Cla006076 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006076
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related
Location	Chr7 : 2880516 .. 2880899 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAAGAAGCGTTTTCCAATTCTAAGCCTTATCCAAGTTTTTGGAAGGATAGGCTGCAAGCTCCCTTTGAGGAGTCTGAAATAACGAATGTGGTGACGAGCCTTGGCAATTCGAAGTATCCAGAGCCAGTTGGCATGACCAGTGAGTTTTTTAAGTCTTGGATCATTGTTAAAGCATACTTGCTTAAGGTGTTCCAAGATTTTTTTCCTAAAGGAGGTGGTAAACAAGAGAACAAAGGAGGCTTACATTTATCTGGATCCAAAGAAGTTGAAGGCAGAGTTGCGGACTTTCGTCCAATTAGCCTCACTACCATCATTGCCACTGCCAAAGTTCTTCCTGTCTTGAGAAGCTTAGACATTGCTATCGGATTCCATTGCTAA

mRNA sequence

ATGGAAAAAGAAGCGTTTTCCAATTCTAAGCCTTATCCAAGTTTTTGGAAGGATAGGCTGCAAGCTCCCTTTGAGGAGTCTGAAATAACGAATGTGGTGACGAGCCTTGGCAATTCGAAGTATCCAGAGCCAGTTGGCATGACCAGTGAGTTTTTTAAGTCTTGGATCATTGTTAAAGCATACTTGCTTAAGGTGTTCCAAGATTTTTTTCCTAAAGGAGGTGGTAAACAAGAGAACAAAGGAGGCTTACATTTATCTGGATCCAAAGAAGTTGAAGGCAGAGTTGCGGACTTTCGTCCAATTAGCCTCACTACCATCATTGCCACTGCCAAAGTTCTTCCTGTCTTGAGAAGCTTAGACATTGCTATCGGATTCCATTGCTAA

Coding sequence (CDS)

ATGGAAAAAGAAGCGTTTTCCAATTCTAAGCCTTATCCAAGTTTTTGGAAGGATAGGCTGCAAGCTCCCTTTGAGGAGTCTGAAATAACGAATGTGGTGACGAGCCTTGGCAATTCGAAGTATCCAGAGCCAGTTGGCATGACCAGTGAGTTTTTTAAGTCTTGGATCATTGTTAAAGCATACTTGCTTAAGGTGTTCCAAGATTTTTTTCCTAAAGGAGGTGGTAAACAAGAGAACAAAGGAGGCTTACATTTATCTGGATCCAAAGAAGTTGAAGGCAGAGTTGCGGACTTTCGTCCAATTAGCCTCACTACCATCATTGCCACTGCCAAAGTTCTTCCTGTCTTGAGAAGCTTAGACATTGCTATCGGATTCCATTGCTAA

Protein sequence

MEKEAFSNSKPYPSFWKDRLQAPFEESEITNVVTSLGNSKYPEPVGMTSEFFKSWIIVKAYLLKVFQDFFPKGGGKQENKGGLHLSGSKEVEGRVADFRPISLTTIIATAKVLPVLRSLDIAIGFHC

Homology

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BLAST of Cla006076 vs. TrEMBL
Match: A5BSZ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024106 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 1


Query: 19   RLQAPFEESEITNVVTSLGNSKYPEPVGMTSEFFKS-WIIVKAYLLKVFQDFFPKGGGKQ 78
            RL++PF E EI+  +  L   K P P G T   F+  W ++K  L++VF +F   G   Q
Sbjct: 1048 RLESPFTEEEISKAIFQLDRBKAPGPDGFTIAVFQECWDVIKEDLVRVFAEFHRSGIINQ 1107

Query: 79   E-NKGGLHLSGSKEVEGRVADFRPISLTTII--ATAKVL 114
              N   + L   K +  R++DFRPISL T +    AKVL
Sbjct: 1108 STNASFIVLIPKKSLSKRISDFRPISLITSLYKIIAKVL 1146

[Close]

BLAST of Cla006076 vs. TrEMBL
Match: M5WPQ5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016677mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 36/90 (40.00%), Postives = 47/90 (52.22%), Query Frame = 1


Query: 18  DRLQAPFEESEITNVVTSLGNSKYPEPVGMTSEFFKS-WIIVKAYLLKVFQDFFPKG-GG 77
           D L+ PF+  E+   V   G  K P P G +  FF+S W +VK  L+KV QDFF  G   
Sbjct: 698 DWLERPFDLEEVQKAVFDCGKDKSPGPDGFSMSFFQSCWEVVKGDLMKVMQDFFQSGIVN 757

Query: 78  KQENKGGLHLSGSKEVEGRVADFRPISLTT 106
              N+  + L   K    +V D+RPISL T
Sbjct: 758 GVTNETFICLIPKKANSVKVTDYRPISLVT 787

