Cla010605 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla010605
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ty3-gypsy retrotransposon protein (AHRD V1 ***- E5GCP6_CUCME)
Location	Chr6 : 11220291 .. 11220542 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTCATGATGGCTGATGTAACAGCAGAGGCAACCATGGCAGAGATGGAGAGAAAAATAGATCTCCTAATGAAAGCTATCGAGGAGCGAGATCATGAGATCGTTGCCTTAAAAGAGCAGATGCAGGCTCGAGAAACTGCCGAGTCAAGCCAAACGCCCGCTACCAAGGCCAATGACAAAGGGAAAACTTTGTTGCAGGAAAATCGGTTGCAACAATCCACCTCTATAGCCTCTTTCTCAGTTCAATAG

mRNA sequence

ATGTCTGTCATGATGGCTGATGTAACAGCAGAGGCAACCATGGCAGAGATGGAGAGAAAAATAGATCTCCTAATGAAAGCTATCGAGGAGCGAGATCATGAGATCGTTGCCTTAAAAGAGCAGATGCAGGCTCGAGAAACTGCCGAGTCAAGCCAAACGCCCGCTACCAAGGCCAATGACAAAGGGAAAACTTTGTTGCAGGAAAATCGGTTGCAACAATCCACCTCTATAGCCTCTTTCTCAGTTCAATAG

Coding sequence (CDS)

ATGTCTGTCATGATGGCTGATGTAACAGCAGAGGCAACCATGGCAGAGATGGAGAGAAAAATAGATCTCCTAATGAAAGCTATCGAGGAGCGAGATCATGAGATCGTTGCCTTAAAAGAGCAGATGCAGGCTCGAGAAACTGCCGAGTCAAGCCAAACGCCCGCTACCAAGGCCAATGACAAAGGGAAAACTTTGTTGCAGGAAAATCGGTTGCAACAATCCACCTCTATAGCCTCTTTCTCAGTTCAATAG

Protein sequence

MSVMMADVTAEATMAEMERKIDLLMKAIEERDHEIVALKEQMQARETAESSQTPATKANDKGKTLLQENRLQQSTSIASFSVQ

Homology

[Close]

BLAST of Cla010605 vs. TrEMBL
Match: E5GCP6_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.7e-23
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 1   MSVMMADVTAEATMAEMERKIDLLMKAIEERDHEIVALKEQMQARETAESSQTPATKAND 60
           +SVMM DVTAEAT+ EMERKI+ LMK IEERDHEI ALK+QM+A ET ESSQTP  KA D
Sbjct: 84  VSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAALKDQMKACETGESSQTPVVKATD 143

Query: 61  KGKTLLQENR-LQQSTSIASFSVQ 84
           KGK ++QEN+  QQS S+AS SVQ
Sbjct: 144 KGKNVVQENQPQQQSVSVASLSVQ 167

[Close]

BLAST of Cla010605 vs. TrEMBL
Match: E5GB67_CUCME (Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.1e-16
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 1   MSVMMADVTAEATMAEMERKIDLLMKAIEERDHEIVALKEQMQARETAESSQTPATKAND 60
           +SVMM DVTAEATMAEME+KI+ LMK +EERDHEI ALK+QM+A E+AESSQT   K  D
Sbjct: 53  VSVMMIDVTAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTD 112

Query: 61  KGKTL 66
           KGK +
Sbjct: 113 KGKNV 117

[Close]

BLAST of Cla010605 vs. TrEMBL
Match: E5GCE3_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-08
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 1   MSVMMADVTAEATMAEMERKIDLLMKAIEERDHEIVALKEQMQARETAE 50
           +SV+MA VTAE TM EMERKI+ LMKA+++RDHEI AL++QM+A  TAE
Sbjct: 82  VSVIMAAVTAETTMVEMERKINFLMKAVKDRDHEITALEDQMKACVTAE 130

[Close]

BLAST of Cla010605 vs. TrEMBL
Match: E5GBB0_CUCME (Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.1e-07
Identity = 30/58 (51.72%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 1   MSVMMADV-TAEATMAEMERKIDLLMKAIEERDHEIVALKEQMQARETAESSQTPATK 58
           MSVM+ DV T+EA M E+E+K+++LMKA+EERD +I +LK  +++R+TAES+    T+
Sbjct: 82  MSVMVTDVDTSEARMVELEKKVNMLMKAVEERDFKIASLKNHIESRDTAESTVEMCTQ 139

[Close]

BLAST of Cla010605 vs. NCBI nr
Match: gi|307136441|gb|ADN34247.1| (ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 1


