ClCG01G003880 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGCATTTTTGCTCTTCTTCTTACCCTTAGCCCCCTCTTTTTCTCTCAGAATCCGAAGAACAAACGAAAACTGAACAAACCCGTCTCTTTCTTCTCCATTCATCTGATTCCACTGAAGCAACGAAGAACAGCTCCATTTTTCCATTTCCCCTGCTTTTGGATCTTCTCTCATGGTACCCTTTATCTTTGTCTCTCTGTATTTTTCCCTCGTTTAATTTCTGATTGCATTTTCTGGGCAATGATTAACTATTTCGAACTTCAGTAAAGTGACTTCCATTATTGTCTCTAGTTGAAGCAGTTTTTCTTTTGGCCCATTAAAAGGGCAGAATCGTTTGTTGTGAATAGTTATGTATTAATTGTAAACACCTCTAAAGATGAGCTGAAATAATGGTCAACTTTGGGATCTTGTGAATTATATCATTTGGGAGATGATTGGATGGAATGGAGTTCTCTTTATTGATTTCAGAATGGACCCATTTCTGTTCTTGTAATGTTATAATATTTGAGGGAAGTAGTACTGGAAGCTTCACTTCAATTTGTTGATAATTGTTTAATGTTTTTAATTTCTAAAGGAGGGGGAGGGGTTTGTGGTAGGTTACCTTATTTGCATCATACATCTTCAAGTGTTGCAATGTTAACATTTTCTTGTGGAAATCTGTCTCAGTAGTTTTGGAGCTGAAATTTGACGTTTCCTTTTAGATAATTTACAATGATGGCTGCCGGTTATCGAAATCGTCCATGTGAAGCATTCTTTATGTTGTGGCTAAAGACGCGAGTTTCTCTCCAATGTGAGGTATTATCTGATTAAGGGAGAATGTTGGTGCAAGGAGATTTTAGTTTAGATTCGAGGCAAATGTATTCTGATTCCTTTAAAGAAGCACTGAGGCAAACCATGCTGAGTCAGGAGGTTATGTTTAGGAAACAGGTATTAGCTGCACATTTTATCCTCTGTCGCCACTTTTATATTCAAGAGTTGGTACCTTTCTGAATTCATGATCTCCAATGAGGCTTTTACTTAACTGTAACTTGTTGTGCTACTTATTCATCTCCTCATATTGCTCCAGGTTCTTCAATTACATCAATTGTACAGTGTACAAAGGATACTAATGCAGAATTTTGGCTTTGAAGAGTTTGATCGATGCAGTTTTAAGAAAGCAGGGATAAAACCAATTTTCATGCCATATGCATATCCCAAAAGATATGATCCATTAGTGAAAGAAACTGAAGTTTCCTCGATTCGCATGGTAAATGATTTTCTGACTTTTAGGAGTGTAGTGTACTGTCTTTAGTGTAAGAGTTTCCAAAGAAAAGGAAAAAAAAAAAACGATTGTAGGATACTCAAATTCTTTGCGATGATGAATGACTAAAACTTTTCTTTTACCACTTCCAAGATTCAATTTTCTAGCTTTGATGAGATATACTTTCCTGATAGCTTGAAAAGCATCCAGCTAAAAACTACAAGCTTCGGCACAGGCCTCTCGATTTGCAGCTTCCTCCAGATCAGTACGTTAGCCTCATTGGTAAGGGTTCTCAAATGTAGCTGATCTCAATATAATTAAATTCAAAAAGTAAGATTTCTTGTTGTGGTGGTAATCTTTGAGAACCAGACTTGGAGTTAGATCTTTCCCTTGATCTCAAAATGGGGCATCCAGAAAAGGAGAATGCCGATGAAATACTTTCAAACAAGAAGTCTCGTCGCATGCTCTCTAAAGAAGTTATTGATTTGGAAGATTCAATTGATGGGGATGCAGAAAATGTATATTCTTTAGATCTAAATGTTCCAACAATTCAATGCATAGGTAAGGGTTAGTCTCATGATTCTTCTTATTGAGATGTAATGATCATTTTTGTTTTTGGAGGGGTATTTTCAGTCTTCTTTCTGTTTATCTTATTTCCATTTAGCATTTCTCAAGTGCTGTCTTTTCTGTAGAATTTGAAAACAGCCATGATCATATCTCAAGTGACAATCTCTCTATCAAGAATGAGCAGTTGGGAACCAATGAAGCAAGATATCTGGACCTTAATGAAGCTCAGAACAATGATTTGATTATGACTCACTATTCAACCTGGAGCTCGTCACCTGGTTTCAAGGGAACAGTTGGCAATGGACAACAAGCTAATTGCTCCTCACCAATTTGGATCAGAGAGAAGAATAACAGTTCTACTGAATCTTCCACACTTGAACAAGACGCAAATGTAGATGTGATGGACTGTGGTAGTAGAAATGAGAGAACTGAAACTCATGCAACAGAGTCCAAGTTTAAGGGAACAAGTACAGGTGAAATCACTAAAATGTATAACTGTCAATATGATGAAGTTCCAGTGGAATCAACAGTAAACTTTTCTAAAGACTTCAGTAATTGTTATGATGACGAAAGTAAAAAATTTGAGGCAGTAATTGAGCCTCCTGCTGTGGAAGATGGTTGCAATAGCATATTGACGGTGACAGTATCCAGTTTGTCTACTTGTAATGCAGAAAATGACTCAGGTGGGGAGAAGGTGCAAAATTTGAGTCTCCCCATGTCTAACCAGTGTTATGAAACAGAAACCATCTTTTCCATTGAGAAAGATCTTAGGTCTTCTGGTAGCATTGAATCAGAACAGGATGAAGAATCTTCCGAAATGAAAGTTCTACTTCAAAACGCGGTCGAAACACTTATGTGTATGTCTTTGGCTGATTCAGTCTTTGATCATGATAATAACACAAAAACAGAATCTAATGACATGGGGAAGGATCAGGTGGATCAACCACAACATTCTTGTGATTCCTTTGAGTTACTAGTTTTAAACCAAACGGAAAACAATGAAGACGACGAGTTCTCCGTATCATCATCACAATTATCTGAAGTAACTGACATGGGGAATATGAATTTCGGCGTTAAATTGAGGAGGGGAAGAAGACTGAAAGACTTCCGAAGAGATATACTTCCTGGTCTATCCTGTCTTTCAAGACATGAGATTTGTGAAGATATTAACATTATGGAGGCTGTTCTAAGGTCAAGAGAATACCAAAAAATCCGAGGTAAAATGCAAGATGGACAGAAAGGGTGCCCTCCCACGAAAAGTAAGCGATCTCGATCTCGATCTCGGCTAACTAAAACGAGGCAAAGAATCATTTTGTGAAAGTTCTTTCATAGGTGAGATTGCTTTTGAAATGCTGCTTTGTTGTAGGCTGAAGATTACCTGAAATAACTTATAGGCAAATTGTGTGTTGTAGTTAAATGAAGATTCAATTTATTCTGACCATTTAATTGTTGAAACAAACCTGTGTATAGGATTGATAAACTCGAAAG CGCATTTTTGCTCTTCTTCTTACCCTTAGCCCCCTCTTTTTCTCTCAGAATCCGAAGAACAAACGAAAACTGAACAAACCCGTCTCTTTCTTCTCCATTCATCTGATTCCACTGAAGCAACGAAGAACAGCTCCATTTTTCCATTTCCCCTGCTTTTGGATCTTCTCTCATGATAATTTACAATGATGGCTGCCGGTTATCGAAATCGTCCATGTGAAGCATTCTTTATGTTGTGGCTAAAGACGCGAGTTTCTCTCCAATGTGAGGTATTATCTGATTAAGGGAGAATGTTGGTGCAAGGAGATTTTAGTTTAGATTCGAGGCAAATGTATTCTGATTCCTTTAAAGAAGCACTGAGGCAAACCATGCTGAGTCAGGAGGTTATGTTTAGGAAACAGGTTCTTCAATTACATCAATTGTACAGTGTACAAAGGATACTAATGCAGAATTTTGGCTTTGAAGAGTTTGATCGATGCAGTTTTAAGAAAGCAGGGATAAAACCAATTTTCATGCCATATGCATATCCCAAAAGATATGATCCATTAGTGAAAGAAACTGAAGTTTCCTCGATTCGCATGCTTGAAAAGCATCCAGCTAAAAACTACAAGCTTCGGCACAGGCCTCTCGATTTGCAGCTTCCTCCAGATCAGTACGTTAGCCTCATTGAACCAGACTTGGAGTTAGATCTTTCCCTTGATCTCAAAATGGGGCATCCAGAAAAGGAGAATGCCGATGAAATACTTTCAAACAAGAAGTCTCGTCGCATGCTCTCTAAAGAAGTTATTGATTTGGAAGATTCAATTGATGGGGATGCAGAAAATGTATATTCTTTAGATCTAAATGTTCCAACAATTCAATGCATAGAATTTGAAAACAGCCATGATCATATCTCAAGTGACAATCTCTCTATCAAGAATGAGCAGTTGGGAACCAATGAAGCAAGATATCTGGACCTTAATGAAGCTCAGAACAATGATTTGATTATGACTCACTATTCAACCTGGAGCTCGTCACCTGGTTTCAAGGGAACAGTTGGCAATGGACAACAAGCTAATTGCTCCTCACCAATTTGGATCAGAGAGAAGAATAACAGTTCTACTGAATCTTCCACACTTGAACAAGACGCAAATGTAGATGTGATGGACTGTGGTAGTAGAAATGAGAGAACTGAAACTCATGCAACAGAGTCCAAGTTTAAGGGAACAAGTACAGGTGAAATCACTAAAATGTATAACTGTCAATATGATGAAGTTCCAGTGGAATCAACAGTAAACTTTTCTAAAGACTTCAGTAATTGTTATGATGACGAAAGTAAAAAATTTGAGGCAGTAATTGAGCCTCCTGCTGTGGAAGATGGTTGCAATAGCATATTGACGGTGACAGTATCCAGTTTGTCTACTTGTAATGCAGAAAATGACTCAGGTGGGGAGAAGGTGCAAAATTTGAGTCTCCCCATGTCTAACCAGTGTTATGAAACAGAAACCATCTTTTCCATTGAGAAAGATCTTAGGTCTTCTGGTAGCATTGAATCAGAACAGGATGAAGAATCTTCCGAAATGAAAGTTCTACTTCAAAACGCGGTCGAAACACTTATGTGTATGTCTTTGGCTGATTCAGTCTTTGATCATGATAATAACACAAAAACAGAATCTAATGACATGGGGAAGGATCAGGTGGATCAACCACAACATTCTTGTGATTCCTTTGAGTTACTAGTTTTAAACCAAACGGAAAACAATGAAGACGACGAGTTCTCCGTATCATCATCACAATTATCTGAAGTAACTGACATGGGGAATATGAATTTCGGCGTTAAATTGAGGAGGGGAAGAAGACTGAAAGACTTCCGAAGAGATATACTTCCTGGTCTATCCTGTCTTTCAAGACATGAGATTTGTGAAGATATTAACATTATGGAGGCTGTTCTAAGGTCAAGAGAATACCAAAAAATCCGAGGTAAAATGCAAGATGGACAGAAAGGGTGCCCTCCCACGAAAAGTAAGCGATCTCGATCTCGATCTCGGCTAACTAAAACGAGGCAAAGAATCATTTTGTGAAAGTTCTTTCATAGGTGAGATTGCTTTTGAAATGCTGCTTTGTTGTAGGCTGAAGATTACCTGAAATAACTTATAGGCAAATTGTGTGTTGTAGTTAAATGAAGATTCAATTTATTCTGACCATTTAATTGTTGAAACAAACCTGTGTATAGGATTGATAAACTCGAAAG ATGTTGGTGCAAGGAGATTTTAGTTTAGATTCGAGGCAAATGTATTCTGATTCCTTTAAAGAAGCACTGAGGCAAACCATGCTGAGTCAGGAGGTTATGTTTAGGAAACAGGTTCTTCAATTACATCAATTGTACAGTGTACAAAGGATACTAATGCAGAATTTTGGCTTTGAAGAGTTTGATCGATGCAGTTTTAAGAAAGCAGGGATAAAACCAATTTTCATGCCATATGCATATCCCAAAAGATATGATCCATTAGTGAAAGAAACTGAAGTTTCCTCGATTCGCATGCTTGAAAAGCATCCAGCTAAAAACTACAAGCTTCGGCACAGGCCTCTCGATTTGCAGCTTCCTCCAGATCAGTACGTTAGCCTCATTGAACCAGACTTGGAGTTAGATCTTTCCCTTGATCTCAAAATGGGGCATCCAGAAAAGGAGAATGCCGATGAAATACTTTCAAACAAGAAGTCTCGTCGCATGCTCTCTAAAGAAGTTATTGATTTGGAAGATTCAATTGATGGGGATGCAGAAAATGTATATTCTTTAGATCTAAATGTTCCAACAATTCAATGCATAGAATTTGAAAACAGCCATGATCATATCTCAAGTGACAATCTCTCTATCAAGAATGAGCAGTTGGGAACCAATGAAGCAAGATATCTGGACCTTAATGAAGCTCAGAACAATGATTTGATTATGACTCACTATTCAACCTGGAGCTCGTCACCTGGTTTCAAGGGAACAGTTGGCAATGGACAACAAGCTAATTGCTCCTCACCAATTTGGATCAGAGAGAAGAATAACAGTTCTACTGAATCTTCCACACTTGAACAAGACGCAAATGTAGATGTGATGGACTGTGGTAGTAGAAATGAGAGAACTGAAACTCATGCAACAGAGTCCAAGTTTAAGGGAACAAGTACAGGTGAAATCACTAAAATGTATAACTGTCAATATGATGAAGTTCCAGTGGAATCAACAGTAAACTTTTCTAAAGACTTCAGTAATTGTTATGATGACGAAAGTAAAAAATTTGAGGCAGTAATTGAGCCTCCTGCTGTGGAAGATGGTTGCAATAGCATATTGACGGTGACAGTATCCAGTTTGTCTACTTGTAATGCAGAAAATGACTCAGGTGGGGAGAAGGTGCAAAATTTGAGTCTCCCCATGTCTAACCAGTGTTATGAAACAGAAACCATCTTTTCCATTGAGAAAGATCTTAGGTCTTCTGGTAGCATTGAATCAGAACAGGATGAAGAATCTTCCGAAATGAAAGTTCTACTTCAAAACGCGGTCGAAACACTTATGTGTATGTCTTTGGCTGATTCAGTCTTTGATCATGATAATAACACAAAAACAGAATCTAATGACATGGGGAAGGATCAGGTGGATCAACCACAACATTCTTGTGATTCCTTTGAGTTACTAGTTTTAAACCAAACGGAAAACAATGAAGACGACGAGTTCTCCGTATCATCATCACAATTATCTGAAGTAACTGACATGGGGAATATGAATTTCGGCGTTAAATTGAGGAGGGGAAGAAGACTGAAAGACTTCCGAAGAGATATACTTCCTGGTCTATCCTGTCTTTCAAGACATGAGATTTGTGAAGATATTAACATTATGGAGGCTGTTCTAAGGTCAAGAGAATACCAAAAAATCCGAGGTAAAATGCAAGATGGACAGAAAGGGTGCCCTCCCACGAAAAGTAAGCGATCTCGATCTCGATCTCGGCTAACTAAAACGAGGCAAAGAATCATTTTGTGA