Cla006477 (gene) Watermelon (97103) v1

Overview
NameCla006477
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr10 : 14141789 .. 14142384 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCCCGTTCATCTACAGCTAAGACAGCCACAACCACAAAACAATGAAACACCAGCACCAGGGATAAAGCTGGGGTATGTTCTAGCAATCTGTGTTCATGACATATGAATTAAATTCCCTATCAAATTCATATGAATATCAATCTATACTTCTCAACTTTTACTCCCAAGCCATACTGAAATAGATATAATTGAAACTTGCAACAGATTGCAACTGCAATAACAGCAGTTAGATCATGGATGATTTATCCATGGTCAATTCATCAACTGCTTATGGTCATGTTCAACATGAAGATGTCTCCTGCTTCAGTCACTATTGCATTAATGTCACCAGATCCATCACATCTGGTATGCAGTGGTCTTCAGACTCTATATATGCGATAAATTTAGCAGCCAGACCAGCTACATATGTAAGTTTACCAATAATGACAATGCACCATATGTACCATGTGTTGTTCTTGCTGTTTTTAACGATTGTTGTGTTGCGTAATTAGACCAGACTCTAAAGTTGTGATGCCAATTAGCTGA

mRNA sequence

ATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCCCGTTCATCTACAGCTAAGACAGCCACAACCACAAAACAATGAAACACCAGCACCAGGGATAAAGCTGGGACCAGACTCTAAAGTTGTGATGCCAATTAGCTGA

Coding sequence (CDS)

ATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCCCGTTCATCTACAGCTAAGACAGCCACAACCACAAAACAATGAAACACCAGCACCAGGGATAAAGCTGGGACCAGACTCTAAAGTTGTGATGCCAATTAGCTGA

Protein sequence

MEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPAPGIKLGPDSKVVMPIS
Homology
[Close]
BLAST of Cla006477 vs. TrEMBL
Match: A0A0A0KZU2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181200 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-09
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 1 

Query: 1   MEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPAPGIKLG 49
           ME+DKTSSSS  QFTITNRYSMPA   LQLRQPQPQNNET  PGIKLG
Sbjct: 160 MEIDKTSSSS-QQFTITNRYSMPA---LQLRQPQPQNNET--PGIKLG 201

[Close]
BLAST of Cla006477 vs. NCBI nr
Match: gi|659108914|ref|XP_008454453.1| (PREDICTED: MADS-box transcription factor 23 isoform X2 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-10
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 1   MEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPAPGIKLG 49
           ME+DKTSSSS  QFTITNRYSMP    LQLRQPQPQN+ET  PGIKLG
Sbjct: 188 MEIDKTSSSS-QQFTITNRYSMPG---LQLRQPQPQNHETSIPGIKLG 231

[Close]
BLAST of Cla006477 vs. NCBI nr
Match: gi|659108916|ref|XP_008454454.1| (PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-10
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 1   MEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPAPGIKLG 49
           ME+DKTSSSS  QFTITNRYSMP    LQLRQPQPQN+ET  PGIKLG
Sbjct: 190 MEIDKTSSSS-QQFTITNRYSMPG---LQLRQPQPQNHETSIPGIKLG 233

[Close]
BLAST of Cla006477 vs. NCBI nr
Match: gi|659108918|ref|XP_008454455.1| (PREDICTED: MADS-box transcription factor 23 isoform X4 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-10
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 1   MEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPAPGIKLG 49
           ME+DKTSSSS  QFTITNRYSMP    LQLRQPQPQN+ET  PGIKLG
Sbjct: 176 MEIDKTSSSS-QQFTITNRYSMPG---LQLRQPQPQNHETSIPGIKLG 219

[Close]
BLAST of Cla006477 vs. NCBI nr
Match: gi|659108911|ref|XP_008454452.1| (PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-10
Identity = 38/48 (79.17%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 1   MEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPAPGIKLG 49
           ME+DKTSSSS  QFTITNRYSMP    LQLRQPQPQN+ET  PGIKLG
Sbjct: 190 MEIDKTSSSS-QQFTITNRYSMPG---LQLRQPQPQNHETSIPGIKLG 233

[Close]
BLAST of Cla006477 vs. NCBI nr
Match: gi|700198729|gb|KGN53887.1| (hypothetical protein Csa_4G181200 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-09
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 1 

