ClCG02G004940 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G004940
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Myb family transcription factor family protein
Location	CG_Chr02 : 5249604 .. 5249843 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCTCAATGTTGCAAAGGCCATTGGCGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAAGATGTTAAGCATATTGAGTCGGGTGAAATTCCTTTTCCCTATGGAAGCTCTACAAGATAG

mRNA sequence

ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCTCAATGTTGCAAAGGCCATTGGCGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAAGATGTTAAGCATATTGAGTCGGGTGAAATTCCTTTTCCCTATGGAAGCTCTACAAGATAG

Coding sequence (CDS)

ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCTCAATGTTGCAAAGGCCATTGGCGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAAGATGTTAAGCATATTGAGTCGGGTGAAATTCCTTTTCCCTATGGAAGCTCTACAAGATAG

Protein sequence

MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPFPYGSSTR

Homology

[Close]

BLAST of ClCG02G004940 vs. Swiss-Prot
Match: RAD_ANTMA (Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.1e-23
Identity = 45/69 (65.22%), Postives = 58/69 (84.06%), Query Frame = 1


Query: 5  SAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKH 64
          S  G   PW+ K+NKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IESGEIPFP 74
          IESG++PFP
Sbjct: 63 IESGKVPFP 71

[Close]

BLAST of ClCG02G004940 vs. Swiss-Prot
Match: RADL1_ARATH (Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.0e-22
Identity = 50/74 (67.57%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 1  MASISAFGPST-PWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLV 60
          MAS S    S+  WT KQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIESGEIPFP 74
          +D+  IE+G +PFP
Sbjct: 61 QDINSIENGHVPFP 74

[Close]

BLAST of ClCG02G004940 vs. Swiss-Prot
Match: RADL2_ARATH (Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.5e-22
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 3  SISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV 62
          S+S++G S  WT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LLV D+
Sbjct: 5  SMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIESGEIPFP 74
          + IE+G +PFP
Sbjct: 65 ESIENGHVPFP 74

[Close]

BLAST of ClCG02G004940 vs. Swiss-Prot
Match: RADL6_ARATH (Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.0e-21
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1


Query: 11 TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEI 70
          +PWT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 71 PFP 74
          P P
Sbjct: 70 PLP 72

[Close]

BLAST of ClCG02G004940 vs. Swiss-Prot
Match: RADL5_ARATH (Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.2e-20
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS S+   S+ WT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVE
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKHIESGEIPFP 74
          D+ +IE   +P P
Sbjct: 61 DLMNIEQDLVPLP 72

[Close]

BLAST of ClCG02G004940 vs. TrEMBL
Match: A0A0A0K3K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.0e-28
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G S+ WT  +NKAFEKALA+YD+DTPERWLNVAKAIGGKTEEEVKRHYQLL+E
Sbjct: 1  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYGSSTR 80
          DV HIESG+IPFPY  STR
Sbjct: 61 DVNHIESGQIPFPYRKSTR 78

[Close]

BLAST of ClCG02G004940 vs. TrEMBL
Match: A0A0A0K344_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.6e-28
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G S  WT KQNKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLL+E
Sbjct: 1  MASLSAHG-SGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYGSS 78
          DVKHIESG++PFPY SS
Sbjct: 61 DVKHIESGKVPFPYRSS 76

[Close]

BLAST of ClCG02G004940 vs. TrEMBL
Match: A0A0A0K3K5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169590 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-26
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS++A GPST WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKHIESGEIPFP 74
          DVKHIESG +  P
Sbjct: 61 DVKHIESGRLIEP 73

[Close]

BLAST of ClCG02G004940 vs. TrEMBL
Match: A0A0A0K348_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.2e-26
Identity = 60/77 (77.92%), Postives = 67/77 (87.01%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+S+ G  T WT  QNKAFEKALAVYDQDTP+RWLNVAKA+GGKT EEVKRHY LLVE
Sbjct: 1  MASMSSHGSGT-WTVTQNKAFEKALAVYDQDTPDRWLNVAKAVGGKTAEEVKRHYALLVE 60