MLVQGDFSLDSRQMYSDSFKEALRQTMLSQEVMFRKQVLQLHQLYSVQRILMQNFGFEEFDRCSFKKAGIKPIFMPYAYPKRYDPLVKETEVSSIRMLEKHPAKNYKLRHRPLDLQLPPDQYVSLIEPDLELDLSLDLKMGHPEKENADEILSNKKSRRMLSKEVIDLEDSIDGDAENVYSLDLNVPTIQCIEFENSHDHISSDNLSIKNEQLGTNEARYLDLNEAQNNDLIMTHYSTWSSSPGFKGTVGNGQQANCSSPIWIREKNNSSTESSTLEQDANVDVMDCGSRNERTETHATESKFKGTSTGEITKMYNCQYDEVPVESTVNFSKDFSNCYDDESKKFEAVIEPPAVEDGCNSILTVTVSSLSTCNAENDSGGEKVQNLSLPMSNQCYETETIFSIEKDLRSSGSIESEQDEESSEMKVLLQNAVETLMCMSLADSVFDHDNNTKTESNDMGKDQVDQPQHSCDSFELLVLNQTENNEDDEFSVSSSQLSEVTDMGNMNFGVKLRRGRRLKDFRRDILPGLSCLSRHEICEDINIMEAVLRSREYQKIRGKMQDGQKGCPPTKSKRSRSRSRLTKTRQRIIL
BLAST of ClCG01G003880 vs. TrEMBL
Match: A0A0A0KMU7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G160760 PE=4 SV=1) HSP 1 Score: 869.4 bits (2245), Expect = 2.5e-249 Identity = 468/616 (75.97%), Postives = 507/616 (82.31%), Query Frame = 1
BLAST of ClCG01G003880 vs. TrEMBL
Match: F6HCZ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0233g00190 PE=4 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 8.9e-45 Identity = 139/412 (33.74%), Postives = 213/412 (51.70%), Query Frame = 1
BLAST of ClCG01G003880 vs. TrEMBL
Match: F6HCZ2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0233g00190 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.9e-18 Identity = 94/316 (29.75%), Postives = 145/316 (45.89%), Query Frame = 1
HSP 2 Score: 188.7 bits (478), Expect = 2.0e-44 Identity = 135/412 (32.77%), Postives = 209/412 (50.73%), Query Frame = 1
BLAST of ClCG01G003880 vs. TrEMBL
Match: F6HP96_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0154g00200 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 2.4e-18 Identity = 93/316 (29.43%), Postives = 145/316 (45.89%), Query Frame = 1
HSP 2 Score: 181.8 bits (460), Expect = 2.4e-42 Identity = 111/227 (48.90%), Postives = 149/227 (65.64%), Query Frame = 1
BLAST of ClCG01G003880 vs. TrEMBL
Match: A0A061G3G6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_016013 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 2.3e-16 Identity = 53/124 (42.74%), Postives = 75/124 (60.48%), Query Frame = 1
HSP 2 Score: 174.1 bits (440), Expect = 5.0e-40 Identity = 106/225 (47.11%), Postives = 147/225 (65.33%), Query Frame = 1
BLAST of ClCG01G003880 vs. TAIR10
Match: AT1G12120.1 (AT1G12120.1 Plant protein of unknown function (DUF863)) HSP 1 Score: 124.8 bits (312), Expect = 1.8e-28 Identity = 119/447 (26.62%), Postives = 200/447 (44.74%), Query Frame = 1
BLAST of ClCG01G003880 vs. TAIR10
