ClCG08G009490 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G009490
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionProtein TSSC1
LocationCG_Chr08 : 22095615 .. 22099569 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGCATTTGATTCGTCTTTCATCGAGTGGATCCGAGCTCATATGCGAAGGTTTGTTCTCTCACCCCAATGAGATCTGGGACCTGGCGTCTTGCCCCTTCGACCAGCGCATTTTCTCTACCGTCTTCTCCACTGGTAATTAATTGGGTTTATGTACTTGCTCGAACTCAACTTTCTATCGTGCGTGCTCTCTAGATGTTGCTTTCTATGAATGGATTGGTTTAGTTATTCTTTTAGTTTAGCATTGCTACTTTTAGTTGAACTGATAAGTCAATGATGGAATTAGGCGAGGAGTTTAAGCAATTAGTATAGAACCTATCTGTTTACAGAATGTGGGAATTGTCGAATAACTTTCAGACAGAAAGAGCTTGTTTGATAACGTTCCCGTTTCCTTGTTTCTATTTCTCATTTTTTAAGAAACGGATGTGTCTCATGTTTCGTGTTCCTAAAATTTAAAAATCGTTCCTAAAAGTTTGAGAAATTTTAGGGAACCAGAAAAAATAGTTTCTCCAGTTCTGATCCCAACTTTTCATTCTATTCCTTCTCCCCCAGTTCTAGGGTTCTCTCCATCGACTCCTTCCCCTCAGCCATTGAAGAAAATCAAGGTTGAAGAAAAGCAGCAGTAGCTACTCTCTCCTCCTCTCAAGCTAGGGCACGCACATAGGTATTTCATATCTCTGCAATTTGTGCTTTGTTCACTCTACTCTTCGTGCACAAATTGCAGAGTGAAGTCGAAACGCACATAGGTATTTCATATCTCTGCAATTTGTGCTTTGTTCACTCTACTCTTCGTGCACAAATTGCAGAGTGAAGTCGAATAAATACCTAGTAGAGTGAACAGAGGAATTTGCAAGCTTTGTTCACGCACATAAGAGGTTAAAGAAAAGCAGCAGCACAGGGGGGGTGGGGACCCATTCTGACGAGAGAGCGAGAGAGAACGAGAGAGATAGAGTGATTTTGAGCGAGAGTCAACATATATATATATATATATAAAAGAAACAAGAAACAAGAAACTAACTATCAAACAAATTTCTGTTTCTGTTTCTTTTTTCCAAGAAGCAGGAAACAAGAATAATTATCAAACATATTCCTATTTCTTGTTCTCAAAAAAGAAGAAACAAGAAATAAGAAATAAGAAATAGGGAACGAGAAATAGGAAACAAGAAATGAGAACGTTATCAAACGGTCCCAAAATGTCCAATTCCCGTTGTTAATTCTCAGAAGTCGTGAGAATTGTGGGATTGACTCGTTATTTTTCTGTCATGGCTGCTATTCACATGTTTGCATTCTATCTACAGTTCGCCTCTCAACCATAGTTGTGTGGAGATTCATACTTTTGTTACGGATTCTTCTAAATTCTCTGCTTCCACTTTTCTTTGAGTTGATCCTCTTCCATTTTCTTAAGGTGAAAACTTTGGGGCAGCAATATGGCAAATCCCTGAGTTATATGGTGAATTGAATTCTCCTCAGTTGGAACGGGTTACATCACTTGATGAACATGCTAGTAAGATCAATTGGTGAGTGATTCTCAGAAGCAATTCTTTTTCTTGGTTGCAATTGTGTTCAACTGCATTTGACCTATCTGAATTTCATATTTTATAAAATGCATATACCAAATCAATGTTTTGTTCTACTTATAATTAATCCAAGTAAAATTTATGCTCATTGAATTGTATTTCTCTTTAATATTTTAACCCTCAAATGTTTTCTCTTTCCTTTTCATTAATTTTCTTTTGCTGAGATCCATATGTACTTGTTTCCAATTATAATTCAATTCGTGCACTCCCAAATTTGGGTTCTCTTTCCTAACAAACATTTCTGGACAGTGTTCTTTGGTGGCCATCTGGAAGGCATGATAAGCTGATCAGCATTGATGAGGAAAATATTTTACTATGGAGCTTGGATTGTTCAAGAAAAGCTGCTCAGGTAGACTTAAATAGAAATTGTATGGTCAAGTGATTGGATTCTAAATCGGGCAACTTTCGCTTTTGCACCACGTTGTAGTGTATGCATGGGTAGGCTAAGGTTCAGAGCTATAATTTTTTAGATAAGAGAGAATTCATTAATCAAGAAAAGCTACATTATTGAAGTTAAGGCATCAACCTCAAAACACCAAAAGATTTGAAGTGTTTCTGCAATTGGGGTATATCATAAAGGAATTACAATCATATTGGTTAAAGAACTCCTTGGATGCCTAATGTTGCAATTCTCGTAGTTCTCTATGGAAATATCCATGCATTTGATTTTCTTTTCAAACCAAATCTCAGAAAGAACACTGCTAGAACTGCCTTTTCTCAAAGGTTTATAGCTTTTAGTGGTAAGGGTGATCCACAGCAACTGATCTAGGTAGACATTCCAGAACCTGTTGGAAAAAACCCTAGTATCTTGACACACCATATTATTCTAGAAGTCCCTGCCAATATCTTGTTCACAAAGAGGTAAATTGGTTTTCCTGCTCTTTCTTACACACTACACACCACTGGGGAGAGATAGATAGCTTTGCCCTGATACTGTTTCGAACAAGGTCAGACTTCGTTGACATGAAGGATTCAATAGATTCTGTCAATAATACAACTTTGGTGTGTCTGTTAAGCTTGGTTGTCATATGTATTGAGGCACATATGCCTCAATTCCCAAACGAAAATTTTGATCTTCTTGGGATTGGGATATTGGCCTTTCCTAATAGAAAGGTATAGGTCTTTATCACCTGTGTCTCCTCTCGAGCATAGGGTTCTGTTTAAATATTTCAATTAAAAAGAGCATTTGTGTCTAAATTCCAGCACTAAATGTATGATGATTAATTGAGAATAACCACCTCAAGAGCAACAAGAAGGTTGGCCCAATCCTCAATTTCTTTGCTTATCGTGTCTAGTCTGGGGTGAAAATTCAAAGCTAGCTTGTGAGAGCTCCACATATCAGCCCTGGGGCCCTCCTTTTGGATGCAGAATATCCTTGCCCTGTGAAAGCAAAAAAAAGTTTTTTTAGGATCATAGCAAACTTTTTCTTACTTTCGGTTTTGCCCGAAGGTAGTATCACAGCTTTCTTTCTCATCCAAAACAATTCATAAGTGTTGTCCTTGTCTCTGTGAATGGTCTGATCTGATTGTCGTATAGCCATGGTTTCCCAAGGAGAATGTGACATGCATCCATGTCCAAAACATCACAAACAATTTGATCTTTGTAGTGGTTGCCAATTGAGGGGGCAATTGTTCAATTTCATACACCCTAGACTCCCCACCTTTTTCTGATCCAACTAACCTAGTAGGGTTTAGAGTTGACTGATCTTCCAATTTTTGAGGTTGGTGGTCAACTTCTCAGAAACAGTGTTGTCGCTCCTCGTTGTGAATGATGACTTGGCAAATTTTGTCATTATTGGTGCATCTAGTGCGAAATAGGCAATGATGTTGAGGATAACTTATGGTTTTGGGGGTGAGAAGCACACATGATGTTGAGGATAACTGGAACTTTTTGGACAAATTTGTTGTCTTCTTGAGATTCTTCCATCTCGTTCTTGCACTCCAAAGTTGTAGATTTAAAAACTGCACCATAGGCTATAGCAGACTATTTATATGAGCTAACCAACCAAAACAACCAACGACCAGTAAACATGTGTTTTACAAAGAATTAAAAGACTTAAAGTAAAATCTCACAGTAAAAGTAAAACCCCTCAGTAACTGACAATAAAACATAACAATGTTTGATTCATTTGTCATATTGACTAGTTAAGTTAGATGCTATGAAATGGCAATTTATTTTCAAGTATTTGTGATGATCTTATTTGGGGCTTATTACAATCTAGGTACAATCGAAGGAGTCAGCTGGGATGCTTCATTATTTGTCTGGAGGGACGTGGGATCCACATGATTCAAATGCTATTGCAGCAACTAGTGAATCATCCGTTCAACTTTGGGATTTAAGGACAATGAAGTATGCCATCATTTATGCTTTATGTTTTTGA