Query: 61 DVKHIESGEIPFPYGSS 78
          DVK IESG++PFPY +S
Sbjct: 61 DVKFIESGQVPFPYRTS 76

[Close]

BLAST of ClCG02G004940 vs. TrEMBL
Match: W9QGR5_9ROSA (DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-24
Identity = 53/66 (80.30%), Postives = 61/66 (92.42%), Query Frame = 1


Query: 13 WTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEIPF 72
          WT KQNKAFEKALAVYD+DTP+RW NVAKA+GGKT EEVKRHY+LL+EDVKHIESG++PF
Sbjct: 9  WTAKQNKAFEKALAVYDKDTPDRWYNVAKAVGGKTAEEVKRHYELLLEDVKHIESGQVPF 68

Query: 73 PYGSST 79
          PY  +T
Sbjct: 69 PYYRTT 74

[Close]

BLAST of ClCG02G004940 vs. TAIR10
Match: AT4G39250.1 (AT4G39250.1 RAD-like 1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-23
Identity = 50/74 (67.57%), Postives = 56/74 (75.68%), Query Frame = 1


Query: 1  MASISAFGPST-PWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLV 60
          MAS S    S+  WT KQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIESGEIPFP 74
          +D+  IE+G +PFP
Sbjct: 61 QDINSIENGHVPFP 74

[Close]

BLAST of ClCG02G004940 vs. TAIR10
Match: AT2G21650.1 (AT2G21650.1 Homeodomain-like superfamily protein)

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-23
Identity = 48/71 (67.61%), Postives = 57/71 (80.28%), Query Frame = 1


Query: 3  SISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV 62
          S+S++G S  WT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LLV D+
Sbjct: 5  SMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIESGEIPFP 74
          + IE+G +PFP
Sbjct: 65 ESIENGHVPFP 74

[Close]

BLAST of ClCG02G004940 vs. TAIR10
Match: AT1G75250.1 (AT1G75250.1 RAD-like 6)

HSP 1 Score: 101.3 bits (251), Expect = 2.8e-22
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1


Query: 11 TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGEI 70
          +PWT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+G +
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 71 PFP 74
          P P
Sbjct: 70 PLP 72

[Close]

BLAST of ClCG02G004940 vs. TAIR10
Match: AT1G19510.1 (AT1G19510.1 RAD-like 5)

HSP 1 Score: 98.2 bits (243), Expect = 2.4e-21
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS S+   S+ WT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVE
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKHIESGEIPFP 74
          D+ +IE   +P P
Sbjct: 61 DLMNIEQDLVPLP 72

[Close]

BLAST of ClCG02G004940 vs. TAIR10
Match: AT2G18328.1 (AT2G18328.1 RAD-like 4)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-17
Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1


Query: 10 STPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESGE 69
          ++ WT +++K FE ALA +D+DTP+RW  +A+A+GGK+ EEVKRHY+LL+ DV  IESG 
Sbjct: 8  TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELLLRDVNDIESGR 67

Query: 70 IPFP 74
           P P
Sbjct: 68 YPQP 71

[Close]

BLAST of ClCG02G004940 vs. NCBI nr
Match: gi|778725452|ref|XP_011658943.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 4.2e-28
Identity = 64/79 (81.01%), Postives = 71/79 (89.87%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G S+ WT  +NKAFEKALA+YD+DTPERWLNVAKAIGGKTEEEVKRHYQLL+E
Sbjct: 1  MASMSAHG-SSAWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYGSSTR 80
          DV HIESG+IPFPY  STR
Sbjct: 61 DVNHIESGQIPFPYRKSTR 78

[Close]

