Carg25948 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25948
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Squalene synthase
Location	Cucurbita_argyrosperma_scaffold_284 : 34972 .. 41200 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACGGATCCTCCCTTTTTATTTTGTTCTTGGCGAGGATCACAACAAACACTTCGGTCAGAGATTAAAGCAAGAAACAATGAGCCAAAGTTTTCTTTTAAAATTTCCCTCTTAAAAAATTCGGGTCGTCTTCTTCAAGTAGCTGGAGTCCACCCTTGATTCAGTTACCAGTCATTTGGGGTTGAATTAATCGGTTTCTTTGATTGAAGAAGAGGATCTCCATTTGAAGAATCGGGGATTTCTTCTACGGCTTGATCGGCGAGAGATCTGAAGCTCTGTGGATTCTTGGTGCTTTGAAATGGGGAGTTTGGGGGCGATTTTGAGACATCCAGATGACATTTACCCGCTTCTGAAACTGAAAATGGCTGCTAGACATGCGGAGAAGCAGATCCCGCCGGAGTCTCATTGGGGATTCTGCTACACCATGTTGCATAAGGTCTCAAGAAGTTTTGCTCTCGTTATTCAACAGCTTAAGCCCGAGCTTCGGAATGCTGTAAGTTGAAGATCAAGTGTTTCGTATTTGGCGTTTCTTTAGTTGAATGAATCTGTTTCGTTTTCTGGTTGCTGGTTTGATGATGATATTTAGCGTAGAATCTGATGAACTGGGGAAGATCCAATTTATTGCTTAAATATCGCCATCAAAATCCTGTTTGAAAGTTGAAAAAAAGGGATTTAGGATCATAGCAAATCATATCTTATGTTTTAGAATTGATTTAGAACACTGTTATGGTTGAAAATCTGGAAATCATATATCAATTTGTTTAACGAAATTGCTTCCCGTAAAGTTGTGGTGGCTTTTGATTTAGCAGATCACAAAAATATTTGAAACTATTTGTAAAGTGGGTGAACTAAATGAATTTGATTTGTAGTTATCCCTTGAGCAAAATATCCTTGTAACAGTAAAGGTCCAGGTCCACCGCTAGCTATTGTCCTCTTTGGACTTTTTCTTAAAAGTTTTTAAAATTCTTCTGCTAAGGAGAGGTTTCCGCACCCTTACCTCCACAACCAATGTGGGATTTCACAATCCACCCCCTGCGGAGTCCAGCGTCCTCACTCGCACTTATTCCCTTCTCCAATCAATGTAGGTCCCCCCAATCCACCCTCTTTGGGGTCTAGTGTCCTTGCTGGCACACCGCCTCGTGTCCACCCTCCTTTGAGGCTCAGCCTCCTCACTAGTACACCGCCTTGTGTTCACCCCCCTTCGGGGCTCAGCCTCCTCGCTGGCACATCGTCCATTGTCTGACTCTAATACCAAATGTAACCGTTCAAGCCCACCCCTAGCAGATATTGTCCTCTTTGAGCTTTCTCTTCCGGGCTTCCTCTCAAGATTTTTAAATGCGTCTGCTAGGGAGAGGTTTCCACAGCCTTATAAAAAATGTTTCGTTCTCCTTTCCAACTGATGTGAAATCTCACAATCCTTGTCTTACTTTTTAATGAAATTGAAACCATTTATCCATATGTTTATCCATCATAATGTTTCTGATTTTGTCATTTTCGTTTGTTTGTAGGTATGCATATTCTATCTTGTTCTTCGTGCCCTCGACACTGTTGGTATGTAATGAACTCGTACTTCTTTGAGAAGTTTAATGGTTTTTTCTCCTGTAATAATGACTATAATGGCATTTTGGTGGCTTTATATTGCGTTTGACTAACCTTCTTTTTATATATCTCATGTTATCTTAGTCCTACCGAATGAACTTAAGTTCGTTATCCTAAGTTTGTAACCTAGCCCGGCTAAGATGAGAGGTAAGGTCAATTTGACTCGAATCCTGTACCTGATCTTTAATCCTACACCAGTTAATGATGGGGAGAAGTTTCTCTCTTTATCATTTTTTCATCAATGTTGGCCCAGTGCTCGTCCATGCCCAATCCTAATGGACAAACCTTCGATCTGATTTGTCCCTAGCTCTATAATCCAGCCGTCTTCCTTAGTCCCATCAAGCCCTCCTCTCCAAGGCCTTGCCCTCTTTCTCAACTCAAGTCTTTCTCACTTGGGTACTCATAATCTTCATAGTTGGCAATTCAATTGAAGACGATCAATCCCATCTTAATATGTTAATCGAGAAAAACTCGTTATCTTTTTTCTAATTATATAGTTACATATGTATGTACGAAGAACATGTCGAAATTCATGCTGGTTTCTTTTTTATTTGGATTAGCCTAATGGTCCTAAAATTTATTTTATCTTTACAGAGGATGACACAAGCATACAAACAGATATCAAAGTACCAATTCTGAAAGCTTTTCACTGTCAGATATATAACCGTGATTGGCATTTTTCATGTAAGTATTTTACTTGTATTTCTGTGCATATGAGTACGATGTTATAAGAATGATTTTTATTTAAGATCTCTTCTTCTGCTAAAGTATGTTCTTTGTTCTATATTTAGGTGGCACAAAGGACTATAAAGTTCTTATGGATGAGTTTCATCACGTTTCAACTGCGTTCCTAGAACTCGGGAGAGGGTTGGTTATTACTTGGAACCTTGCCTGATGCTTTCTGAAAAAGACAACTAATTATTGATCAAGACCTGTTTCCTTCTATAAGTGTAGTGATAGATTTATTCATTGGATTCTATCCTTTTAATGAACTACAGTGACAATGACTGGTTATGGGTGGGGGTTGTGAGATCCCACCTCGGTTGGGGAGGAGAACGAAGCATTATTTATAAGGGTGTGGAAACCTCTCCCTGACAGATACGTTTTAAAAACCTTGAGGGGAAGCTTAAAAGGGAAAACCTAAAAAGGACAATATCTGCTAACGGTGGGCTTGGGCGATATGCCAGCGAGGACGCTGGGCTCCGAATGGGGTGGATTGTGGGATCCCACATTGGTTGGGGAGGAGAACGAAGCATTCTTTATATGAGTGTGGAAACTTTTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGGTAAGCCCGAAAAGGAAAGCCCAAACGGTGCTCTGATTTTAATTTACTGCATCCTTGCAATTACTTCTGTTATTGTTTTCAAAAGGAACAAGCTTTTATGACTACAAAAAATAGAACTGCAAGAGATTAGATCAACAACTTGTCCAAGTCAAGAGTAACCTTTTCATTTTTGGTATCAAATAAAAAGGCCTCCAATTTGTCAAAGTTTTTAAAATGGAACATCAGAAAAGCTTTTGCATAGAACATCTCTGATTCTGACCAAAAGTTCTTCCGTGCTTAGCTAACTGTGCTGAATTGATTCTGCAGGTACCAGGAAGCAATTGAGGATATCACGAAACGGATGGGCGCAGGAATGGCCAAATTCATTTGCAAAGAGGTACAACAAGTGTCTTGCATTTGCATATTTAGTATATTTGACACAATAATTTTCTTACGTTGTGTAACCGCCCAAGGCCACCACTAGTAGATATTATCTTCTTTAGGTTTTCCTTCCGTTGTTCCCCTCAAGGTTTTTAAAACGCGTTTTCTAGGGAGAGGTTTCCACACCCTTGTAAAGAATGTTTTGTTCTCCTCCCCAACCAATGTGGGATCTCACAATTTACCCCCTCCGGAGCCCAACATCTTCCCTAGCACTCGTTCCCTTCTCTAATCGATGTGGGACCCCCCAATCCATCTCTTTGGGGCCCAGCGTCCTCGCTAGCACTCGTTCCCTTCTCGAATCGATGTGAGACCCCCCAATCCATCCCTTTGGGGCCCAGCGTCCTCGCTGACACTCGTTTCCCTTCTCCAATCGATGTGGGGCCCCCCAATCCATCCCTTCAGGGCCCAGCATGATGGCCCAGCGTCCTCGCTGGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCCCCAATCCATCCCTTTGGAGCCCAGTGTGATGGCCCAGCGTCCTCGCTAGCACTCGTTCCCTTCTCCAATCGATGTGGGACCCCCCAATCCATCCCTTCGGTGCCAGCGTCCTCGCTGGCACTCGTTTCTTTCTCCAATCGATGTGGGACCCCCCAATCCATCCCTTTGGGGCCCAACGTCCTCGCTAGCACTCATTCCCTTCTCCAATTGATGTGAGACCCCCCAATCCATCCCTTCGGGTTTCAGCCTCCTTGCTGGCACACCAGCTCGTGTCCACCTCCCTTCGGGGTTCAACCTCCTCGCTGGCACGTTGCTCAATGTCTGACTTTGATATCATTTGTAACAGTCCAAGCCTATCGCTAGCAAATATTGTCCTATTTGGGCTTTTCCTCAAGGTTTTTAAAATGCGTTTACTAAGGAGAGGTTTCCACACCCTTATAAAGAATACTTCGTTCTCCTCCCCAACCAATGTGGGATCTCACATTTTCTTTTTCCTTCCCACCCAATAGAGTAATATATTAGTAATGGTTAGTAAGGAACGTGGCTAAAGTAATGCATTGATTGGAGAAGAGAACTGAAGCATTTCTTCTCTTCTCGTAGGTAGAGACAGTTGAAGATTATGATGAATATTGTCACTACGTAGCTGGACTTGTCGGACTAGGTTTATCCAAGCTGTTCCACGCTTCGAAGTCAGAGGACTTGGCACCCGATTCTCTTTCAAATTCTATGGGATTGTTTCTTCAGGTCAGCTATTATAATTGAAACGATCATTGTGCTTTCCGAACAATTCATTAATCGGTGTTGAAGTTTGACTCTGATGTACTCTTTTTCGAACTATTATAACACAGAAAACGAATATTATTCGAGATTACTTGGAGGATATCAATGAGATACCAAAGTCTAGGATGTTTTGGCCTCGTGAGATTTGGAGCAAATATGCTGATAAACTAGAGGTGCACAAGTCTACATACCTTCTACCGCCTTTTGGTTTCTTCTTTCGTGTTCTTCGTCGTCTTCTTGTCTTATCGGCTCGTTCTACTCTTTTCTGCATTACAGGATTTTAAATACGAGAAGAATTCAGTCAAGGCCGTGCAATGCCTCAATGATTTGGTCACTAATGCATTGACCCATGTGGAGGATTGCCTAGAATACATGTCTAACTTGAAAGATCTTTCCATATTTCGATTTTGTGCAATCCCTCAGGTATGAAATAAATGTTGCTGTGTTCATCTCTTTCATGTCAAGAACAGTATTTGGACATCTCTTTCATGTTATGATAGATTATGGCAATTGGAACACTAGCATTATGCTACAACAATGTTGACGTCTTCAGAGGGGTCGTCAAAATGCGTCGGGGTACGATTTCCATTGACTGTTTCATTTTGTACAACTCCCAAAAAGGGAGCTAGCCTTCATGGAATCGACCCATAGCTTGAATTTTTATGGTGTCCGTTCTACAGGTCTTACTGCAAAGGTCATTTATCGAACGAAAACGATGGCTGACGTCTATGGAGCTTTCTTTGATTTTTCTGTTATGCTGAAGGCTAAGGTAGAAATCGTCCTGTCAGTCTCGGTGATTGCTCGGTGACTGTATATCGTTTTTCTGCATAAATATCGCATCATCTAACGTTGCTTAATGAAACTAACTTCCTTGGGTTCTACAGGTCAACAGCAGTGATCCTAATGCTTCTAAAACCCTGACCAGGATTGAGGCAATACAGAAAACATGCAAGCAGTCGGGGCTATTGAACAAGAGGTTCGTATTTTTCGTCCTCGGTCGATTTCTTACCTATCTTTCAACCTTAAAATCCTCCGAGCAGTCTGAAACGTTCCATCGTGTTATTGTTCACCAGGGAATTGTATGCAGTACGAAGTGAGCCCATGTGCAATCCAGCTGCGGTGAGTTTCTATTACTCGATCACATAAAAAACGATATCGTTGTAGTGTAAGAATATCTGATGATGTTTTTGTTGTTTCGATCTAGATTGTCGTACTTTTCAGCCTATTATGCATCATTCTCGCTTATCTCTCCGCTAAACGATTACCAGCTAACCAACCAGTATGAACGTCAAAGTCCGGTAAGATCGATAAATCAAACACAAGAATGTATGTCGTCGTTTATGTTCTTAGTTCGGTTTCCTCGAATGCAGGGTACGAGTTTCAACAGAACGCACCGTGAACATGGGCAGTAAGTTTCAGTTTGTAGCTCAATTATTGTCTGAGTTTTGTTTGAATATTACAATGGCTGTAAGTTAGTGTTTGTTTAGTACAGAGCATGAAACAAGTGAAATTCTGTAACCTTCTAATTCTTCTTTTTCAATCTTCTAATAAGAGATTACGTCTTGGAATTATAATTTCTTCACAAATGGTGTTTCAGTACCCTGTGGATTGTTTATTTGTGTTTTTTTTTTTTTTTCCCAGAAAAAAAATT

