Carg25872 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25872
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	cullin-associated NEDD8-dissociated protein 1
Location	Cucurbita_argyrosperma_scaffold_337 : 107389 .. 108566 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACATCCTTAAGAGAGGTTTCGCCCAGCCAAATATCCTTCCCGAAACTAATCCTATGCTCATTTCCAACTTTGAATCTATCAAAATTTCGTACAGGGGGCGAATTTTGCAATACCACATCTGGGCTGGTTGTATGAGCGACCTTTATGATGAGATGACACACATCCTAGGGGTTTTTCCCCATAGATACTAGCCACCTCCTACCTTGACAAAGCATTTCTTTCAGTTGGAAACCTCCAAAACCATTTAGTTAGGAGCACTGCATTTCTATGCTTGAGATACCCTATGACCTTGTATTATTTCATTTTCCCGATGAAAGTTGTTTTTCTTAAAAAAGAACACAATGATTAGAATATAATTGAGTTACAGCTGTAGCTATGGGTGCTCCAGATAATCTAGTAAGGAAGTGATTAACCAGATCTAATGAGTGAGTGAGTGATTAACTCTCAAGTGTTCTTGAAAGTAGCAAATTTTTCCTATAGAACGTCTGCATACAAGGGGATTCGATTGAAGCTTACAACAATTCCTGTGTATTGAGTTCGTTAGCTCATTTCCTATTGAGTTTGGGAAGATGATAGGATAACAAGATGGACCTAATTACTGCTAGACCTTATTACTGCTTGTAGTCTTCTTTTCTTTCTCTCAGTTATTTCATTTTGTTATCTACCATAGGTTGGTCTAATGGTCAATAAGAGCCATTGTAAAAAATAAAAACTGAGGAATGAGTTGAAATCATGATGGACACTTGGATTTAATATCCAATGAGCTATCTTGAGGGTGAAGTGAGATTAGTCGAGGCACATACTAGATTGGACACTCTGCACAAAGAGAAAAAAGAATTTGTTCCATTTAGTTGAAGTGCTTACATGGATTAATAAAATCACCTAGAGATGAAAATGTTCTCTAGTCCGGCCAGAGTGTTTATGCAACATGATTACTGTTAAATATGCATATAGATTTTCTCGTTCTGTAAGCAATTGATTGGATGTGATTACTGCACGATTAACTTGATCTTTGTGCATATAGGATCTCTCTAGTCCTGTTTTATCTGCTGTTGGAGAGCGTTATTATAAGGTTACTGCTGAAGCATTGAGAGTATGTGGGGAACTTGTTCGGGTTGTTCGTCCTGGTATTGAGGTGAGTTCAAGTTCCACTTTAAATGTAGAACTGTAG

mRNA sequence

ATGGAAGACATCCTTAAGAGAGGTTTCGCCCAGCCAAATATCCTTCCCGAAACTAATCCTATGCTCATTTCCAACTTTGAATCTATCAAAATTTCGTACAGGGGGCGAATTTTGCAATACCACATCTGGGCTGGTTGTATGAGCGACCTTTATGATGAGATGACACACATCCTAGGGGATCTCTCTAGTCCTGTTTTATCTGCTGTTGGAGAGCGTTATTATAAGGTTACTGCTGAAGCATTGAGAGTATGTGGGGAACTTGTTCGGGTTGTTCGTCCTGGTATTGAGGTGAGTTCAAGTTCCACTTTAAATGTAGAACTGTAG

Coding sequence (CDS)

ATGGAAGACATCCTTAAGAGAGGTTTCGCCCAGCCAAATATCCTTCCCGAAACTAATCCTATGCTCATTTCCAACTTTGAATCTATCAAAATTTCGTACAGGGGGCGAATTTTGCAATACCACATCTGGGCTGGTTGTATGAGCGACCTTTATGATGAGATGACACACATCCTAGGGGATCTCTCTAGTCCTGTTTTATCTGCTGTTGGAGAGCGTTATTATAAGGTTACTGCTGAAGCATTGAGAGTATGTGGGGAACTTGTTCGGGTTGTTCGTCCTGGTATTGAGGTGAGTTCAAGTTCCACTTTAAATGTAGAACTGTAG

Protein sequence

MEDILKRGFAQPNILPETNPMLISNFESIKISYRGRILQYHIWAGCMSDLYDEMTHILGDLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIEVSSSSTLNVEL

Homology

[Close]

BLAST of Carg25872 vs. NCBI nr
Match: XP_004133735.1 (PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Cucumis sativus] >XP_011650579.1 PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 60  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 97
           DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Sbjct: 511 DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 547

[Close]

BLAST of Carg25872 vs. NCBI nr
Match: KGN56281.1 (hypothetical protein Csa_3G112260 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 60  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 97
           DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Sbjct: 282 DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 318

[Close]

BLAST of Carg25872 vs. NCBI nr
Match: XP_022942398.1 (cullin-associated NEDD8-dissociated protein 1-like [Cucurbita moschata] >XP_022942399.1 cullin-associated NEDD8-dissociated protein 1-like [Cucurbita moschata])

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 60  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 97
           DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Sbjct: 511 DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 547

[Close]

BLAST of Carg25872 vs. NCBI nr
Match: XP_022929375.1 (cullin-associated NEDD8-dissociated protein 1 [Cucurbita moschata] >XP_022929376.1 cullin-associated NEDD8-dissociated protein 1 [Cucurbita moschata] >XP_023552220.1 cullin-associated NEDD8-dissociated protein 1 [Cucurbita pepo subsp. pepo] >XP_023552221.1 cullin-associated NEDD8-dissociated protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 60  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 97
           DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Sbjct: 511 DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 547

[Close]

BLAST of Carg25872 vs. NCBI nr
Match: XP_022976335.1 (cullin-associated NEDD8-dissociated protein 1-like [Cucurbita maxima] >XP_022976341.1 cullin-associated NEDD8-dissociated protein 1-like [Cucurbita maxima])

HSP 1 Score: 75.5 bits (184), Expect = 1.2e-10
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 60  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 97
           DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Sbjct: 511 DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 547

[Close]

BLAST of Carg25872 vs. TAIR10
Match: AT2G02560.1 (cullin-associated and neddylation dissociated)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-11
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 61  LSSPVLSAVGERYYKVTAEALRVCGELVRVVRP 94
           LSSPVL+AVGERYYKVTAEALRVCGELVRVVRP
Sbjct: 513 LSSPVLAAVGERYYKVTAEALRVCGELVRVVRP 545

[Close]

BLAST of Carg25872 vs. Swiss-Prot
Match: sp|Q8L5Y6|CAND1_ARATH (Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana OX=3702 GN=CAND1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-10
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0


Query: 61  LSSPVLSAVGERYYKVTAEALRVCGELVRVVRP 94
           LSSPVL+AVGERYYKVTAEALRVCGELVRVVRP
Sbjct: 513 LSSPVLAAVGERYYKVTAEALRVCGELVRVVRP 545

[Close]

BLAST of Carg25872 vs. TrEMBL
Match: tr|A0A0A0L837|A0A0A0L837_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G112260 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.2e-11
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 60  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 97
           DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE
Sbjct: 282 DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 318

[Close]

BLAST of Carg25872 vs. TrEMBL
Match: tr|A0A061G8M4|A0A061G8M4_THECC (Cullin-associated and neddylation dissociated OS=Theobroma cacao OX=3641 GN=TCM_046820 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.1e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 60  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIEV 98
           DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRP +EV
Sbjct: 511 DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPNLEV 548

[Close]

BLAST of Carg25872 vs. TrEMBL
Match: tr|A0A1U8IUK7|A0A1U8IUK7_GOSHI (cullin-associated NEDD8-dissociated protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107900608 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.9e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 60  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 97
           DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRP +E
Sbjct: 510 DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPNLE 546

[Close]

BLAST of Carg25872 vs. TrEMBL
Match: tr|A0A1U8PR55|A0A1U8PR55_GOSHI (cullin-associated NEDD8-dissociated protein 1-like OS=Gossypium hirsutum OX=3635 GN=LOC107961951 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.9e-10
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 60  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 97
           DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRP +E
Sbjct: 511 DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPNLE 547