BLAST of ClCG02G004940 vs. NCBI nr
Match: gi|659092353|ref|XP_008447026.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 131.7 bits (330), Expect = 5.5e-28
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G ST WT  +NKAFEKALA+YD+DTPERWLNVAKAIGGKTEE+VKRHYQLL+E
Sbjct: 1  MASMSAHG-STQWTAIENKAFEKALAIYDKDTPERWLNVAKAIGGKTEEDVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYGSSTR 80
          DV HIE+G+IPFPY +STR
Sbjct: 61 DVNHIENGQIPFPYRNSTR 78

[Close]

BLAST of ClCG02G004940 vs. NCBI nr
Match: gi|449466805|ref|XP_004151116.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G S  WT KQNKAFE+ALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLL+E
Sbjct: 1  MASLSAHG-SGVWTAKQNKAFEEALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYGSS 78
          DVKHIESG++PFPY SS
Sbjct: 61 DVKHIESGKVPFPYRSS 76

[Close]

BLAST of ClCG02G004940 vs. NCBI nr
Match: gi|659092351|ref|XP_008447025.1| (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G S  WT KQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLL+E
Sbjct: 1  MASMSAHG-SGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIESGEIPFPYGSS 78
          DVKHIESG++PFPY +S
Sbjct: 61 DVKHIESGKVPFPYRTS 76

[Close]

BLAST of ClCG02G004940 vs. NCBI nr
Match: gi|700188845|gb|KGN44078.1| (hypothetical protein Csa_7G169590 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.8e-26
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS++A GPST WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKHIESGEIPFP 74
          DVKHIESG +  P
Sbjct: 61 DVKHIESGRLIEP 73

The following BLAST results are available for this feature:

BLAST of ClCG02G004940 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAD_ANTMA	4.1e-23	65.22	Transcription factor RADIALIS OS=Antirrhinum majus GN=RAD PE=1 SV=1	[more]
RADL1_ARATH	2.0e-22	67.57	Protein RADIALIS-like 1 OS=Arabidopsis thaliana GN=RL1 PE=2 SV=1	[more]
RADL2_ARATH	4.5e-22	67.61	Protein RADIALIS-like 2 OS=Arabidopsis thaliana GN=RL2 PE=2 SV=1	[more]
RADL6_ARATH	5.0e-21	69.84	Protein RADIALIS-like 6 OS=Arabidopsis thaliana GN=RL6 PE=2 SV=1	[more]
RADL5_ARATH	4.2e-20	63.01	Protein RADIALIS-like 5 OS=Arabidopsis thaliana GN=RL5 PE=3 SV=1	[more]

BLAST of ClCG02G004940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3K0_CUCSA	3.0e-28	81.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G168060 PE=4 SV=1	[more]
A0A0A0K344_CUCSA	8.6e-28	81.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169070 PE=4 SV=1	[more]
A0A0A0K3K5_CUCSA	1.2e-26	83.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169590 PE=4 SV=1	[more]
A0A0A0K348_CUCSA	6.2e-26	77.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G170600 PE=4 SV=1	[more]
W9QGR5_9ROSA	1.2e-24	80.30	DnaJ homolog subfamily C member 2 OS=Morus notabilis GN=L484_018551 PE=4 SV=1	[more]

BLAST of ClCG02G004940 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39250.1	1.1e-23	67.57	RAD-like 1	[more]
AT2G21650.1	2.6e-23	67.61	Homeodomain-like superfamily protein	[more]
AT1G75250.1	2.8e-22	69.84	RAD-like 6	[more]
AT1G19510.1	2.4e-21	63.01	RAD-like 5	[more]
AT2G18328.1	1.2e-17	56.25	RAD-like 4	[more]