mRNA sequence

GAACGGATCCTCCCTTTTTATTTTGTTCTTGGCGAGGATCACAACAAACACTTCGGTCAGAGATTAAAGCAAGAAACAATGAGCCAAAGTTTTCTTTTAAAATTTCCCTCTTAAAAAATTCGGGTCGTCTTCTTCAAGTAGCTGGAGTCCACCCTTGATTCAGTTACCAGTCATTTGGGGTTGAATTAATCGGTTTCTTTGATTGAAGAAGAGGATCTCCATTTGAAGAATCGGGGATTTCTTCTACGGCTTGATCGGCGAGAGATCTGAAGCTCTGTGGATTCTTGGTGCTTTGAAATGGGGAGTTTGGGGGCGATTTTGAGACATCCAGATGACATTTACCCGCTTCTGAAACTGAAAATGGCTGCTAGACATGCGGAGAAGCAGATCCCGCCGGAGTCTCATTGGGGATTCTGCTACACCATGTTGCATAAGGTCTCAAGAAGTTTTGCTCTCGTTATTCAACAGCTTAAGCCCGAGCTTCGGAATGCTGTATGCATATTCTATCTTGTTCTTCGTGCCCTCGACACTGTTGGTATGTAATGAACTCGTACTTCTTTGAGAAGTTTAATGGTTTTTTCTCCTGTAATAATGACTATAATGGCATTTTGGTGGCTTTATATTGCGTTTGACTAACCTTCTTTTTATATATCTCATGTTATCTTAGTCCTACCGAATGAACTTAAGTTCGTTATCCTAAGTTTGTAACCTAGCCCGGCTAAGATGAGAGGTAAGGTCAATTTGACTCGAATCCTGTACCTGATCTTTAATCCTACACCAGTTAATGATGGGGAGAAGTTTCTCTCTTTATCATTTTTTCATCAATGTTGGCCCAGTGCTCGTCCATGCCCAATCCTAATGGACAAACCTTCGATCTGATTTGTCCCTAGCTCTATAATCCAGCCGTCTTCCTTAGTCCCATCAAGCCCTCCTCTCCAAGGCCTTGCCCTCTTTCTCAACTCAAGTCTTTCTCACTTGGGTACTCATAATCTTCATAGTTGGCAATTCAATTGAAGACGATCAATCCCATCTTAATATGTTAATCGAGAAAAACTCGTTATCTTTTTTCTAATTATATAGTTACATATGTATGTACGAAGAACATGTCGAAATTCATGCTGGTTTCTTTTTTATTTGGATTAGCCTAATGGTCCTAAAATTTATTTTATCTTTACAGAGGATGACACAAGCATACAAACAGATATCAAAGTACCAATTCTGAAAGCTTTTCACTGTCAGATATATAACCGTGATTGGCATTTTTCATGTGGCACAAAGGACTATAAAGTTCTTATGGATGAGTTTCATCACGTTTCAACTGCGTTCCTAGAACTCGGGAGAGGGTACCAGGAAGCAATTGAGGATATCACGAAACGGATGGGCGCAGGAATGGCCAAATTCATTTGCAAAGAGGTAGAGACAGTTGAAGATTATGATGAATATTGTCACTACGTAGCTGGACTTGTCGGACTAGGTTTATCCAAGCTGTTCCACGCTTCGAAGTCAGAGGACTTGGCACCCGATTCTCTTTCAAATTCTATGGGATTGTTTCTTCAGAAAACGAATATTATTCGAGATTACTTGGAGGATATCAATGAGATACCAAAGTCTAGGATGTTTTGGCCTCGTGAGATTTGGAGCAAATATGCTGATAAACTAGAGGATTTTAAATACGAGAAGAATTCAGTCAAGGCCGTGCAATGCCTCAATGATTTGGTCACTAATGCATTGACCCATGTGGAGGATTGCCTAGAATACATGTCTAACTTGAAAGATCTTTCCATATTTCGATTTTGTGCAATCCCTCAGATTATGGCAATTGGAACACTAGCATTATGCTACAACAATGTTGACGTCTTCAGAGGGGTCGTCAAAATGCGTCGGGGTCTTACTGCAAAGGTCATTTATCGAACGAAAACGATGGCTGACGTCTATGGAGCTTTCTTTGATTTTTCTGTTATGCTGAAGGCTAAGGTCAACAGCAGTGATCCTAATGCTTCTAAAACCCTGACCAGGATTGAGGCAATACAGAAAACATGCAAGCAGTCGGGGCTATTGAACAAGAGGTTCGTATTTTTCGTCCTCGGGAATTGTATGCAGTACGAAGTGAGCCCATGTGCAATCCAGCTGCGATTGTCGTACTTTTCAGCCTATTATGCATCATTCTCGCTTATCTCTCCGCTAAACGATTACCAGCTAACCAACCAGTATGAACGTCAAAGTCCGGGTACGAGTTTCAACAGAACGCACCGTGAACATGGGCAGTAAGTTTCAGTTTGTAGCTCAATTATTGTCTGAGTTTTGTTTGAATATTACAATGGCTGTAAGTTAGTGTTTGTTTAGTACAGAGCATGAAACAAGTGAAATTCTGTAACCTTCTAATTCTTCTTTTTCAATCTTCTAATAAGAGATTACGTCTTGGAATTATAATTTCTTCACAAATGGTGTTTCAGTACCCTGTGGATTGTTTATTTGTGTTTTTTTTTTTTTTTCCCAGAAAAAAAATT