mRNA sequence

GTGCATTTGATTCGTCTTTCATCGAGTGGATCCGAGCTCATATGCGAAGGTTTGTTCTCTCACCCCAATGAGATCTGGGACCTGGCGTCTTGCCCCTTCGACCAGCGCATTTTCTCTACCGTCTTCTCCACTGGTGAAAACTTTGGGGCAGCAATATGGCAAATCCCTGAGTTATATGGTGAATTGAATTCTCCTCAGTTGGAACGGGTTACATCACTTGATGAACATGCTAGTAAGATCAATTGTGTTCTTTGGTGGCCATCTGGAAGGCATGATAAGCTGATCAGCATTGATGAGGAAAATATTTTACTATGGAGCTTGGATTGTTCAAGAAAAGCTGCTCAGGTACAATCGAAGGAGTCAGCTGGGATGCTTCATTATTTGTCTGGAGGGACGTGGGATCCACATGATTCAAATGCTATTGCAGCAACTAGTGAATCATCCGTTCAACTTTGGGATTTAAGGACAATGAAGTATGCCATCATTTATGCTTTATGTTTTTGA

Coding sequence (CDS)

GTGCATTTGATTCGTCTTTCATCGAGTGGATCCGAGCTCATATGCGAAGGTTTGTTCTCTCACCCCAATGAGATCTGGGACCTGGCGTCTTGCCCCTTCGACCAGCGCATTTTCTCTACCGTCTTCTCCACTGGTGAAAACTTTGGGGCAGCAATATGGCAAATCCCTGAGTTATATGGTGAATTGAATTCTCCTCAGTTGGAACGGGTTACATCACTTGATGAACATGCTAGTAAGATCAATTGTGTTCTTTGGTGGCCATCTGGAAGGCATGATAAGCTGATCAGCATTGATGAGGAAAATATTTTACTATGGAGCTTGGATTGTTCAAGAAAAGCTGCTCAGGTACAATCGAAGGAGTCAGCTGGGATGCTTCATTATTTGTCTGGAGGGACGTGGGATCCACATGATTCAAATGCTATTGCAGCAACTAGTGAATCATCCGTTCAACTTTGGGATTTAAGGACAATGAAGTATGCCATCATTTATGCTTTATGTTTTTGA

Protein sequence

VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKESAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMKYAIIYALCF
Homology
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BLAST of ClCG08G009490 vs. Swiss-Prot
Match: DWA2_ARATH (WD repeat-containing protein DWA2 OS=Arabidopsis thaliana GN=DWA2 PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.7e-67
Identity = 119/158 (75.32%), Postives = 134/158 (84.81%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHL+RLSS GSEL+CEGLFSHPNEIWDLAS PFDQRIFSTVFSTG+++GAAIWQIPE YG
Sbjct: 44  VHLLRLSSGGSELLCEGLFSHPNEIWDLASSPFDQRIFSTVFSTGDSYGAAIWQIPEPYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           + NS  LE V SLD H  KINCVLW PSG  DKLIS+DE+N++ WSLD S+K+A+V SKE
Sbjct: 104 QSNSSTLECVASLDAHVGKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEVLSKE 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           SAGM H LSGG W+PHD N++AATSESS+Q WDLRTMK
Sbjct: 164 SAGMRHSLSGGAWNPHDVNSVAATSESSIQFWDLRTMK 201

[Close]
BLAST of ClCG08G009490 vs. Swiss-Prot
Match: TSSC1_DICDI (Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-13
Identity = 51/175 (29.14%), Postives = 84/175 (48.00%), Query Frame = 1 

Query: 7   SSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFST---GEN---------------- 66
           +  G  + C  +F HP EI  + SCPFD  +F +V++T   G N                
Sbjct: 53  AKEGEGVRCLSIFPHPKEIHSITSCPFDSSLFFSVYNTSGGGNNNSNNTNNNDNTNNNTN 112

Query: 67  ---FGAAIWQIPELYGELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILL 126
              F +++W+I E     +   +E +  L  H   I  +L  PSG ++ +IS+D+ NI L
Sbjct: 113 NNDFKSSLWRINE-----SMDSIEELFELKGHTGIIKPILCDPSGSNNFIISLDDSNIRL 172

Query: 127 WS-LDCSRKAAQVQSKESAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           WS +D   +   +   +  G L  LS G+ +P+ SN +A  ++ +++ WD R  K
Sbjct: 173 WSKIDDQNEPTVI---KQFGNLSKLSVGSINPNISNQLATANDVNIKGWDFRNAK 219