[Close]

BLAST of Cla006076 vs. TrEMBL
Match: M5X4S0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 36/90 (40.00%), Postives = 47/90 (52.22%), Query Frame = 1


Query: 18  DRLQAPFEESEITNVVTSLGNSKYPEPVGMTSEFFKS-WIIVKAYLLKVFQDFFPKG-GG 77
           D L+ PF+  E+   V   G  K P P G +  FF+S W +VK  L+KV QDFF  G   
Sbjct: 165 DWLERPFDLEEVQKAVFDCGKDKSPGPDGFSMSFFQSCWEVVKGDLMKVMQDFFQSGIVN 224

Query: 78  KQENKGGLHLSGSKEVEGRVADFRPISLTT 106
              N+  + L   K    +V D+RPISL T
Sbjct: 225 GVTNETFICLIPKKANSVKVTDYRPISLVT 254

[Close]

BLAST of Cla006076 vs. TrEMBL
Match: M5XHS0_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-06
Identity = 36/90 (40.00%), Postives = 47/90 (52.22%), Query Frame = 1


Query: 18  DRLQAPFEESEITNVVTSLGNSKYPEPVGMTSEFFKS-WIIVKAYLLKVFQDFFPKG-GG 77
           D L+ PF+  E+   V   G  K P P G +  FF+S W +VK  L+KV QDFF  G   
Sbjct: 408 DWLERPFDLEEVQKAVFECGKDKSPGPDGFSMSFFQSCWEVVKGDLMKVMQDFFQSGIVN 467

Query: 78  KQENKGGLHLSGSKEVEGRVADFRPISLTT 106
              N+  + L   K    +V D+RPISL T
Sbjct: 468 GVTNETFICLIPKKANSVKVTDYRPISLVT 497

[Close]

BLAST of Cla006076 vs. TrEMBL
Match: A5BSG1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010061 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.7e-06
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 1


Query: 19   RLQAPFEESEITNVVTSLGNSKYPEPVGMTSEFFKS-WIIVKAYLLKVFQDFFPKGGGKQ 78
            RL +PF E EI+  +  L   K P P G T   F+  W ++K  L++VF +F   G   Q
Sbjct: 1762 RLDSPFTEEEISKTIFQLDRDKAPGPDGFTIAVFQECWDVIKEELVRVFAEFHRSGIINQ 1821

Query: 79   E-NKGGLHLSGSKEVEGRVADFRPISLTTII--ATAKVL 114
              N   + L   K +  R++DFRPISL T +    AKVL
Sbjct: 1822 STNASFIVLLPKKSLSKRISDFRPISLITSLYKIIAKVL 1860

[Close]

BLAST of Cla006076 vs. NCBI nr
Match: gi|147859788|emb|CAN83561.1| (hypothetical protein VITISV_024106 [Vitis vinifera])

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-06
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 1


Query: 19   RLQAPFEESEITNVVTSLGNSKYPEPVGMTSEFFKS-WIIVKAYLLKVFQDFFPKGGGKQ 78
            RL++PF E EI+  +  L   K P P G T   F+  W ++K  L++VF +F   G   Q
Sbjct: 1048 RLESPFTEEEISKAIFQLDRBKAPGPDGFTIAVFQECWDVIKEDLVRVFAEFHRSGIINQ 1107

Query: 79   E-NKGGLHLSGSKEVEGRVADFRPISLTTII--ATAKVL 114
              N   + L   K +  R++DFRPISL T +    AKVL
Sbjct: 1108 STNASFIVLIPKKSLSKRISDFRPISLITSLYKIIAKVL 1146

[Close]

BLAST of Cla006076 vs. NCBI nr
Match: gi|595883970|ref|XP_007212886.1| (hypothetical protein PRUPE_ppa021750mg, partial [Prunus persica])

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-06
Identity = 36/90 (40.00%), Postives = 47/90 (52.22%), Query Frame = 1


Query: 18  DRLQAPFEESEITNVVTSLGNSKYPEPVGMTSEFFKS-WIIVKAYLLKVFQDFFPKG-GG 77
           D L+ PF+  E+   V   G  K P P G +  FF+S W +VK  L+KV QDFF  G   
Sbjct: 165 DWLERPFDLEEVQKAVFDCGKDKSPGPDGFSMSFFQSCWEVVKGDLMKVMQDFFQSGIVN 224

Query: 78  KQENKGGLHLSGSKEVEGRVADFRPISLTT 106
              N+  + L   K    +V D+RPISL T
Sbjct: 225 GVTNETFICLIPKKANSVKVTDYRPISLVT 254

[Close]

BLAST of Cla006076 vs. NCBI nr
Match: gi|595905097|ref|XP_007214027.1| (hypothetical protein PRUPE_ppa016677mg [Prunus persica])