Coding sequence (CDS)

ATGGATGAGTTTCATCACGTTTCAACTGCGTTCCTAGAACTCGGGAGAGGGTACCAGGAAGCAATTGAGGATATCACGAAACGGATGGGCGCAGGAATGGCCAAATTCATTTGCAAAGAGGTAGAGACAGTTGAAGATTATGATGAATATTGTCACTACGTAGCTGGACTTGTCGGACTAGGTTTATCCAAGCTGTTCCACGCTTCGAAGTCAGAGGACTTGGCACCCGATTCTCTTTCAAATTCTATGGGATTGTTTCTTCAGAAAACGAATATTATTCGAGATTACTTGGAGGATATCAATGAGATACCAAAGTCTAGGATGTTTTGGCCTCGTGAGATTTGGAGCAAATATGCTGATAAACTAGAGGATTTTAAATACGAGAAGAATTCAGTCAAGGCCGTGCAATGCCTCAATGATTTGGTCACTAATGCATTGACCCATGTGGAGGATTGCCTAGAATACATGTCTAACTTGAAAGATCTTTCCATATTTCGATTTTGTGCAATCCCTCAGATTATGGCAATTGGAACACTAGCATTATGCTACAACAATGTTGACGTCTTCAGAGGGGTCGTCAAAATGCGTCGGGGTCTTACTGCAAAGGTCATTTATCGAACGAAAACGATGGCTGACGTCTATGGAGCTTTCTTTGATTTTTCTGTTATGCTGAAGGCTAAGGTCAACAGCAGTGATCCTAATGCTTCTAAAACCCTGACCAGGATTGAGGCAATACAGAAAACATGCAAGCAGTCGGGGCTATTGAACAAGAGGTTCGTATTTTTCGTCCTCGGGAATTGTATGCAGTACGAAGTGAGCCCATGTGCAATCCAGCTGCGATTGTCGTACTTTTCAGCCTATTATGCATCATTCTCGCTTATCTCTCCGCTAAACGATTACCAGCTAACCAACCAGTATGAACGTCAAAGTCCGGGTACGAGTTTCAACAGAACGCACCGTGAACATGGGCAGTAA

Protein sequence

MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGLGLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLALCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLTRIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFSLISPLNDYQLTNQYERQSPGTSFNRTHREHGQ

Homology

[Close]

BLAST of Carg25948 vs. NCBI nr
Match: XP_022943420.1 (squalene synthase-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 526.6 bits (1355), Expect = 6.2e-146
Identity = 263/282 (93.26%), Postives = 267/282 (94.68%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSE+LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSENLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS 283
           RIEAIQKTCKQSGLLNKR ++ V    M    +P     RLS
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPMCNPAAPIMHHSRLS 400

[Close]

BLAST of Carg25948 vs. NCBI nr
Match: XP_022943419.1 (squalene synthase-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 523.5 bits (1347), Expect = 5.2e-145
Identity = 265/292 (90.75%), Postives = 270/292 (92.47%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSE+LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSENLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS 293
           RIEAIQKTCKQSGLLNKR ++ V    M    +P AI +  S      A  S
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPM---CNPAAIVVLFSLLCIILAYLS 407

[Close]

BLAST of Carg25948 vs. NCBI nr
Match: XP_022986545.1 (squalene synthase-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 520.4 bits (1339), Expect = 4.4e-144
Identity = 260/282 (92.20%), Postives = 266/282 (94.33%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYE+NSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEENSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVML+AKVNSS PNASKTL+
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLEAKVNSSYPNASKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS 283
           RIEAIQKTCKQSGLLNKR ++ V    M    +P     RLS
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPMCNPAAPIMHHSRLS 400

[Close]

BLAST of Carg25948 vs. NCBI nr
Match: XP_023511855.1 (squalene synthase-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 519.6 bits (1337), Expect = 7.5e-144
Identity = 259/282 (91.84%), Postives = 266/282 (94.33%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYE+NSVKAVQCLNDLVTNAL HVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEENSVKAVQCLNDLVTNALIHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNV+VFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTL+
Sbjct: 299 LCYNNVEVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLS 283
           RIEAIQKTCKQSGLLNKR ++ V    M    +P     R+S
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPMCNLAAPIMHHSRVS 400

[Close]

BLAST of Carg25948 vs. NCBI nr
Match: XP_022986544.1 (squalene synthase-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 518.5 bits (1334), Expect = 1.7e-143
Identity = 263/292 (90.07%), Postives = 269/292 (92.12%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYE+NSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEENSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVML+AKVNSS PNASKTL+
Sbjct: 299 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLEAKVNSSYPNASKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS 293
           RIEAIQKTCKQSGLLNKR ++ V    M    +P AI L  S      A  S
Sbjct: 359 RIEAIQKTCKQSGLLNKRELYAVRSEPM---CNPAAIVLLFSLLCIILAYLS 407

[Close]

BLAST of Carg25948 vs. TAIR10
Match: AT4G34640.1 (squalene synthase 1)

HSP 1 Score: 432.6 bits (1111), Expect = 2.2e-121
Identity = 208/260 (80.00%), Postives = 235/260 (90.38%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MD+FHHVS AFLEL +GYQEAIE+IT+RMGAGMAKFIC+EVETV+DYDEYCHYVAGLVGL
Sbjct: 119 MDQFHHVSAAFLELEKGYQEAIEEITRRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPD--SLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKY 120
           GLSKLF A+ SE L PD  ++SNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIW KY
Sbjct: 179 GLSKLFLAAGSEVLTPDWEAISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKY 238