[Close]
BLAST of ClCG08G009490 vs. Swiss-Prot
Match: TSSC1_DANRE (Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-13
Identity = 52/176 (29.55%), Postives = 86/176 (48.86%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFS-TGEN---FGAAIWQIP 60
           +H+I      + +    L     EIW ++  P D+ + +T ++ T E+     AA+W++P
Sbjct: 43  IHIIDFDDENNMINKSVLLHDAGEIWHISGSPADKAVLTTCYNKTSESRVLTCAAVWRMP 102

Query: 61  ELY---------GELNSPQ-LERVTSLDEHA-SKINCVLWWPSGRHDKLISIDEENILLW 120
             +            N+PQ LE +  LD  A   + CVLW P G   ++IS+ E ++LLW
Sbjct: 103 PEWESGNHESPDDSSNNPQTLELLCHLDNSAHGSMACVLWEPMGDGKRVISLAENHVLLW 162

Query: 121 SLDCSRKAAQVQSK---ESAGMLHYLSGGTWDP-HDSNAIAATSESSVQLWDLRTM 158
            L  S   A + S    E  G L + + G W P H+   +A  ++++++ WDLR+M
Sbjct: 163 DLQESSAKATISSSATLEGKGQLKF-TAGKWSPHHNCTQLATANDTAIRGWDLRSM 217

[Close]
BLAST of ClCG08G009490 vs. Swiss-Prot
Match: TSSC1_XENLA (Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.2e-13
Identity = 50/177 (28.25%), Postives = 84/177 (47.46%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFG----AAIWQIP 60
           +H+I      + +    L  H  EIW + + P D+ + +T ++   +      AA+W+IP
Sbjct: 43  IHVIDFDDENNIINKNVLLHHAGEIWQIGASPADRNVLATCYNKISDSKVMTCAAVWRIP 102

Query: 61  -ELYG---------ELNSPQLERVTSLDEHA-SKINCVLWWPSGRHDKLISIDEENILLW 120
            EL G           N+  LE +  LD  A   + CV W P G   KL+S+ +  +L+W
Sbjct: 103 KELQGGNHESPDDTSSNAQSLELLCHLDSTAHGNMACVTWEPLGDGKKLLSLADNYLLIW 162

Query: 121 SLDCSRKAAQVQSK---ESAGMLHYLSGGTWDP-HDSNAIAATSESSVQLWDLRTMK 159
            L  S   + + S    E  G L + S G W P H+   +A  ++++++ WD+R+M+
Sbjct: 163 DLQESSTKSVLSSSATLEGKGQLRFTS-GKWSPHHNCTQVATANDTAIRGWDIRSMR 218

[Close]
BLAST of ClCG08G009490 vs. Swiss-Prot
Match: TSSC1_XENTR (Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-12
Identity = 49/177 (27.68%), Postives = 86/177 (48.59%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFG----AAIWQIP 60
           +H+I      + +    L  H  EIW +++ P D+ + +T ++   +      AA+W+IP
Sbjct: 43  IHVIDFDDENNIINKNILLHHAGEIWQISASPADRNVLATCYNKISDSKVLTCAAVWRIP 102

Query: 61  -ELYG---------ELNSPQLERVTSLDEHA-SKINCVLWWPSGRHDKLISIDEENILLW 120
            EL G           N+  LE +  LD  A   + CV W P G   KL+S+ +  +++W
Sbjct: 103 KELQGGNHESPDDTSSNAQALELLCHLDNTAHGNMACVTWEPLGDGKKLLSLADNYLMIW 162

Query: 121 SLDCSRKAAQVQSK---ESAGMLHYLSGGTWDP-HDSNAIAATSESSVQLWDLRTMK 159
            L  S   + + S    E  G L + S G W P H+   +A  ++++++ WD+R+M+
Sbjct: 163 DLQESSTKSVLSSSVTLEGKGQLRFTS-GKWSPHHNCTQVATANDTAIRGWDIRSMR 218

[Close]
BLAST of ClCG08G009490 vs. TrEMBL
Match: A0A0A0KDH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358120 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.3e-85
Identity = 152/158 (96.20%), Postives = 154/158 (97.47%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHLIRLSSSGSELICEGLFSHPNEIWDLASCPF+QRIFSTVFSTGENFGAAIWQIPELYG
Sbjct: 51  VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFEQRIFSTVFSTGENFGAAIWQIPELYG 110

