5CUI2_AMBTC8.5e-2051.09Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=... [more]
U5CUK7_AMBTC1.5e-1950.56Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s03373p00007640 PE=4 SV=... [more]
W9RHB3_9ROSA1.5e-1646.74Putative disease resistance RPP13-like protein 1 OS=Morus notabilis GN=L484_0009... [more]
A0A061EW79_THECC1.8e-1445.05Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1[more]
W9QKY9_9ROSA5.9e-1343.62Uncharacterized protein OS=Morus notabilis GN=L484_012582 PE=4 SV=1[more]
BLAST of Cla011705 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|548830333|gb|ERM93404.1|1.2e-1951.09hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda][more]
gi|548830393|gb|ERM93434.1|2.1e-1950.56hypothetical protein AMTR_s03373p00007640 [Amborella trichopoda][more]
gi|985457975|ref|XP_015387726.1|4.6e-1952.81PREDICTED: uncharacterized protein LOC107177802 [Citrus sinensis][more]
gi|802538129|ref|XP_012067037.1|5.7e-1747.19PREDICTED: uncharacterized protein LOC105629978 [Jatropha curcas][more]
gi|985433061|ref|XP_015382387.1|1.7e-1651.19PREDICTED: uncharacterized protein LOC107175480 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011705Cla011705.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33067FAMILY NOT NAMEDcoord: 16..93
score: 5.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla011705Watermelon (97103) v2wmwmbB170
Cla011705Wax gourdwgowmB549
Cla011705Cucurbita maxima (Rimu)cmawmB695
Cla011705Cucurbita maxima (Rimu)cmawmB697
Cla011705Cucurbita moschata (Rifu)cmowmB689
Cla011705Cucurbita moschata (Rifu)cmowmB691
Cla011705Watermelon (Charleston Gray)wcgwmB368
Cla011705Cucurbita pepo (Zucchini)cpewmB423
Cla011705Cucurbita pepo (Zucchini)cpewmB425
Cla011705Bottle gourd (USVL1VR-Ls)lsiwmB303
Cla011705Silver-seed gourdcarwmB0168
Cla011705Silver-seed gourdcarwmB0668