Query: 121 ADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGT 180
           ADKLED KYE+N+ K+VQCLN++VTNAL H+EDCL+YM +L+D SIFRFCAIPQIMAIGT
Sbjct: 239 ADKLEDLKYEENTNKSVQCLNEMVTNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGT 298

Query: 181 LALCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKT 240
           LALCYNN  VFRGVVK+RRGLTAKVI RTKTMADVYGAF+DFS MLK KV+ +DPNASKT
Sbjct: 299 LALCYNNEQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKT 358

Query: 241 LTRIEAIQKTCKQSGLLNKR 259
           L R+EA+QK C+ +G+L  R
Sbjct: 359 LNRLEAVQKLCRDAGVLQNR 378

[Close]

BLAST of Carg25948 vs. TAIR10
Match: AT4G34650.1 (squalene synthase 2)

HSP 1 Score: 406.0 bits (1042), Expect = 2.2e-113
Identity = 195/260 (75.00%), Postives = 228/260 (87.69%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MD+FHHVS AFL+L +GYQEAIEDITKRMGAGMAKFICKEVET++DYDEYCHY AGLVGL
Sbjct: 119 MDQFHHVSAAFLKLEKGYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYAAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPD--SLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKY 120
           GLSK+F AS+ E L PD   +SNS GLFLQKTNII+DYLEDINE PKSRMFWPREIW KY
Sbjct: 179 GLSKIFIASELEILTPDWKQISNSTGLFLQKTNIIKDYLEDINERPKSRMFWPREIWGKY 238

Query: 121 ADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGT 180
            DKLEDFK E+ + KAVQCLN++VTNAL HVEDCL+ +++L+D +IF+ CAIPQI+AIGT
Sbjct: 239 VDKLEDFKNEEKATKAVQCLNEMVTNALNHVEDCLKSLASLRDPAIFQSCAIPQIVAIGT 298

Query: 181 LALCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKT 240
           LALCYNNV VFRGVV++RRGL AKVI RTKTM DVYGAF+DFS ML+ KV+++DPNA KT
Sbjct: 299 LALCYNNVQVFRGVVRLRRGLIAKVIDRTKTMDDVYGAFYDFSCMLQTKVDNNDPNAMKT 358

Query: 241 LTRIEAIQKTCKQSGLLNKR 259
           L R+E I+K CK++G L+KR
Sbjct: 359 LNRLETIKKFCKENGGLHKR 378

[Close]

BLAST of Carg25948 vs. Swiss-Prot
Match: sp|P53800|FDFT_NICBE (Squalene synthase OS=Nicotiana benthamiana OX=4100 PE=2 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 1.6e-124
Identity = 213/263 (80.99%), Postives = 238/263 (90.49%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MD+FHHVSTAFLEL + YQ+AIEDIT RMGAGMAKFICKEVET +DYDEYCHYVAGLVGL
Sbjct: 119 MDQFHHVSTAFLELRKHYQQAIEDITMRMGAGMAKFICKEVETTDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHAS+ EDLA DSLSNSMGLFLQKTNIIRDYLEDINE+PK RMFWPREIWSKY +
Sbjct: 179 GLSKLFHASEKEDLASDSLSNSMGLFLQKTNIIRDYLEDINEVPKCRMFWPREIWSKYVN 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLE+ KYE NS KAVQCLND+VTNAL HVEDCL YMS L+D SIFRFCAIPQ+MAIGTLA
Sbjct: 239 KLEELKYEDNSAKAVQCLNDMVTNALPHVEDCLTYMSALRDPSIFRFCAIPQVMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           +CY+N++VFRGVVKMRRGLTAKVI RT+T+ADVYGAFFDFS MLK+KVN++DPNA+KTL 
Sbjct: 299 MCYDNIEVFRGVVKMRRGLTAKVIDRTRTIADVYGAFFDFSCMLKSKVNNNDPNATKTLK 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFV 264
           R+E I KTC+ SG LNKR  + +
Sbjct: 359 RLEVILKTCRDSGTLNKRKSYII 381

[Close]

BLAST of Carg25948 vs. Swiss-Prot
Match: sp|P53799|FDFT1_ARATH (Squalene synthase 1 OS=Arabidopsis thaliana OX=3702 GN=SQS1 PE=1 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 4.0e-120
Identity = 208/260 (80.00%), Postives = 235/260 (90.38%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MD+FHHVS AFLEL +GYQEAIE+IT+RMGAGMAKFIC+EVETV+DYDEYCHYVAGLVGL
Sbjct: 119 MDQFHHVSAAFLELEKGYQEAIEEITRRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPD--SLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKY 120
           GLSKLF A+ SE L PD  ++SNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIW KY
Sbjct: 179 GLSKLFLAAGSEVLTPDWEAISNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKY 238

Query: 121 ADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGT 180
           ADKLED KYE+N+ K+VQCLN++VTNAL H+EDCL+YM +L+D SIFRFCAIPQIMAIGT
Sbjct: 239 ADKLEDLKYEENTNKSVQCLNEMVTNALMHIEDCLKYMVSLRDPSIFRFCAIPQIMAIGT 298

Query: 181 LALCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKT 240
           LALCYNN  VFRGVVK+RRGLTAKVI RTKTMADVYGAF+DFS MLK KV+ +DPNASKT
Sbjct: 299 LALCYNNEQVFRGVVKLRRGLTAKVIDRTKTMADVYGAFYDFSCMLKTKVDKNDPNASKT 358

Query: 241 LTRIEAIQKTCKQSGLLNKR 259
           L R+EA+QK C+ +G+L  R
Sbjct: 359 LNRLEAVQKLCRDAGVLQNR 378

[Close]

BLAST of Carg25948 vs. Swiss-Prot
Match: sp|O65688|FDFT2_ARATH (Inactive squalene synthase 2 OS=Arabidopsis thaliana OX=3702 GN=SQS2 PE=1 SV=2)