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           ELNSPQLERVTSLDEHASKINCV+WWPSGRHDKLISIDEENI LWSLDCSRK AQVQSKE
Sbjct: 111 ELNSPQLERVTSLDEHASKINCVIWWPSGRHDKLISIDEENIFLWSLDCSRKTAQVQSKE 170

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           SAGMLHY SGGTWDPHDSNAIAATSESSVQ WDLRTMK
Sbjct: 171 SAGMLHYFSGGTWDPHDSNAIAATSESSVQFWDLRTMK 208

[Close]
BLAST of ClCG08G009490 vs. TrEMBL
Match: B9H5G3_POPTR (Transducin family protein OS=Populus trichocarpa GN=POPTR_0005s27120g PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.3e-78
Identity = 136/158 (86.08%), Postives = 148/158 (93.67%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHL+RLSS G+ELICEGLFSHPNEIWDL+SCPFDQRIFSTVFSTGE+FGAA+WQIPELYG
Sbjct: 44  VHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESFGAAVWQIPELYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           +LNSPQLER+ SLD H  K+NC+LWWPSGR+DKLISIDEEN+ LWSLDCSRKAAQVQSKE
Sbjct: 104 QLNSPQLERIASLDGHVGKVNCILWWPSGRNDKLISIDEENLFLWSLDCSRKAAQVQSKE 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           SAGMLHYLSGG WDPHD NA+AAT ESSVQ WDLRTMK
Sbjct: 164 SAGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRTMK 201

[Close]
BLAST of ClCG08G009490 vs. TrEMBL
Match: A0A0D2TVY8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G267800 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.0e-78
Identity = 136/158 (86.08%), Postives = 148/158 (93.67%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHLIRLSS G+ELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGE++GAAIWQIPELYG
Sbjct: 44  VHLIRLSSGGTELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGESYGAAIWQIPELYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           +LNSPQLER+ SLD H +KINCVLWWPSGRHDKL+SID+ENI LW+LDCS+KAAQVQSKE
Sbjct: 104 QLNSPQLERIASLDAHVAKINCVLWWPSGRHDKLLSIDDENIFLWTLDCSKKAAQVQSKE 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           S+GMLHYLSGG WDPHD NA+A T ESSVQ WDLRTMK
Sbjct: 164 SSGMLHYLSGGAWDPHDMNAVATTCESSVQFWDLRTMK 201

[Close]
BLAST of ClCG08G009490 vs. TrEMBL
Match: A0A0D2TSC6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G267800 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.0e-78
Identity = 136/158 (86.08%), Postives = 148/158 (93.67%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHLIRLSS G+ELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGE++GAAIWQIPELYG
Sbjct: 44  VHLIRLSSGGTELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGESYGAAIWQIPELYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           +LNSPQLER+ SLD H +KINCVLWWPSGRHDKL+SID+ENI LW+LDCS+KAAQVQSKE
Sbjct: 104 QLNSPQLERIASLDAHVAKINCVLWWPSGRHDKLLSIDDENIFLWTLDCSKKAAQVQSKE 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           S+GMLHYLSGG WDPHD NA+A T ESSVQ WDLRTMK
Sbjct: 164 SSGMLHYLSGGAWDPHDMNAVATTCESSVQFWDLRTMK 201

[Close]
BLAST of ClCG08G009490 vs. TrEMBL
Match: A0A0D2QNS3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G267800 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.0e-78
Identity = 136/158 (86.08%), Postives = 148/158 (93.67%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHLIRLSS G+ELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGE++GAAIWQIPELYG
Sbjct: 44  VHLIRLSSGGTELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGESYGAAIWQIPELYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           +LNSPQLER+ SLD H +KINCVLWWPSGRHDKL+SID+ENI LW+LDCS+KAAQVQSKE
Sbjct: 104 QLNSPQLERIASLDAHVAKINCVLWWPSGRHDKLLSIDDENIFLWTLDCSKKAAQVQSKE 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           S+GMLHYLSGG WDPHD NA+A T ESSVQ WDLRTMK
Sbjct: 164 SSGMLHYLSGGAWDPHDMNAVATTCESSVQFWDLRTMK 201

[Close]
BLAST of ClCG08G009490 vs. TAIR10
Match: AT1G20540.1 (AT1G20540.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 291.6 bits (745), Expect = 3.1e-79
Identity = 136/158 (86.08%), Postives = 143/158 (90.51%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHL+RLSS GSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGE+FGAAIWQIPELYG
Sbjct: 44  VHLLRLSSGGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGESFGAAIWQIPELYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           +LNSPQLERV SLD H  KINCVLWWPSGR DKLISIDE+NI LWSLDCS+K+A+V SK+
Sbjct: 104 QLNSPQLERVASLDAHVGKINCVLWWPSGRCDKLISIDEQNIFLWSLDCSKKSAEVLSKD 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           SAGMLH LSGG WDPHD NA+AAT ESSVQ WDLRTMK
Sbjct: 164 SAGMLHSLSGGAWDPHDVNAVAATGESSVQFWDLRTMK 201

[Close]
BLAST of ClCG08G009490 vs. TAIR10
Match: AT1G76260.1 (AT1G76260.1 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2)

HSP 1 Score: 255.0 bits (650), Expect = 3.2e-68
Identity = 119/158 (75.32%), Postives = 134/158 (84.81%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHL+RLSS GSEL+CEGLFSHPNEIWDLAS PFDQRIFSTVFSTG+++GAAIWQIPE YG
Sbjct: 44  VHLLRLSSGGSELLCEGLFSHPNEIWDLASSPFDQRIFSTVFSTGDSYGAAIWQIPEPYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           + NS  LE V SLD H  KINCVLW PSG  DKLIS+DE+N++ WSLD S+K+A+V SKE
Sbjct: 104 QSNSSTLECVASLDAHVGKINCVLWCPSGNSDKLISMDEQNLVFWSLDSSKKSAEVLSKE 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           SAGM H LSGG W+PHD N++AATSESS+Q WDLRTMK
Sbjct: 164 SAGMRHSLSGGAWNPHDVNSVAATSESSIQFWDLRTMK 201

[Close]
BLAST of ClCG08G009490 vs. NCBI nr
Match: gi|659129829|ref|XP_008464867.1| (PREDICTED: WD repeat-containing protein DWA2-like isoform X1 [Cucumis melo])

HSP 1 Score: 325.9 bits (834), Expect = 4.2e-86
Identity = 155/158 (98.10%), Postives = 156/158 (98.73%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFS GENFGAAIWQIPELYG
Sbjct: 44  VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSNGENFGAAIWQIPELYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE
Sbjct: 104 ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           SAGMLHYLSGGTWDPHDSNAIAATSESS+Q WDLRTMK
Sbjct: 164 SAGMLHYLSGGTWDPHDSNAIAATSESSIQFWDLRTMK 201

[Close]
BLAST of ClCG08G009490 vs. NCBI nr
Match: gi|449452963|ref|XP_004144228.1| (PREDICTED: WD repeat-containing protein DWA2-like [Cucumis sativus])

HSP 1 Score: 321.2 bits (822), Expect = 1.0e-84
Identity = 152/158 (96.20%), Postives = 154/158 (97.47%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHLIRLSSSGSELICEGLFSHPNEIWDLASCPF+QRIFSTVFSTGENFGAAIWQIPELYG
Sbjct: 51  VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFEQRIFSTVFSTGENFGAAIWQIPELYG 110

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           ELNSPQLERVTSLDEHASKINCV+WWPSGRHDKLISIDEENI LWSLDCSRK AQVQSKE
Sbjct: 111 ELNSPQLERVTSLDEHASKINCVIWWPSGRHDKLISIDEENIFLWSLDCSRKTAQVQSKE 170

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           SAGMLHY SGGTWDPHDSNAIAATSESSVQ WDLRTMK
Sbjct: 171 SAGMLHYFSGGTWDPHDSNAIAATSESSVQFWDLRTMK 208

[Close]
BLAST of ClCG08G009490 vs. NCBI nr
Match: gi|224086020|ref|XP_002307781.1| (transducin family protein [Populus trichocarpa])

HSP 1 Score: 299.7 bits (766), Expect = 3.2e-78
Identity = 136/158 (86.08%), Postives = 148/158 (93.67%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHL+RLSS G+ELICEGLFSHPNEIWDL+SCPFDQRIFSTVFSTGE+FGAA+WQIPELYG
Sbjct: 44  VHLLRLSSGGTELICEGLFSHPNEIWDLSSCPFDQRIFSTVFSTGESFGAAVWQIPELYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           +LNSPQLER+ SLD H  K+NC+LWWPSGR+DKLISIDEEN+ LWSLDCSRKAAQVQSKE
Sbjct: 104 QLNSPQLERIASLDGHVGKVNCILWWPSGRNDKLISIDEENLFLWSLDCSRKAAQVQSKE 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           SAGMLHYLSGG WDPHD NA+AAT ESSVQ WDLRTMK
Sbjct: 164 SAGMLHYLSGGAWDPHDVNAVAATCESSVQFWDLRTMK 201

[Close]
BLAST of ClCG08G009490 vs. NCBI nr
Match: gi|763792703|gb|KJB59699.1| (hypothetical protein B456_009G267800 [Gossypium raimondii])

HSP 1 Score: 299.3 bits (765), Expect = 4.2e-78
Identity = 136/158 (86.08%), Postives = 148/158 (93.67%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHLIRLSS G+ELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGE++GAAIWQIPELYG
Sbjct: 44  VHLIRLSSGGTELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGESYGAAIWQIPELYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           +LNSPQLER+ SLD H +KINCVLWWPSGRHDKL+SID+ENI LW+LDCS+KAAQVQSKE
Sbjct: 104 QLNSPQLERIASLDAHVAKINCVLWWPSGRHDKLLSIDDENIFLWTLDCSKKAAQVQSKE 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           S+GMLHYLSGG WDPHD NA+A T ESSVQ WDLRTMK
Sbjct: 164 SSGMLHYLSGGAWDPHDMNAVATTCESSVQFWDLRTMK 201

[Close]
BLAST of ClCG08G009490 vs. NCBI nr
Match: gi|763792704|gb|KJB59700.1| (hypothetical protein B456_009G267800 [Gossypium raimondii])

HSP 1 Score: 299.3 bits (765), Expect = 4.2e-78
Identity = 136/158 (86.08%), Postives = 148/158 (93.67%), Query Frame = 1 

Query: 1   VHLIRLSSSGSELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGENFGAAIWQIPELYG 60
           VHLIRLSS G+ELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGE++GAAIWQIPELYG
Sbjct: 44  VHLIRLSSGGTELICEGLFSHPNEIWDLASCPFDQRIFSTVFSTGESYGAAIWQIPELYG 103

Query: 61  ELNSPQLERVTSLDEHASKINCVLWWPSGRHDKLISIDEENILLWSLDCSRKAAQVQSKE 120
           +LNSPQLER+ SLD H +KINCVLWWPSGRHDKL+SID+ENI LW+LDCS+KAAQVQSKE
Sbjct: 104 QLNSPQLERIASLDAHVAKINCVLWWPSGRHDKLLSIDDENIFLWTLDCSKKAAQVQSKE 163

Query: 121 SAGMLHYLSGGTWDPHDSNAIAATSESSVQLWDLRTMK 159
           S+GMLHYLSGG WDPHD NA+A T ESSVQ WDLRTMK
Sbjct: 164 SSGMLHYLSGGAWDPHDMNAVATTCESSVQFWDLRTMK 201