BLAST of ClCG02G004940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778725452\|ref\|XP_011658943.1\|	4.2e-28	81.01	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|659092353\|ref\|XP_008447026.1\|	5.5e-28	79.75	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|449466805\|ref\|XP_004151116.1\|	1.2e-27	81.82	PREDICTED: protein RADIALIS-like 1 [Cucumis sativus]	[more]
gi\|659092351\|ref\|XP_008447025.1\|	1.2e-27	81.82	PREDICTED: protein RADIALIS-like 1 [Cucumis melo]	[more]
gi\|700188845\|gb\|KGN44078.1\|	1.8e-26	83.56	hypothetical protein Csa_7G169590 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G004940.1	ClCG02G004940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 12..57 score: 1.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 9..61 score: 6.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 13..65 score: 1.
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 11..67 score: 1.17
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 12..59 score: 6
None	No IPR available	PANTHER	PTHR24078	DNAJ HOMOLOG SUBFAMILY C MEMBER	coord: 10..72 score: 6.9
None	No IPR available	PANTHER	PTHR24078:SF177	PROTEIN DNJ-23-RELATED	coord: 10..72 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G004940	Bhi10G001619	Wax gourd	wcgwgoB286
ClCG02G004940	CmaCh19G006700	Cucurbita maxima (Rimu)	cmawcgB460
ClCG02G004940	Cp4.1LG16g02320	Cucurbita pepo (Zucchini)	cpewcgB267

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G004940	Wax gourd	wcgwgoB275
ClCG02G004940	Watermelon (Charleston Gray)	wcgwcgB063
ClCG02G004940	Cucumber (Gy14) v1	cgywcgB156
ClCG02G004940	Cucumber (Gy14) v1	cgywcgB429
ClCG02G004940	Cucurbita maxima (Rimu)	cmawcgB098
ClCG02G004940	Cucurbita maxima (Rimu)	cmawcgB485
ClCG02G004940	Cucurbita maxima (Rimu)	cmawcgB531
ClCG02G004940	Cucurbita moschata (Rifu)	cmowcgB089
ClCG02G004940	Cucurbita moschata (Rifu)	cmowcgB459
ClCG02G004940	Cucurbita moschata (Rifu)	cmowcgB485
ClCG02G004940	Cucurbita moschata (Rifu)	cmowcgB530
ClCG02G004940	Wild cucumber (PI 183967)	cpiwcgB131
ClCG02G004940	Wild cucumber (PI 183967)	cpiwcgB577
ClCG02G004940	Cucumber (Chinese Long) v2	cuwcgB127
ClCG02G004940	Melon (DHL92) v3.5.1	mewcgB111
ClCG02G004940	Melon (DHL92) v3.5.1	mewcgB196
ClCG02G004940	Watermelon (97103) v1	wcgwmB198
ClCG02G004940	Watermelon (97103) v1	wcgwmB217
ClCG02G004940	Cucurbita pepo (Zucchini)	cpewcgB233
ClCG02G004940	Cucurbita pepo (Zucchini)	cpewcgB591
ClCG02G004940	Cucurbita pepo (Zucchini)	cpewcgB662
ClCG02G004940	Bottle gourd (USVL1VR-Ls)	lsiwcgB057
ClCG02G004940	Bottle gourd (USVL1VR-Ls)	lsiwcgB097
ClCG02G004940	Cucumber (Gy14) v2	cgybwcgB122
ClCG02G004940	Cucumber (Gy14) v2	cgybwcgB508
ClCG02G004940	Melon (DHL92) v3.6.1	medwcgB106
ClCG02G004940	Melon (DHL92) v3.6.1	medwcgB191
ClCG02G004940	Silver-seed gourd	carwcgB0167
ClCG02G004940	Silver-seed gourd	carwcgB0308
ClCG02G004940	Silver-seed gourd	carwcgB0868
ClCG02G004940	Cucumber (Chinese Long) v3	cucwcgB140
ClCG02G004940	Cucumber (Chinese Long) v3	cucwcgB573
ClCG02G004940	Watermelon (97103) v2	wcgwmbB137
ClCG02G004940	Watermelon (97103) v2	wcgwmbB138