Query: 1   MEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPAPGIKLG 49
           ME+DKTSSSS  QFTITNRYSMPA   LQLRQPQPQNNET  PGIKLG
Sbjct: 160 MEIDKTSSSS-QQFTITNRYSMPA---LQLRQPQPQNNET--PGIKLG 201

The following BLAST results are available for this feature:
BLAST of Cla006477 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZU2_CUCSA1.0e-0983.33Uncharacterized protein OS=Cucumis sativus GN=Csa_4G181200 PE=4 SV=1[more]
BLAST of Cla006477 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108914|ref|XP_008454453.1|8.5e-1079.17PREDICTED: MADS-box transcription factor 23 isoform X2 [Cucumis melo][more]
gi|659108916|ref|XP_008454454.1|8.5e-1079.17PREDICTED: MADS-box transcription factor 23 isoform X3 [Cucumis melo][more]
gi|659108918|ref|XP_008454455.1|8.5e-1079.17PREDICTED: MADS-box transcription factor 23 isoform X4 [Cucumis melo][more]
gi|659108911|ref|XP_008454452.1|8.5e-1079.17PREDICTED: MADS-box transcription factor 23 isoform X1 [Cucumis melo][more]
gi|700198729|gb|KGN53887.1|1.5e-0983.33hypothetical protein Csa_4G181200 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0005488 binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU41709watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006477Cla006477.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU41709WMU41709transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006477Cla97C10G192870Watermelon (97103) v2wmwmbB051
Cla006477Csa4G181200Cucumber (Chinese Long) v2cuwmB295
Cla006477ClCG10G009840Watermelon (Charleston Gray)wcgwmB051
Cla006477CSPI04G11770Wild cucumber (PI 183967)cpiwmB296
Cla006477Cucsa.331900Cucumber (Gy14) v1cgywmB598
Cla006477CmaCh16G002810Cucurbita maxima (Rimu)cmawmB305
Cla006477CmoCh16G003010Cucurbita moschata (Rifu)cmowmB299
Cla006477Lsi03G009820Bottle gourd (USVL1VR-Ls)lsiwmB244
Cla006477Cp4.1LG14g04940Cucurbita pepo (Zucchini)cpewmB216
Cla006477CsGy4G011210Cucumber (Gy14) v2cgybwmB273
Cla006477Carg19722Silver-seed gourdcarwmB0286
Cla006477CsaV3_4G014700Cucumber (Chinese Long) v3cucwmB305
Cla006477Bhi11G000877Wax gourdwgowmB036
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006477Cucumber (Chinese Long) v3cucwmB307
Cla006477Cucumber (Chinese Long) v3cucwmB602
Cla006477Watermelon (97103) v2wmwmbB063
Cla006477Wax gourdwgowmB007
Cla006477Cucumber (Gy14) v1cgywmB421
Cla006477Cucumber (Gy14) v1cgywmB597
Cla006477Cucurbita maxima (Rimu)cmawmB293
Cla006477Cucurbita maxima (Rimu)cmawmB653
Cla006477Cucurbita moschata (Rifu)cmowmB287
Cla006477Cucurbita moschata (Rifu)cmowmB478
Cla006477Cucurbita moschata (Rifu)cmowmB648
Cla006477Wild cucumber (PI 183967)cpiwmB298
Cla006477Wild cucumber (PI 183967)cpiwmB594
Cla006477Melon (DHL92) v3.5.1mewmB217
Cla006477Melon (DHL92) v3.5.1mewmB497
Cla006477Watermelon (Charleston Gray)wcgwmB176
Cla006477Cucumber (Chinese Long) v2cuwmB297
Cla006477Cucumber (Chinese Long) v2cuwmB575
Cla006477Cucurbita pepo (Zucchini)cpewmB204
Cla006477Cucurbita pepo (Zucchini)cpewmB248
Cla006477Cucurbita pepo (Zucchini)cpewmB382
Cla006477Bottle gourd (USVL1VR-Ls)lsiwmB240
Cla006477Bottle gourd (USVL1VR-Ls)lsiwmB245
Cla006477Cucumber (Gy14) v2cgybwmB275
Cla006477Cucumber (Gy14) v2cgybwmB538
Cla006477Melon (DHL92) v3.6.1medwmB214
Cla006477Melon (DHL92) v3.6.1medwmB483
Cla006477Silver-seed gourdcarwmB0283
Cla006477Silver-seed gourdcarwmB0287
Cla006477Silver-seed gourdcarwmB0366