The following BLAST results are available for this feature:
BLAST of ClCG08G009490 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DWA2_ARATH5.7e-6775.32WD repeat-containing protein DWA2 OS=Arabidopsis thaliana GN=DWA2 PE=1 SV=1[more]
TSSC1_DICDI2.8e-1329.14Protein tssc1 homolog OS=Dictyostelium discoideum GN=tssc1 PE=1 SV=1[more]
TSSC1_DANRE4.8e-1329.55Protein TSSC1 OS=Danio rerio GN=tssc1 PE=2 SV=1[more]
TSSC1_XENLA6.2e-1328.25Protein TSSC1 OS=Xenopus laevis GN=tssc1 PE=2 SV=1[more]
TSSC1_XENTR1.4e-1227.68Protein TSSC1 OS=Xenopus tropicalis GN=tssc1 PE=2 SV=1[more]
BLAST of ClCG08G009490 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDH1_CUCSA7.3e-8596.20Uncharacterized protein OS=Cucumis sativus GN=Csa_6G358120 PE=4 SV=1[more]
B9H5G3_POPTR2.3e-7886.08Transducin family protein OS=Populus trichocarpa GN=POPTR_0005s27120g PE=4 SV=1[more]
A0A0D2TVY8_GOSRA3.0e-7886.08Uncharacterized protein OS=Gossypium raimondii GN=B456_009G267800 PE=4 SV=1[more]
A0A0D2TSC6_GOSRA3.0e-7886.08Uncharacterized protein OS=Gossypium raimondii GN=B456_009G267800 PE=4 SV=1[more]
A0A0D2QNS3_GOSRA3.0e-7886.08Uncharacterized protein OS=Gossypium raimondii GN=B456_009G267800 PE=4 SV=1[more]
BLAST of ClCG08G009490 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G20540.13.1e-7986.08 Transducin/WD40 repeat-like superfamily protein[more]
AT1G76260.13.2e-6875.32 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 2[more]
BLAST of ClCG08G009490 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129829|ref|XP_008464867.1|4.2e-8698.10PREDICTED: WD repeat-containing protein DWA2-like isoform X1 [Cucumis melo][more]
gi|449452963|ref|XP_004144228.1|1.0e-8496.20PREDICTED: WD repeat-containing protein DWA2-like [Cucumis sativus][more]
gi|224086020|ref|XP_002307781.1|3.2e-7886.08transducin family protein [Populus trichocarpa][more]
gi|763792703|gb|KJB59699.1|4.2e-7886.08hypothetical protein B456_009G267800 [Gossypium raimondii][more]
gi|763792704|gb|KJB59700.1|4.2e-7886.08hypothetical protein B456_009G267800 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0009788 negative regulation of abscisic acid-activated signaling pathway
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0080008 Cul4-RING E3 ubiquitin ligase complex
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G009490.1ClCG08G009490.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domainGENE3DG3DSA:2.130.10.10coord: 18..158
score: 1.0
IPR017986WD40-repeat-containing domainPROFILEPS50294WD_REPEATS_REGIONcoord: 73..162
score: 8
IPR017986WD40-repeat-containing domainunknownSSF50978WD40 repeat-likecoord: 13..159
score: 9.16
NoneNo IPR availablePANTHERPTHR14205WD-REPEAT PROTEINcoord: 1..158
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G009490Csa6G358120Cucumber (Chinese Long) v2cuwcgB496
ClCG08G009490MELO3C026544Melon (DHL92) v3.5.1mewcgB298
ClCG08G009490Cla021944Watermelon (97103) v1wcgwmB408
ClCG08G009490Cla97C08G152310Watermelon (97103) v2wcgwmbB337
ClCG08G009490Bhi04G001232Wax gourdwcgwgoB639
ClCG08G009490CSPI06G18750Wild cucumber (PI 183967)cpiwcgB532
ClCG08G009490CmaCh12G006720Cucurbita maxima (Rimu)cmawcgB175
ClCG08G009490CmaCh05G009890Cucurbita maxima (Rimu)cmawcgB711
ClCG08G009490CmoCh05G010070Cucurbita moschata (Rifu)cmowcgB715
ClCG08G009490Lsi08G008000Bottle gourd (USVL1VR-Ls)lsiwcgB438
ClCG08G009490Cp4.1LG11g08030Cucurbita pepo (Zucchini)cpewcgB124
ClCG08G009490CsGy6G018200Cucumber (Gy14) v2cgybwcgB463
ClCG08G009490MELO3C026544.2Melon (DHL92) v3.6.1medwcgB291
ClCG08G009490Carg17650Silver-seed gourdcarwcgB0129
ClCG08G009490Carg21869Silver-seed gourdcarwcgB0205
ClCG08G009490CsaV3_6G031630Cucumber (Chinese Long) v3cucwcgB514
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G009490Silver-seed gourdcarwcgB0342
ClCG08G009490Watermelon (97103) v2wcgwmbB336
ClCG08G009490Wax gourdwcgwgoB626
ClCG08G009490Cucumber (Gy14) v1cgywcgB079
ClCG08G009490Cucurbita maxima (Rimu)cmawcgB710
ClCG08G009490Cucurbita moschata (Rifu)cmowcgB166
ClCG08G009490Cucurbita moschata (Rifu)cmowcgB714
ClCG08G009490Wild cucumber (PI 183967)cpiwcgB522
ClCG08G009490Melon (DHL92) v3.5.1mewcgB296
ClCG08G009490Watermelon (97103) v1wcgwmB400
ClCG08G009490Cucurbita pepo (Zucchini)cpewcgB123
ClCG08G009490Cucurbita pepo (Zucchini)cpewcgB756
ClCG08G009490Cucumber (Gy14) v2cgybwcgB454
ClCG08G009490Melon (DHL92) v3.6.1medwcgB289