HSP 1 Score: 406.0 bits (1042), Expect = 4.0e-112
Identity = 195/260 (75.00%), Postives = 228/260 (87.69%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MD+FHHVS AFL+L +GYQEAIEDITKRMGAGMAKFICKEVET++DYDEYCHY AGLVGL
Sbjct: 119 MDQFHHVSAAFLKLEKGYQEAIEDITKRMGAGMAKFICKEVETIDDYDEYCHYAAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPD--SLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKY 120
           GLSK+F AS+ E L PD   +SNS GLFLQKTNII+DYLEDINE PKSRMFWPREIW KY
Sbjct: 179 GLSKIFIASELEILTPDWKQISNSTGLFLQKTNIIKDYLEDINERPKSRMFWPREIWGKY 238

Query: 121 ADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGT 180
            DKLEDFK E+ + KAVQCLN++VTNAL HVEDCL+ +++L+D +IF+ CAIPQI+AIGT
Sbjct: 239 VDKLEDFKNEEKATKAVQCLNEMVTNALNHVEDCLKSLASLRDPAIFQSCAIPQIVAIGT 298

Query: 181 LALCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKT 240
           LALCYNNV VFRGVV++RRGL AKVI RTKTM DVYGAF+DFS ML+ KV+++DPNA KT
Sbjct: 299 LALCYNNVQVFRGVVRLRRGLIAKVIDRTKTMDDVYGAFYDFSCMLQTKVDNNDPNAMKT 358

Query: 241 LTRIEAIQKTCKQSGLLNKR 259
           L R+E I+K CK++G L+KR
Sbjct: 359 LNRLETIKKFCKENGGLHKR 378

[Close]

BLAST of Carg25948 vs. Swiss-Prot
Match: sp|Q9SDW9|BSS_BOTBR (Squalene synthase OS=Botryococcus braunii OX=38881 GN=BSS PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 3.4e-71
Identity = 142/260 (54.62%), Postives = 179/260 (68.85%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEV-ETVEDYDEYCHYVAGLVG 60
           +D++  V++ FL+L    QE I DITKRMG GMA F+ K V +TV DYD YCHYVAG+VG
Sbjct: 122 LDQYPKVTSVFLKLTPREQEIIADITKRMGNGMADFVHKGVPDTVGDYDLYCHYVAGVVG 181

Query: 61  LGLSKLFHAS--KSEDLA-PDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWS 120
           LGLS+LF AS  +S  L   + LSN MGLFLQKTNIIRDY EDINE+P  RMFWPREIW 
Sbjct: 182 LGLSQLFVASGLQSPSLTRSEDLSNHMGLFLQKTNIIRDYFEDINELPAPRMFWPREIWG 241

Query: 121 KYADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAI 180
           KYA+ L +FK   N   A+ CLN++VT+AL H   CL+YMS ++D  IF FCAIPQ MA 
Sbjct: 242 KYANNLAEFKDPANKAAAMCCLNEMVTDALRHAVYCLQYMSMIEDPQIFNFCAIPQTMAF 301

Query: 181 GTLALCYNNVDVFRG---VVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVN---S 240
           GTL+LCYNN  +F G    VK+RRG TAK++Y +  M  +Y  F +F+  L+ + N   S
Sbjct: 302 GTLSLCYNNYTIFTGPKAAVKLRRGTTAKLMYTSNNMFAMYRHFLNFAEKLEVRCNTETS 361

Query: 241 SDPNASKTLTRIEAIQKTCK 251
            DP+ + TL  +  I+  CK
Sbjct: 362 EDPSVTTTLEHLHKIKAACK 381

[Close]

BLAST of Carg25948 vs. Swiss-Prot
Match: sp|Q54DR1|FDFT_DICDI (Squalene synthase OS=Dictyostelium discoideum OX=44689 GN=fdfT PE=3 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 8.4e-70
Identity = 133/254 (52.36%), Postives = 175/254 (68.90%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           ++ F  V   FL LG GY   I DIT+RM  GM++F+ K V T+ ++D YCHYVAGLVG+
Sbjct: 122 VENFDKVVDVFLGLGDGYCTIIHDITRRMANGMSEFLQKSVVTLPEWDLYCHYVAGLVGI 181

Query: 61  GLSKLFHASKSED---LAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSK 120
           GLSK+FHAS  E       D  SN MGLFLQKTNIIRDYLEDINE    R+FWPR++W++
Sbjct: 182 GLSKIFHASGLESEWFATADDESNQMGLFLQKTNIIRDYLEDINE---KRIFWPRDVWAR 241

Query: 121 YADKLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIG 180
           Y   LE+FK  K  + A+ CLNDL+TNAL+H    L+YMS LK+  +  FCAIPQ+MAIG
Sbjct: 242 YTLHLENFKEAKYQIPALHCLNDLITNALSHALIALDYMSRLKNPQVINFCAIPQVMAIG 301

Query: 181 TLALCYNNVDVFRGVVKMRRGLTAKVI--YRTKTMADVYGAFFDFSVMLKAKVNSSDPNA 240
           TL  CYNN +VF GVVK+R+G  A ++   ++K +   Y  FF F+  ++ KV  +DP+A
Sbjct: 302 TLNACYNNYNVFTGVVKIRKGQRALIVDAIQSKGLTATYELFFKFANEMRHKVPPNDPSA 361

Query: 241 SKTLTRIEAIQKTC 250
            KT+  +E+I+K C
Sbjct: 362 KKTIQHLESIEKLC 372

[Close]

BLAST of Carg25948 vs. TrEMBL
Match: tr|A0A2R2WEW6|A0A2R2WEW6_LUFAC (Squalene synthase OS=Luffa acutangula OX=56866 PE=2 SV=1)

HSP 1 Score: 507.3 bits (1305), Expect = 2.6e-140
Identity = 249/263 (94.68%), Postives = 257/263 (97.72%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELG+GYQEAIEDITKRMGAGMAKFICKEVETV+DYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGKGYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASK EDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKLEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYEKNSVKAVQCLNDLVTNAL HVEDCL+YMSNL+DLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEKNSVKAVQCLNDLVTNALNHVEDCLKYMSNLRDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNV VFRGVVKMRRGLTAKVI RTKTMADVYGAFFDFSVMLKAKVN+SDPNASKTL+
Sbjct: 299 LCYNNVQVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFSVMLKAKVNNSDPNASKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFV 264
           RIEAIQKTCKQSGLLNKR ++ V
Sbjct: 359 RIEAIQKTCKQSGLLNKRKLYVV 381