Query: 1   MSVMMADVTAEATMAEMERKIDLLMKAIEERDHEIVALKEQMQARETAESSQTPATKAND 60
           +SVMM DVTAEAT+ EMERKI+ LMK IEERDHEI ALK+QM+A ET ESSQTP  KA D
Sbjct: 84  VSVMMVDVTAEATVTEMERKINFLMKVIEERDHEIAALKDQMKACETGESSQTPVVKATD 143

Query: 61  KGKTLLQENR-LQQSTSIASFSVQ 84
           KGK ++QEN+  QQS S+AS SVQ
Sbjct: 144 KGKNVVQENQPQQQSVSVASLSVQ 167

[Close]

BLAST of Cla010605 vs. NCBI nr
Match: gi|307135838|gb|ADN33709.1| (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 92.8 bits (229), Expect = 3.0e-16
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1


Query: 1   MSVMMADVTAEATMAEMERKIDLLMKAIEERDHEIVALKEQMQARETAESSQTPATKAND 60
           +SVMM DVTAEATMAEME+KI+ LMK +EERDHEI ALK+QM+A E+AESSQT   K  D
Sbjct: 53  VSVMMIDVTAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTD 112

Query: 61  KGKTL 66
           KGK +
Sbjct: 113 KGKNV 117

[Close]

BLAST of Cla010605 vs. NCBI nr
Match: gi|659127214|ref|XP_008463585.1| (PREDICTED: uncharacterized protein LOC103501695 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-12
Identity = 39/50 (78.00%), Postives = 45/50 (90.00%), Query Frame = 1


Query: 1  MSVMMADVTAEATMAEMERKIDLLMKAIEERDHEIVALKEQMQARETAES 51
          MSVMMAD+TAEA MAEMERKI+ LMKA+EERDHEI A +EQM+ R+TAES
Sbjct: 1  MSVMMADITAEAAMAEMERKINFLMKAVEERDHEITACREQMRTRKTAES 50

[Close]

BLAST of Cla010605 vs. NCBI nr
Match: gi|659118742|ref|XP_008459280.1| (PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-12
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 1


Query: 1  MSVMMADVTAEATMAEMERKIDLLMKAIEERDHEIVALKEQMQARETAESSQTP 55
          MSVMM D+TAEA M EMERKI+L+MK ++E+DH+I AL+EQMQ  ET +SSQTP
Sbjct: 43 MSVMMVDITAEAAMTEMERKINLVMKVVKEQDHKITALREQMQIHETTKSSQTP 96

[Close]

BLAST of Cla010605 vs. NCBI nr
Match: gi|307136319|gb|ADN34142.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.8e-08
Identity = 33/49 (67.35%), Postives = 42/49 (85.71%), Query Frame = 1


Query: 1   MSVMMADVTAEATMAEMERKIDLLMKAIEERDHEIVALKEQMQARETAE 50
           +SV+MA VTAE TM EMERKI+ LMKA+++RDHEI AL++QM+A  TAE
Sbjct: 82  VSVIMAAVTAETTMVEMERKINFLMKAVKDRDHEITALEDQMKACVTAE 130

The following BLAST results are available for this feature:

BLAST of Cla010605 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCP6_CUCME	8.7e-23	71.43	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GB67_CUCME	2.1e-16	70.77	Retrotransposon gag protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GCE3_CUCME	1.2e-08	67.35	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
E5GBB0_CUCME	5.1e-07	51.72	Ty3-gypsy retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Cla010605 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136441\|gb\|ADN34247.1\|	1.3e-22	71.43	ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]	[more]
gi\|307135838\|gb\|ADN33709.1\|	3.0e-16	70.77	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
gi\|659127214\|ref\|XP_008463585.1\|	1.5e-12	78.00	PREDICTED: uncharacterized protein LOC103501695 [Cucumis melo]	[more]
gi\|659118742\|ref\|XP_008459280.1\|	3.4e-12	68.52	PREDICTED: uncharacterized protein LOC103498458 [Cucumis melo]	[more]
gi\|307136319\|gb\|ADN34142.1\|	1.8e-08	67.35	hypothetical protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla010605	Cla010605.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 14..34 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla010605	Watermelon (97103) v2	wmwmbB406
Cla010605	Wax gourd	wgowmB106
Cla010605	Cucumber (Gy14) v1	cgywmB375
Cla010605	Melon (DHL92) v3.5.1	mewmB438
Cla010605	Watermelon (Charleston Gray)	wcgwmB344
Cla010605	Bottle gourd (USVL1VR-Ls)	lsiwmB040
Cla010605	Melon (DHL92) v3.6.1	medwmB424