Match: AT1G62530.1 (AT1G62530.1 Plant protein of unknown function (DUF863)) HSP 1 Score: 99.8 bits (247), Expect = 6.1e-21 Identity = 69/184 (37.50%), Postives = 96/184 (52.17%), Query Frame = 1
BLAST of ClCG01G003880 vs. TAIR10
Match: AT1G26620.1 (AT1G26620.1 Plant protein of unknown function (DUF863)) HSP 1 Score: 61.2 bits (147), Expect = 2.4e-09 Identity = 38/102 (37.25%), Postives = 53/102 (51.96%), Query Frame = 1
HSP 2 Score: 42.0 bits (97), Expect = 1.5e-03 Identity = 33/126 (26.19%), Postives = 55/126 (43.65%), Query Frame = 1
BLAST of ClCG01G003880 vs. TAIR10
Match: AT5G07790.1 (AT5G07790.1 unknown protein) HSP 1 Score: 52.4 bits (124), Expect = 1.1e-06 Identity = 59/219 (26.94%), Postives = 89/219 (40.64%), Query Frame = 1
BLAST of ClCG01G003880 vs. TAIR10
Match: AT1G13940.1 (AT1G13940.1 Plant protein of unknown function (DUF863)) HSP 1 Score: 50.8 bits (120), Expect = 3.3e-06 Identity = 37/136 (27.21%), Postives = 66/136 (48.53%), Query Frame = 1
HSP 2 Score: 40.8 bits (94), Expect = 3.4e-03 Identity = 16/43 (37.21%), Postives = 28/43 (65.12%), Query Frame = 1
BLAST of ClCG01G003880 vs. NCBI nr
Match: gi|659073552|ref|XP_008437122.1| (PREDICTED: uncharacterized protein LOC103482637 isoform X2 [Cucumis melo]) HSP 1 Score: 881.3 bits (2276), Expect = 9.2e-253 Identity = 473/616 (76.79%), Postives = 508/616 (82.47%), Query Frame = 1
BLAST of ClCG01G003880 vs. NCBI nr
Match: gi|659073550|ref|XP_008437121.1| (PREDICTED: uncharacterized protein LOC103482637 isoform X1 [Cucumis melo]) HSP 1 Score: 872.8 bits (2254), Expect = 3.3e-250 Identity = 474/634 (74.76%), Postives = 509/634 (80.28%), Query Frame = 1
BLAST of ClCG01G003880 vs. NCBI nr
Match: gi|449459764|ref|XP_004147616.1| (PREDICTED: uncharacterized protein LOC101221869 [Cucumis sativus]) HSP 1 Score: 869.4 bits (2245), Expect = 3.6e-249 Identity = 468/616 (75.97%), Postives = 507/616 (82.31%), Query Frame = 1
BLAST of ClCG01G003880 vs. NCBI nr
Match: gi|470125326|ref|XP_004298654.1| (PREDICTED: uncharacterized protein LOC101312925 [Fragaria vesca subsp. vesca]) HSP 1 Score: 208.8 bits (530), Expect = 2.7e-50 Identity = 206/635 (32.44%), Postives = 300/635 (47.24%), Query Frame = 1
BLAST of ClCG01G003880 vs. NCBI nr
Match: gi|731438350|ref|XP_010646546.1| (PREDICTED: uncharacterized protein LOC100250510 isoform X1 [Vitis vinifera]) HSP 1 Score: 189.9 bits (481), Expect = 1.3e-44 Identity = 139/412 (33.74%), Postives = 213/412 (51.70%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |