Carg25962 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25962
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin-responsive protein
Location	Cucurbita_argyrosperma_scaffold_284 : 107023 .. 107469 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCGGTGATGGCGAAAAGCAACAAGATCCGGAGCATTGTCCGGCTCCGACAAATGTTACAACACTGGCGGAAGAAGGCACGTGCAGCGGCCTCCAGAGCACCGCCGCCTGATGTCCCCGCTGATCACGTTGCCGTATGCGTTGGCAGTGGCTGTCGGCGATTCATTGTCCGTGCGTCGTTCCTGAACCATCCGATCTTCCGGAAGTTGCTCTCACAGGCTGAAGAGGAATACGGCTTCGCTACGCGAGGTCCTCTGGCGCTTCCGTGCGACGAATCGGTTTTCGAAGAGGTTATCCGAGTCATTGCTCGCTCCGAGTTGAATAACTCGTCGCGAAGTTCGAGTCTCAAGGATTTGCAGAGGCGATGCGATAAAGATGTCAGAAAAAACCTCGAGTATTTAGGCGAATCGAGACCTTTACTGTACGGATTCGCTGATAGTTGA

mRNA sequence

ATGTCGTCGGTGATGGCGAAAAGCAACAAGATCCGGAGCATTGTCCGGCTCCGACAAATGTTACAACACTGGCGGAAGAAGGCACGTGCAGCGGCCTCCAGAGCACCGCCGCCTGATGTCCCCGCTGATCACGTTGCCGTATGCGTTGGCAGTGGCTGTCGGCGATTCATTGTCCGTGCGTCGTTCCTGAACCATCCGATCTTCCGGAAGTTGCTCTCACAGGCTGAAGAGGAATACGGCTTCGCTACGCGAGGTCCTCTGGCGCTTCCGTGCGACGAATCGGTTTTCGAAGAGGTTATCCGAGTCATTGCTCGCTCCGAGTTGAATAACTCGTCGCGAAGTTCGAGTCTCAAGGATTTGCAGAGGCGATGCGATAAAGATGTCAGAAAAAACCTCGAGTATTTAGGCGAATCGAGACCTTTACTGTACGGATTCGCTGATAGTTGA

Coding sequence (CDS)

ATGTCGTCGGTGATGGCGAAAAGCAACAAGATCCGGAGCATTGTCCGGCTCCGACAAATGTTACAACACTGGCGGAAGAAGGCACGTGCAGCGGCCTCCAGAGCACCGCCGCCTGATGTCCCCGCTGATCACGTTGCCGTATGCGTTGGCAGTGGCTGTCGGCGATTCATTGTCCGTGCGTCGTTCCTGAACCATCCGATCTTCCGGAAGTTGCTCTCACAGGCTGAAGAGGAATACGGCTTCGCTACGCGAGGTCCTCTGGCGCTTCCGTGCGACGAATCGGTTTTCGAAGAGGTTATCCGAGTCATTGCTCGCTCCGAGTTGAATAACTCGTCGCGAAGTTCGAGTCTCAAGGATTTGCAGAGGCGATGCGATAAAGATGTCAGAAAAAACCTCGAGTATTTAGGCGAATCGAGACCTTTACTGTACGGATTCGCTGATAGTTGA

Protein sequence

MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFADS

Homology

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BLAST of Carg25962 vs. NCBI nr
Match: XP_022943918.1 (auxin-responsive protein SAUR50-like [Cucurbita moschata])

HSP 1 Score: 293.9 bits (751), Expect = 3.1e-76
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60
           MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA
Sbjct: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60

Query: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL 120
           SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL
Sbjct: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL 120

Query: 121 QRRCDKDVRKNLEYLGESRPLLYGFADS 149
           QRRCDKDVRKNLEYLGESRPLLYGFADS
Sbjct: 121 QRRCDKDVRKNLEYLGESRPLLYGFADS 148

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BLAST of Carg25962 vs. NCBI nr
Match: XP_022986631.1 (auxin-responsive protein SAUR50-like [Cucurbita maxima])

HSP 1 Score: 293.1 bits (749), Expect = 5.2e-76
Identity = 147/148 (99.32%), Postives = 148/148 (100.00%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60
           MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA
Sbjct: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60

Query: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL 120
           SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSS+KDL
Sbjct: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSIKDL 120

Query: 121 QRRCDKDVRKNLEYLGESRPLLYGFADS 149
           QRRCDKDVRKNLEYLGESRPLLYGFADS
Sbjct: 121 QRRCDKDVRKNLEYLGESRPLLYGFADS 148

[Close]

BLAST of Carg25962 vs. NCBI nr
Match: XP_023512602.1 (auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288.5 bits (737), Expect = 1.3e-74
Identity = 145/148 (97.97%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60
           MSSV+AKSNKIRSIVRLRQMLQHWRKKARAAASRAPP DVPADHVAVCVGSGCRRFIVRA
Sbjct: 1   MSSVVAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPTDVPADHVAVCVGSGCRRFIVRA 60

Query: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL 120
           SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSS+KDL
Sbjct: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSIKDL 120

Query: 121 QRRCDKDVRKNLEYLGESRPLLYGFADS 149
           QRRCDKDVRKNLEYLGESRPLLYGFADS
Sbjct: 121 QRRCDKDVRKNLEYLGESRPLLYGFADS 148

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BLAST of Carg25962 vs. NCBI nr
Match: XP_004147056.1 (PREDICTED: auxin-induced protein X10A-like [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 3.6e-61
Identity = 121/149 (81.21%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60
           MS   +KS+KIR IVRLRQMLQHWRKKARAAA  APP DVPA H+AVCVG+GCRRFIVR 
Sbjct: 1   MSPETSKSHKIRRIVRLRQMLQHWRKKARAAACTAPPSDVPAGHIAVCVGTGCRRFIVRT 60

Query: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL 120
           +FLNHPIF KLLSQAEEEYGF TRGPLALPCDESVFEEV+RV+A SEL+NSSR+S+LKDL
Sbjct: 61  TFLNHPIFLKLLSQAEEEYGFETRGPLALPCDESVFEEVLRVVAHSELSNSSRTSNLKDL 120

Query: 121 QRRCDKDVR-KNLEYLGESRPLLYGFADS 149
            RRCD+DVR KNLE+LGESRPLLYGF+D+
Sbjct: 121 TRRCDEDVRSKNLEFLGESRPLLYGFSDN 149

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BLAST of Carg25962 vs. NCBI nr
Match: KGN61862.1 (hypothetical protein Csa_2G257100 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 3.6e-61
Identity = 121/149 (81.21%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60
           MS   +KS+KIR IVRLRQMLQHWRKKARAAA  APP DVPA H+AVCVG+GCRRFIVR 
Sbjct: 70  MSPETSKSHKIRRIVRLRQMLQHWRKKARAAACTAPPSDVPAGHIAVCVGTGCRRFIVRT 129

Query: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL 120
           +FLNHPIF KLLSQAEEEYGF TRGPLALPCDESVFEEV+RV+A SEL+NSSR+S+LKDL
Sbjct: 130 TFLNHPIFLKLLSQAEEEYGFETRGPLALPCDESVFEEVLRVVAHSELSNSSRTSNLKDL 189

Query: 121 QRRCDKDVR-KNLEYLGESRPLLYGFADS 149
            RRCD+DVR KNLE+LGESRPLLYGF+D+
Sbjct: 190 TRRCDEDVRSKNLEFLGESRPLLYGFSDN 218

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BLAST of Carg25962 vs. TAIR10
Match: AT1G19840.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-42
Identity = 88/150 (58.67%), Postives = 113/150 (75.33%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKAR-AAASRAPPPDVPADHVAVCVGSGCRRFIVR 60
           M+  + K +KIR IVRLRQML+ WR KAR ++ SR  P DVP+ HVAVCVGSGCRRF+VR
Sbjct: 1   MAGSLVKCSKIRHIVRLRQMLRRWRNKARLSSVSRCVPSDVPSGHVAVCVGSGCRRFVVR 60

Query: 61  ASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKD 120
           AS+LNHPI   LL QAEEE+GFA +GPL +PC+ESVFEE IR I+RS+ + SSR +   D
Sbjct: 61  ASYLNHPIISNLLVQAEEEFGFANQGPLVIPCEESVFEEAIRFISRSDSSRSSRFTCPDD 120

Query: 121 LQRRCDK--DVRKNLEYLGESRPLLYGFAD 148
           LQ +C+    ++  L+ + ESRPLL+G A+
Sbjct: 121 LQ-KCNGGIKIKSKLDLMIESRPLLHGVAE 149

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BLAST of Carg25962 vs. TAIR10
Match: AT1G75590.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 156.4 bits (394), Expect = 1.4e-38
Identity = 81/150 (54.00%), Postives = 105/150 (70.00%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAA--SRAPPPDVPADHVAVCVGSGCRRFIV 60
           M+  + K +KIR IVRLRQML+ WR +AR ++  SR  P DVP+ HVAV VGS CRRF+V
Sbjct: 1   MAGGLGKCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVV 60

Query: 61  RASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLK 120
           RA++LNHP+ R LL QAEEE+GF  +GPL +PC+ESVFEE IR I+RS+   S R +   
Sbjct: 61  RATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDSTRSRRFTCPD 120

Query: 121 DLQRRCD-KDVRKNLEYLGESRPLLYGFAD 148
           D Q+ C    +R  L+   ESRPLL+G  +
Sbjct: 121 DFQKNCHVVGIRSKLDLWIESRPLLHGVTE 150

[Close]

BLAST of Carg25962 vs. TAIR10
Match: AT5G10990.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 147.1 bits (370), Expect = 8.4e-36
Identity = 78/148 (52.70%), Postives = 103/148 (69.59%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKAR-AAASRAPPPDVPADHVAVCVGSGCRRFIVR 60
           M+  + K +KIR IV+LRQML+ WR KAR ++  R+ P DVP+ HVAV VG  CRRF+V 
Sbjct: 1   MAGGIGKCSKIRHIVKLRQMLRQWRNKARMSSVRRSVPSDVPSGHVAVYVGRSCRRFVVL 60

Query: 61  ASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKD 120
           A++LNHPI   LL +AEEE+GFA +GPL +PC+ESVFEE IR I R     SSR +   D
Sbjct: 61  ATYLNHPILMNLLVKAEEEFGFANQGPLVIPCEESVFEESIRFITR-----SSRFTCTDD 120

Query: 121 LQRRCDKDVRKNLEYLGESRPLLYGFAD 148
           L++     +R  L+ L ESRPLL+G ++
Sbjct: 121 LKKNRHGGIRSKLDLLMESRPLLHGVSE 143

[Close]

BLAST of Carg25962 vs. TAIR10
Match: AT4G34750.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 145.2 bits (365), Expect = 3.2e-35
Identity = 79/149 (53.02%), Postives = 105/149 (70.47%), Query Frame = 0


Query: 5   MAKSNKIRSIVRLRQMLQHWRKKARAAASRAPP-PDVPADHVAVCVGSGCRRFIVRASFL 64
           M K+NKI S+VR+RQML+ W+KKA   +S   P  DVP  HVAV VG   RR++VRA  L
Sbjct: 1   MGKNNKIGSVVRIRQMLKQWQKKAHIGSSNNDPVSDVPPGHVAVSVGENRRRYVVRAKHL 60

Query: 65  NHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSS-----RSSSLK 124
           NHPIFR+LL++AEEEYGFA  GPLA+PCDES+FE++I ++ R E ++SS      +++L+
Sbjct: 61  NHPIFRRLLAEAEEEYGFANVGPLAIPCDESLFEDIIAIVTRCESSSSSGRGNPPAATLE 120

Query: 125 DLQRRCDKDVRKNLEYLGESRPLLYGFAD 148
           DL+R     + KN     ESRPLL G A+
Sbjct: 121 DLRRCSHVGLAKNNV---ESRPLLPGIAE 146

[Close]

BLAST of Carg25962 vs. TAIR10
Match: AT3G43120.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 74.7 bits (182), Expect = 5.3e-14
Identity = 45/145 (31.03%), Postives = 68/145 (46.90%), Query Frame = 0


Query: 6   AKSNKIRSIVRLRQMLQHWR--------------------------------------KK 65
           AK   I+ IVRL+++LQ W+                                       +
Sbjct: 7   AKLTGIKQIVRLKEILQKWQTVTIGSKSDDGELGARKHTAIISPVINKRLLDLKTCDSDE 66

Query: 66  ARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPL 113
                S  PPPDVP  ++AV VG   RRFI+  +FL+H +F+ LL +AEEEYGF   G L
Sbjct: 67  ETTCQSPEPPPDVPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGAL 126

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BLAST of Carg25962 vs. Swiss-Prot
Match: sp|O65695|SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.4e-11
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 0


Query: 3   SVMAKSNKIRSIVRLRQMLQH----WRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIV 62
           ++M K++K+     L+Q+L+      +K          P DVP  H  V VG    R+IV
Sbjct: 2   AIMKKTSKLTQTAMLKQILKRCSSLGKKNGGGYDEDCLPLDVPKGHFPVYVGENRSRYIV 61

Query: 63  RASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVI 104
             SFL HP F+ LL +AEEE+GF     L +PCDE VF+ +  +I
Sbjct: 62  PISFLTHPEFQSLLQRAEEEFGFDHDMGLTIPCDELVFQTLTSMI 106

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BLAST of Carg25962 vs. Swiss-Prot
Match: sp|Q9SA49|SAU41_ARATH (Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-11
Identity = 37/98 (37.76%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 17  LRQMLQHWRKKARAAASRAPPP-----------DVPADHVAVCVGSGCRRFIVRASFLNH 76
           +R+    +R +       APPP            VPA HV V VG    RF+V A  +NH
Sbjct: 20  IRRSTSSFRNRRGHHRLHAPPPPWSICPARRVNTVPAGHVPVYVGEEMERFVVSAELMNH 79

Query: 77  PIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVI 104
           PIF  LL+++ +EYG+A +G L +PC   VFE V+  +
Sbjct: 80  PIFVGLLNRSAQEYGYAQKGVLHIPCHVIVFERVVETL 117

[Close]

BLAST of Carg25962 vs. Swiss-Prot
Match: sp|O64538|SAU40_ARATH (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-10
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 0


Query: 26  KKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRG 85
           K+A  A+S      VP+ HV V VG    RF+V A  LNHP+F  LL+++ +EYG+  +G
Sbjct: 40  KRATVASS------VPSGHVPVNVGEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKG 99

Query: 86  PLALPCDESVFEEVIRVIARSELNNSS 113
            L +PC+  VFE+V+  +     +++S
Sbjct: 100 VLHIPCNVFVFEQVVESLRSGIADDTS 120

[Close]

BLAST of Carg25962 vs. Swiss-Prot
Match: sp|Q9SGU2|SAU71_ARATH (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-10
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 40  VPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEV 99
           VP  HV V VG    RF+V A  LNHP+F  LL Q+ +EYG+  +G L +PC   VFE +
Sbjct: 38  VPEGHVPVYVGHEMERFVVNAELLNHPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERI 97

Query: 100 I 101
           +
Sbjct: 98  L 98

[Close]

BLAST of Carg25962 vs. Swiss-Prot
Match: sp|Q9LTV3|SAU72_ARATH (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.6e-10
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 33  SRAPPPDVPADHVAVCVGSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCD 92
           S+     VP  HV V VG    RF+V A  LNHP+F  LL+++ +EYG+  +G L +PC 
Sbjct: 43  SKKQTSSVPEGHVPVYVGDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCH 102

Query: 93  ESVFEEVI 101
             VFE ++
Sbjct: 103 VLVFERIM 110

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BLAST of Carg25962 vs. TrEMBL
Match: tr|A0A0A0LM48|A0A0A0LM48_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G257100 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.4e-61
Identity = 121/149 (81.21%), Postives = 135/149 (90.60%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60
           MS   +KS+KIR IVRLRQMLQHWRKKARAAA  APP DVPA H+AVCVG+GCRRFIVR 
Sbjct: 70  MSPETSKSHKIRRIVRLRQMLQHWRKKARAAACTAPPSDVPAGHIAVCVGTGCRRFIVRT 129

Query: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL 120
           +FLNHPIF KLLSQAEEEYGF TRGPLALPCDESVFEEV+RV+A SEL+NSSR+S+LKDL
Sbjct: 130 TFLNHPIFLKLLSQAEEEYGFETRGPLALPCDESVFEEVLRVVAHSELSNSSRTSNLKDL 189

Query: 121 QRRCDKDVR-KNLEYLGESRPLLYGFADS 149
            RRCD+DVR KNLE+LGESRPLLYGF+D+
Sbjct: 190 TRRCDEDVRSKNLEFLGESRPLLYGFSDN 218

[Close]

BLAST of Carg25962 vs. TrEMBL
Match: tr|A0A1S3C5H3|A0A1S3C5H3_CUCME (auxin-responsive protein SAUR64 OS=Cucumis melo OX=3656 GN=LOC103497270 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 3.1e-61
Identity = 120/149 (80.54%), Postives = 136/149 (91.28%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60
           MS   +KS+KIR IVRLRQMLQHWRKKAR AASRAPP DVPA H+AVCVG+GCRRFIV  
Sbjct: 51  MSPETSKSHKIRRIVRLRQMLQHWRKKARVAASRAPPSDVPAGHIAVCVGTGCRRFIVPT 110

Query: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL 120
           +FLNHPIFR+LLSQAEEEYGF TRGPLALPCDESVFEEV+RV+ARSEL+N+SR+S+LKDL
Sbjct: 111 TFLNHPIFRQLLSQAEEEYGFETRGPLALPCDESVFEEVLRVVARSELSNTSRTSNLKDL 170

Query: 121 QRRCDKDVR-KNLEYLGESRPLLYGFADS 149
            RRCD+DVR KNLE+LGES PLLYGF+D+
Sbjct: 171 TRRCDEDVRSKNLEFLGESSPLLYGFSDN 199

[Close]

BLAST of Carg25962 vs. TrEMBL
Match: tr|M5VP66|M5VP66_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G082200 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 5.9e-52
Identity = 107/147 (72.79%), Postives = 121/147 (82.31%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60
           MS  ++K NKIR IVR+RQMLQ W KKAR AA+RA P DVPA HVAVCVGS CRRFIVRA
Sbjct: 1   MSPAISKCNKIRRIVRIRQMLQSWHKKARLAAARA-PSDVPAGHVAVCVGSSCRRFIVRA 60

Query: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL 120
           ++LNHPIF+KLL QAEEEYGFA +GPL +PCDES FEEV+RV+ARSE +NS R  S+ DL
Sbjct: 61  TYLNHPIFQKLLVQAEEEYGFANQGPLTIPCDESFFEEVLRVVARSESSNSGRFLSIDDL 120

Query: 121 QRRCDKDVRKNLEYLGESRPLLYGFAD 148
           QRRC  DV   LEYLGESRPLL+G AD
Sbjct: 121 QRRCHVDVLSQLEYLGESRPLLHGLAD 146

[Close]

BLAST of Carg25962 vs. TrEMBL
Match: tr|A0A2R6R6S3|A0A2R6R6S3_ACTCH (Auxin-responsive protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10765 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 3.4e-47
Identity = 100/158 (63.29%), Postives = 123/158 (77.85%), Query Frame = 0


Query: 2   SSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAP------------PPDVPADHVAVCV 61
           ++V+ K NKIR IVR+RQML+ WRKKA A A+ +P            PPDVPA HVA+CV
Sbjct: 4   AAVIEKHNKIRHIVRIRQMLRRWRKKA-AMATESPSSSSGHIPAGRVPPDVPAGHVAICV 63

Query: 62  GSGCRRFIVRASFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELN 121
           GS CRRF+VRA++LNHPIF +LL+QAEEEYGFA RGPLALPCDESVFEE++RV++R+E +
Sbjct: 64  GSECRRFVVRATYLNHPIFTRLLAQAEEEYGFANRGPLALPCDESVFEEILRVVSRAESS 123

Query: 122 NSSRSSSLKDLQRRCDKDVRKNLEYLGESRPLLYGFAD 148
           NSSR  +L+D QR C  D R NL+ LGES PLL GF+D
Sbjct: 124 NSSRFVNLEDFQRCCHVDHRNNLDVLGESGPLLGGFSD 160

[Close]

BLAST of Carg25962 vs. TrEMBL
Match: tr|A0A2C9U178|A0A2C9U178_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G015300 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.9e-46
Identity = 96/147 (65.31%), Postives = 117/147 (79.59%), Query Frame = 0


Query: 1   MSSVMAKSNKIRSIVRLRQMLQHWRKKARAAASRAPPPDVPADHVAVCVGSGCRRFIVRA 60
           MS+ M K +KIR IVRLRQML+ WR KAR +A+R  P DVPA HVAVCVG+ CRRF+VRA
Sbjct: 1   MSAAMGKCSKIRHIVRLRQMLRRWRNKARMSATRI-PSDVPAGHVAVCVGTSCRRFVVRA 60

Query: 61  SFLNHPIFRKLLSQAEEEYGFATRGPLALPCDESVFEEVIRVIARSELNNSSRSSSLKDL 120
           ++LNHP+F+KLL QAEEEYGF  +GPL++PCDE+VFEEVIR I+RSE  NS R  +L+D 
Sbjct: 61  TYLNHPVFKKLLLQAEEEYGFTHQGPLSIPCDETVFEEVIRYISRSESGNSIRFLNLEDF 120

Query: 121 QRRCDKDVRKNLEYLGESRPLLYGFAD 148
           QR C   VR  L++  ESRPLL+GFAD
Sbjct: 121 QRYCHVGVRSKLDFWTESRPLLHGFAD 146

The following BLAST results are available for this feature:

BLAST of Carg25962 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943918.1	3.1e-76	100.00	auxin-responsive protein SAUR50-like [Cucurbita moschata]	[more]
XP_022986631.1	5.2e-76	99.32	auxin-responsive protein SAUR50-like [Cucurbita maxima]	[more]
XP_023512602.1	1.3e-74	97.97	auxin-responsive protein SAUR50-like [Cucurbita pepo subsp. pepo]	[more]
XP_004147056.1	3.6e-61	81.21	PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]	[more]
KGN61862.1	3.6e-61	81.21	hypothetical protein Csa_2G257100 [Cucumis sativus]	[more]

BLAST of Carg25962 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G19840.1	2.1e-42	58.67	SAUR-like auxin-responsive protein family	[more]
AT1G75590.1	1.4e-38	54.00	SAUR-like auxin-responsive protein family	[more]
AT5G10990.1	8.4e-36	52.70	SAUR-like auxin-responsive protein family	[more]
AT4G34750.1	3.2e-35	53.02	SAUR-like auxin-responsive protein family	[more]
AT3G43120.1	5.3e-14	31.03	SAUR-like auxin-responsive protein family	[more]

BLAST of Carg25962 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65695\|SAU50_ARATH	2.4e-11	38.10	Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S...	[more]
sp\|Q9SA49\|SAU41_ARATH	3.1e-11	37.76	Auxin-responsive protein SAUR41 OS=Arabidopsis thaliana OX=3702 GN=SAUR41 PE=2 S...	[more]
sp\|O64538\|SAU40_ARATH	2.0e-10	39.08	Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 S...	[more]
sp\|Q9SGU2\|SAU71_ARATH	3.4e-10	47.54	Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 S...	[more]
sp\|Q9LTV3\|SAU72_ARATH	7.6e-10	42.65	Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 S...	[more]

BLAST of Carg25962 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LM48\|A0A0A0LM48_CUCSA	2.4e-61	81.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G257100 PE=4 SV=1	[more]
tr\|A0A1S3C5H3\|A0A1S3C5H3_CUCME	3.1e-61	80.54	auxin-responsive protein SAUR64 OS=Cucumis melo OX=3656 GN=LOC103497270 PE=4 SV=...	[more]
tr\|M5VP66\|M5VP66_PRUPE	5.9e-52	72.79	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G082200 PE=4 SV=1	[more]
tr\|A0A2R6R6S3\|A0A2R6R6S3_ACTCH	3.4e-47	63.29	Auxin-responsive protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY...	[more]
tr\|A0A2C9U178\|A0A2C9U178_MANES	2.9e-46	65.31	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G015300 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25962-RA	Carg25962-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 16..102 e-value: 1.0E-27 score: 96.0
None	No IPR available	PANTHER	PTHR31374:SF40	F6F9.11 PROTEIN-RELATED	coord: 5..144
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 5..144

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25962	Cla016616	Watermelon (97103) v1	carwmB0427
Carg25962	Csa2G257100	Cucumber (Chinese Long) v2	carcuB0463
Carg25962	ClCG11G003760	Watermelon (Charleston Gray)	carwcgB0422
Carg25962	CSPI02G12840	Wild cucumber (PI 183967)	carcpiB0468
Carg25962	CmaCh02G003560	Cucurbita maxima (Rimu)	carcmaB0600
Carg25962	CmaCh20G008000	Cucurbita maxima (Rimu)	carcmaB0599
Carg25962	CmoCh02G003580	Cucurbita moschata (Rifu)	carcmoB0585
Carg25962	CmoCh20G008080	Cucurbita moschata (Rifu)	carcmoB0584
Carg25962	Lsi10G004270	Bottle gourd (USVL1VR-Ls)	carlsiB390
Carg25962	Cp4.1LG05g12980	Cucurbita pepo (Zucchini)	carcpeB0606
Carg25962	Cp4.1LG16g02710	Cucurbita pepo (Zucchini)	carcpeB0605
Carg25962	CsGy2G012900	Cucumber (Gy14) v2	carcgybB0439
Carg25962	CsaV3_2G015370	Cucumber (Chinese Long) v3	carcucB0463
Carg25962	Cla97C11G210540	Watermelon (97103) v2	carwmbB0454
Carg25962	Bhi10G001540	Wax gourd	carwgoB0518

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg25962	Carg27204	Silver-seed gourd	carcarB443

The following block(s) are covering this gene:

None