[Close]

BLAST of Carg25872 vs. TrEMBL
Match: tr|A0A1S3BTD2|A0A1S3BTD2_CUCME (cullin-associated NEDD8-dissociated protein 1 OS=Cucumis melo OX=3656 GN=LOC103493300 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.9e-10
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0


Query: 60  DLSSPVLSAVGERYYKVTAEALRVCGELVRVVRPGIE 97
           DLSSPVLSAV ERYYKVTAEALRVCGELVRVVRPGIE
Sbjct: 511 DLSSPVLSAVEERYYKVTAEALRVCGELVRVVRPGIE 547

The following BLAST results are available for this feature:

BLAST of Carg25872 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004133735.1	1.2e-10	100.00	PREDICTED: cullin-associated NEDD8-dissociated protein 1 [Cucumis sativus] >XP_0...	[more]
KGN56281.1	1.2e-10	100.00	hypothetical protein Csa_3G112260 [Cucumis sativus]	[more]
XP_022942398.1	1.2e-10	100.00	cullin-associated NEDD8-dissociated protein 1-like [Cucurbita moschata] >XP_0229...	[more]
XP_022929375.1	1.2e-10	100.00	cullin-associated NEDD8-dissociated protein 1 [Cucurbita moschata] >XP_022929376...	[more]
XP_022976335.1	1.2e-10	100.00	cullin-associated NEDD8-dissociated protein 1-like [Cucurbita maxima] >XP_022976...	[more]

BLAST of Carg25872 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G02560.1	1.8e-11	96.97	cullin-associated and neddylation dissociated	[more]

BLAST of Carg25872 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8L5Y6\|CAND1_ARATH	3.2e-10	96.97	Cullin-associated NEDD8-dissociated protein 1 OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of Carg25872 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L837\|A0A0A0L837_CUCSA	8.2e-11	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G112260 PE=4 SV=1	[more]
tr\|A0A061G8M4\|A0A061G8M4_THECC	3.1e-10	94.74	Cullin-associated and neddylation dissociated OS=Theobroma cacao OX=3641 GN=TCM_...	[more]
tr\|A0A1U8IUK7\|A0A1U8IUK7_GOSHI	6.9e-10	94.59	cullin-associated NEDD8-dissociated protein 1-like OS=Gossypium hirsutum OX=3635...	[more]
tr\|A0A1U8PR55\|A0A1U8PR55_GOSHI	6.9e-10	94.59	cullin-associated NEDD8-dissociated protein 1-like OS=Gossypium hirsutum OX=3635...	[more]
tr\|A0A1S3BTD2\|A0A1S3BTD2_CUCME	6.9e-10	97.30	cullin-associated NEDD8-dissociated protein 1 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011989	ARM-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25872-RA	Carg25872-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 46..106 e-value: 9.8E-9 score: 35.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25872	MELO3C016464	Melon (DHL92) v3.5.1	carmeB0007
Carg25872	CmoCh04G009460	Cucurbita moschata (Rifu)	carcmoB0015

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25872	Cucumber (Gy14) v2	carcgybB0008
Carg25872	Cucurbita maxima (Rimu)	carcmaB0014
Carg25872	Cucurbita maxima (Rimu)	carcmaB0015
Carg25872	Cucurbita moschata (Rifu)	carcmoB0014
Carg25872	Cucurbita pepo (Zucchini)	carcpeB0012
Carg25872	Cucurbita pepo (Zucchini)	carcpeB0013
Carg25872	Wild cucumber (PI 183967)	carcpiB0009
Carg25872	Cucumber (Chinese Long) v2	carcuB0009
Carg25872	Cucumber (Chinese Long) v3	carcucB0009
Carg25872	Bottle gourd (USVL1VR-Ls)	carlsiB008
Carg25872	Melon (DHL92) v3.6.1	carmedB0008
Carg25872	Watermelon (Charleston Gray)	carwcgB0009
Carg25872	Watermelon (97103) v2	carwmbB0008