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-06
Identity = 36/90 (40.00%), Postives = 47/90 (52.22%), Query Frame = 1


Query: 18  DRLQAPFEESEITNVVTSLGNSKYPEPVGMTSEFFKS-WIIVKAYLLKVFQDFFPKG-GG 77
           D L+ PF+  E+   V   G  K P P G +  FF+S W +VK  L+KV QDFF  G   
Sbjct: 698 DWLERPFDLEEVQKAVFDCGKDKSPGPDGFSMSFFQSCWEVVKGDLMKVMQDFFQSGIVN 757

Query: 78  KQENKGGLHLSGSKEVEGRVADFRPISLTT 106
              N+  + L   K    +V D+RPISL T
Sbjct: 758 GVTNETFICLIPKKANSVKVTDYRPISLVT 787

[Close]

BLAST of Cla006076 vs. NCBI nr
Match: gi|596230697|ref|XP_007224290.1| (hypothetical protein PRUPE_ppa020085mg, partial [Prunus persica])

HSP 1 Score: 58.5 bits (140), Expect = 9.6e-06
Identity = 36/90 (40.00%), Postives = 47/90 (52.22%), Query Frame = 1


Query: 18  DRLQAPFEESEITNVVTSLGNSKYPEPVGMTSEFFKS-WIIVKAYLLKVFQDFFPKG-GG 77
           D L+ PF+  E+   V   G  K P P G +  FF+S W +VK  L+KV QDFF  G   
Sbjct: 408 DWLERPFDLEEVQKAVFECGKDKSPGPDGFSMSFFQSCWEVVKGDLMKVMQDFFQSGIVN 467

Query: 78  KQENKGGLHLSGSKEVEGRVADFRPISLTT 106
              N+  + L   K    +V D+RPISL T
Sbjct: 468 GVTNETFICLIPKKANSVKVTDYRPISLVT 497

The following BLAST results are available for this feature:

BLAST of Cla006076 vs. TrEMBL


Match Name	E-value	Identity	Description
A5BSZ6_VITVI	6.7e-06	38.38	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024106 PE=4 SV=1	[more]
M5WPQ5_PRUPE	6.7e-06	40.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016677mg PE=4 SV=1	[more]
M5X4S0_PRUPE	6.7e-06	40.00	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021750mg PE=4 S...	[more]
M5XHS0_PRUPE	6.7e-06	40.00	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa020085mg PE=4 S...	[more]
A5BSG1_VITVI	8.7e-06	38.38	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010061 PE=4 SV=1	[more]

BLAST of Cla006076 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147859788\|emb\|CAN83561.1\|	9.6e-06	38.38	hypothetical protein VITISV_024106 [Vitis vinifera]	[more]
gi\|595883970\|ref\|XP_007212886.1\|	9.6e-06	40.00	hypothetical protein PRUPE_ppa021750mg, partial [Prunus persica]	[more]
gi\|595905097\|ref\|XP_007214027.1\|	9.6e-06	40.00	hypothetical protein PRUPE_ppa016677mg [Prunus persica]	[more]
gi\|596230697\|ref\|XP_007224290.1\|	9.6e-06	40.00	hypothetical protein PRUPE_ppa020085mg, partial [Prunus persica]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006076	Cla006076.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006076	ClCG07G000080	Watermelon (Charleston Gray)	wcgwmB373

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006076	Cucurbita maxima (Rimu)	cmawmB487
Cla006076	Cucurbita maxima (Rimu)	cmawmB563
Cla006076	Cucurbita moschata (Rifu)	cmowmB339
Cla006076	Cucurbita moschata (Rifu)	cmowmB481
Cla006076	Cucurbita moschata (Rifu)	cmowmB556
Cla006076	Melon (DHL92) v3.5.1	mewmB407
Cla006076	Watermelon (Charleston Gray)	wcgwmB028
Cla006076	Cucumber (Chinese Long) v2	cuwmB485
Cla006076	Cucurbita pepo (Zucchini)	cpewmB253
Cla006076	Cucurbita pepo (Zucchini)	cpewmB698
Cla006076	Bottle gourd (USVL1VR-Ls)	lsiwmB190
Cla006076	Bottle gourd (USVL1VR-Ls)	lsiwmB356
Cla006076	Melon (DHL92) v3.6.1	medwmB399
Cla006076	Silver-seed gourd	carwmB0749
Cla006076	Silver-seed gourd	carwmB0943
Cla006076	Cucumber (Chinese Long) v3	cucwmB513
Cla006076	Watermelon (97103) v2	wmwmbB186
Cla006076	Watermelon (97103) v2	wmwmbB175
Cla006076	Wax gourd	wgowmB265
Cla006076	Wax gourd	wgowmB613
Cla006076	Watermelon (97103) v1	wmwmB017