[Close]

BLAST of Carg25948 vs. TrEMBL
Match: tr|A0A2R2WEW2|A0A2R2WEW2_BENHI (Squalene synthase OS=Benincasa hispida var. chieh-qua OX=1208597 PE=2 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 1.4e-138
Identity = 244/263 (92.78%), Postives = 257/263 (97.72%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELG+GYQEAIEDITKRMGAGMAKFIC+EVETV+DYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGKGYQEAIEDITKRMGAGMAKFICQEVETVDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHA+K EDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIW KYAD
Sbjct: 179 GLSKLFHAAKLEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYE+NSVKAVQCLNDLVTNAL HVEDCL+YMSNL+DLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEENSVKAVQCLNDLVTNALNHVEDCLKYMSNLRDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNN++VFRGVVKMRRGLTAKVI RTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTL+
Sbjct: 299 LCYNNIEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFV 264
           RIEAIQ+TCKQSGLLNKR ++ V
Sbjct: 359 RIEAIQQTCKQSGLLNKRKLYVV 381

[Close]

BLAST of Carg25948 vs. TrEMBL
Match: tr|A0A0A0LIW1|A0A0A0LIW1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G251460 PE=4 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 3.1e-138
Identity = 243/263 (92.40%), Postives = 257/263 (97.72%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELG+GYQEAIEDITKRMGAGMAKFICKEVETV+DYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGKGYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHA++ EDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIW KYAD
Sbjct: 179 GLSKLFHAAELEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWGKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYE+NSVKAVQCLNDLVTNAL HVEDCL+YMSNL+DLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEENSVKAVQCLNDLVTNALNHVEDCLKYMSNLRDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNV+VFRGVVKMRRGLTAKVI RTKTMADVYGAFFDFSVMLKAKVNS+DPNASKTL+
Sbjct: 299 LCYNNVEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFFDFSVMLKAKVNSNDPNASKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFV 264
           RIEAIQKTCKQSG+LN+R ++ V
Sbjct: 359 RIEAIQKTCKQSGILNRRKLYVV 381

[Close]

BLAST of Carg25948 vs. TrEMBL
Match: tr|A0A2R2WEV3|A0A2R2WEV3_9ROSI (Squalene synthase OS=Trichosanthes pubera subsp. rubriflos OX=459633 PE=2 SV=1)

HSP 1 Score: 499.6 bits (1285), Expect = 5.3e-138
Identity = 249/292 (85.27%), Postives = 266/292 (91.10%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELG+GYQEAIEDITKRMGAGMAKFICKEVETV+DYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGKGYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASK EDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD
Sbjct: 179 GLSKLFHASKLEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYE+NSVKAVQCLND VTNAL HVEDCL+YMSNL+DLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEENSVKAVQCLNDSVTNALNHVEDCLKYMSNLRDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNV+VFRGVVKMRRGLTAK+I RTKT+ADVYG+FFDFSVMLKAKVNS+DPNA+KTL+
Sbjct: 299 LCYNNVEVFRGVVKMRRGLTAKIIDRTKTIADVYGSFFDFSVMLKAKVNSNDPNAAKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFVLGNCMQYEVSPCAIQLRLSYFSAYYASFS 293
           RIEAIQKTCK+SGLLNKR ++ V    M    +P AI +  S      A  S
Sbjct: 359 RIEAIQKTCKESGLLNKRKLYVVRSEPM---YNPAAIVILFSLICIILAYLS 407

[Close]

BLAST of Carg25948 vs. TrEMBL
Match: tr|A0A2R2WEZ7|A0A2R2WEZ7_9ROSI (Squalene synthase OS=Trichosanthes truncata OX=685060 PE=2 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 7.0e-138
Identity = 242/263 (92.02%), Postives = 255/263 (96.96%), Query Frame = 0


Query: 1   MDEFHHVSTAFLELGRGYQEAIEDITKRMGAGMAKFICKEVETVEDYDEYCHYVAGLVGL 60
           MDEFHHVSTAFLELG+GYQEAIEDITKRMGAGMAKFICKEVETV+DYDEYCHYVAGLVGL
Sbjct: 119 MDEFHHVSTAFLELGKGYQEAIEDITKRMGAGMAKFICKEVETVDDYDEYCHYVAGLVGL 178

Query: 61  GLSKLFHASKSEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYAD 120
           GLSKLFHASK EDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKY D
Sbjct: 179 GLSKLFHASKLEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPREIWSKYVD 238

Query: 121 KLEDFKYEKNSVKAVQCLNDLVTNALTHVEDCLEYMSNLKDLSIFRFCAIPQIMAIGTLA 180
           KLEDFKYE+NS KAVQCLNDLVTNAL HVEDCL+YMSNL+DLSIFRFCAIPQIMAIGTLA
Sbjct: 239 KLEDFKYEENSAKAVQCLNDLVTNALNHVEDCLKYMSNLRDLSIFRFCAIPQIMAIGTLA 298

Query: 181 LCYNNVDVFRGVVKMRRGLTAKVIYRTKTMADVYGAFFDFSVMLKAKVNSSDPNASKTLT 240
           LCYNNV+VFRGVVKMRRGLTAK+I RTKT+ADVYGAFFDFSVMLKAKVN SDPNA+KTL+
Sbjct: 299 LCYNNVEVFRGVVKMRRGLTAKIIDRTKTIADVYGAFFDFSVMLKAKVNGSDPNAAKTLS 358

Query: 241 RIEAIQKTCKQSGLLNKRFVFFV 264
           RIEAIQKTCK+SGLLNKR ++ V
Sbjct: 359 RIEAIQKTCKESGLLNKRTLYVV 381

The following BLAST results are available for this feature:

BLAST of Carg25948 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022943420.1	6.2e-146	93.26	squalene synthase-like isoform X2 [Cucurbita moschata]	[more]
XP_022943419.1	5.2e-145	90.75	squalene synthase-like isoform X1 [Cucurbita moschata]	[more]
XP_022986545.1	4.4e-144	92.20	squalene synthase-like isoform X2 [Cucurbita maxima]	[more]
XP_023511855.1	7.5e-144	91.84	squalene synthase-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022986544.1	1.7e-143	90.07	squalene synthase-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg25948 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34640.1	2.2e-121	80.00	squalene synthase 1	[more]
AT4G34650.1	2.2e-113	75.00	squalene synthase 2	[more]

BLAST of Carg25948 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P53800\|FDFT_NICBE	1.6e-124	80.99	Squalene synthase OS=Nicotiana benthamiana OX=4100 PE=2 SV=1	[more]
sp\|P53799\|FDFT1_ARATH	4.0e-120	80.00	Squalene synthase 1 OS=Arabidopsis thaliana OX=3702 GN=SQS1 PE=1 SV=1	[more]
sp\|O65688\|FDFT2_ARATH	4.0e-112	75.00	Inactive squalene synthase 2 OS=Arabidopsis thaliana OX=3702 GN=SQS2 PE=1 SV=2	[more]
sp\|Q9SDW9\|BSS_BOTBR	3.4e-71	54.62	Squalene synthase OS=Botryococcus braunii OX=38881 GN=BSS PE=1 SV=1	[more]
sp\|Q54DR1\|FDFT_DICDI	8.4e-70	52.36	Squalene synthase OS=Dictyostelium discoideum OX=44689 GN=fdfT PE=3 SV=1	[more]

BLAST of Carg25948 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2R2WEW6\|A0A2R2WEW6_LUFAC	2.6e-140	94.68	Squalene synthase OS=Luffa acutangula OX=56866 PE=2 SV=1	[more]
tr\|A0A2R2WEW2\|A0A2R2WEW2_BENHI	1.4e-138	92.78	Squalene synthase OS=Benincasa hispida var. chieh-qua OX=1208597 PE=2 SV=1	[more]
tr\|A0A0A0LIW1\|A0A0A0LIW1_CUCSA	3.1e-138	92.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G251460 PE=4 SV=1	[more]
tr\|A0A2R2WEV3\|A0A2R2WEV3_9ROSI	5.3e-138	85.27	Squalene synthase OS=Trichosanthes pubera subsp. rubriflos OX=459633 PE=2 SV=1	[more]
tr\|A0A2R2WEZ7\|A0A2R2WEZ7_9ROSI	7.0e-138	92.02	Squalene synthase OS=Trichosanthes truncata OX=685060 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006696	ergosterol biosynthetic process
GO:0009058	biosynthetic process
GO:0008610	lipid biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0004310	farnesyl-diphosphate farnesyltransferase activity
GO:0051996	squalene synthase activity
GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0016740	transferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR033904	Trans_IPPS_HH
IPR019845	Squalene/phytoene_synthase_CS
IPR008949	Isoprenoid_synthase_dom_sf
IPR002060	Squ/phyt_synthse
IPR006449	Squal_synth-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008610	lipid biosynthetic process
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0006696	ergosterol biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups
molecular_function	GO:0004310	farnesyl-diphosphate farnesyltransferase activity
molecular_function	GO:0051996	squalene synthase activity
molecular_function	GO:0016740	transferase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25948-RA	Carg25948-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006449	Squalene synthase-like	TIGRFAM	TIGR01559	TIGR01559	coord: 1..249 e-value: 1.9E-117 score: 390.2
IPR002060	Squalene/phytoene synthase	PFAM	PF00494	SQS_PSY	coord: 3..197 e-value: 9.4E-31 score: 107.2
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	G3DSA:1.10.600.10		coord: 1..249 e-value: 3.4E-95 score: 320.9
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	SSF48576	Terpenoid synthases	coord: 2..249
None	No IPR available	PANTHER	PTHR11626	FARNESYL-DIPHOSPHATE FARNESYLTRANSFERASE	coord: 1..259
IPR019845	Squalene/phytoene synthase, conserved site	PROSITE	PS01044	SQUALEN_PHYTOEN_SYN_1	coord: 50..65
IPR019845	Squalene/phytoene synthase, conserved site	PROSITE	PS01045	SQUALEN_PHYTOEN_SYN_2	coord: 83..111
IPR033904	Trans-Isoprenyl Diphosphate Synthases, head-to-head	CDD	cd00683	Trans_IPPS_HH	coord: 1..202 e-value: 3.87633E-63 score: 202.465

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25948	Cla016602	Watermelon (97103) v1	carwmB0427
Carg25948	Csa2G251460	Cucumber (Chinese Long) v2	carcuB0463
Carg25948	MELO3C023346	Melon (DHL92) v3.5.1	carmeB0438
Carg25948	ClCG11G003970	Watermelon (Charleston Gray)	carwcgB0422
Carg25948	CSPI02G12670	Wild cucumber (PI 183967)	carcpiB0468
Carg25948	Cucsa.109210	Cucumber (Gy14) v1	carcgyB0497
Carg25948	CmaCh02G003660	Cucurbita maxima (Rimu)	carcmaB0600
Carg25948	CmoCh02G003700	Cucurbita moschata (Rifu)	carcmoB0585
Carg25948	Lsi10G004130	Bottle gourd (USVL1VR-Ls)	carlsiB390
Carg25948	Cp4.1LG16g02730	Cucurbita pepo (Zucchini)	carcpeB0605
Carg25948	Cp4.1LG05g12870	Cucurbita pepo (Zucchini)	carcpeB0606
Carg25948	CsGy2G012720	Cucumber (Gy14) v2	carcgybB0439
Carg25948	MELO3C023346.2	Melon (DHL92) v3.6.1	carmedB0440
Carg25948	CsaV3_2G015210	Cucumber (Chinese Long) v3	carcucB0463
Carg25948	Cla97C11G210690	Watermelon (97103) v2	carwmbB0454
Carg25948	Bhi10G001555	Wax gourd	carwgoB0518

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25948	Cucurbita maxima (Rimu)	carcmaB0599
Carg25948	Cucurbita moschata (Rifu)	carcmoB0584