Carg25232 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25232
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	4-hydroxy-4-methyl-2-oxoglutarate aldolase
Location	Cucurbita_argyrosperma_scaffold_189 : 291993 .. 293355 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGGCTTAAATTCACCAACGCGCTGTTTTTGATTGTTCGATTCGACGGTTTTGGGCCTTGATTTCCACAGAAGAACAGGGCTTTCAATTGGTGAGTTTCCTCCGTCATTTTATCTCCACTTTTTTTCTTATACATGGAATATTGTTTAATCGAGTTTCAAATAGTTTGATGTGTTGAGAACTTGAAAATCCAGTTTAGTTTGTCTGAATCTCTTTGGTACGAGGCCATTTGAAGAAATCGAAAGCAAAACTATGAAAGTACAGTAGTGATTCCTAGAACTTAACCTAATCTGTGCTGTAAACTGGATTCTCATTTCTTCCTAAATTGGCTGGGAATGCTGTGCTAGTTGTTCTTCATGGGAGAAGTATTTAAGCCTTCTTCCATTGGATAGGAGAGAACTTTCTCTGTGAACAGAGGGTAGATGAAGCTCTGATTGTGCCTTGAAAAATATAGTTTAAACCATGGTTTCACTTGCACCATCCATACACATTGATGCTCAAGCTCTTTCTTGTCTGTCCATCAAGTGTTTAATCAAAATTAACTTATAAAATCTATGTACTCTTGATATGAAACAACTGAATTTCATTTATCTCTTGTGTTGATGCCATATATCAAATCACTGTTAAACAACTTTTGCGTTGTTAATGTGTGATCGTACATCGGTTGTGGAGGAGAACGAATCACTCTTTATAAGGGTGTGAAATCCTCTCCCTAGCAAACACATTTTAAAAACCTTGAGGGGAAGTTTAGAAGGGAAAGCCCAAAGATGACAATATTGGCTGATGGTGAGCTTGGACCGTTACAAATGCACATCGCCCTGTGTATGGCTTTGATACCATGTGTAACATCTTCTCTTTCGCTTTAAGATCCATGAGATTCAGAGAGTTAGATAAAGTCTTACTGGGTGGGAGCTCTATCTACTCGTCTAGGCTGAGTGGCATCTATTAAGAAGGCCGGGATTCTCTCAAAATAGAATGATTAATATCCATAGAGATGGCTACGTCCCAGTTCTTCTCTTGTATGAATGAAGGCCGTTTCGTTCAAGACCTTATCTCGTATGAATGAAGACCGTTTCCTTCAAGACCTCTGGCAGGCAAGTCAAGCCATTATAGGCTAGTCCCCTAGATGAAGCAGGAGGAAGGAATGAAGTCGATCTATTTTGGTATTTTCTGATCTTTCTGTGAAAGTTACTTCAAAACTATATCCTAACTATTGACATATCCTTGCCAGAGTGGGAAGGCATGGCAGCACCAGCAACAGCAGAAGTTTGTGATACAAATGCAGGACATATCACAAGCGGAGGTCTCCGAGTACTGCAAGCGTCATTCGAGATTTACGGGACGGATAGTGACGGTGAA

mRNA sequence

ATGGTGTGGCTTAAATTCACCAACGCGCTGTTTTTGATTGTTCGATTCGACGAGTGGGAAGGCATGGCAGCACCAGCAACAGCAGAAGTTTGTGATACAAATGCAGGACATATCACAAGCGGAGGTCTCCGAGTACTGCAAGCGTCATTCGAGATTTACGGGACGGATAGTGACGGTGAA

Coding sequence (CDS)

ATGGTGTGGCTTAAATTCACCAACGCGCTGTTTTTGATTGTTCGATTCGACGAGTGGGAAGGCATGGCAGCACCAGCAACAGCAGAAGTTTGTGATACAAATGCAGGACATATCACAAGCGGAGGTCTCCGAGTACTGCAAGCGTCATTCGAGATTTACGGGACGGATAGTGACGGTGAA

Protein sequence

MVWLKFTNALFLIVRFDEWEGMAAPATAEVCDTNAGHITSGGLRVLQASFEIYGTDSDGE

Homology

[Close]

BLAST of Carg25232 vs. NCBI nr
Match: XP_004148273.1 (PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_004148274.1 PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >XP_011650460.1 PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativus] >KGN55987.1 hypothetical protein Csa_3G044520 [Cucumis sativus])

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA+VCD NA H+T+G LRVLQ  FEIYG
Sbjct: 1  MAAPATADVCDANAAHVTNGDLRVLQPKFEIYG 33

[Close]

BLAST of Carg25232 vs. NCBI nr
Match: XP_008448991.1 (PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] >XP_008448992.1 PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 2.0e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA+VCD NA H+T+G LRVLQ  FEIYG
Sbjct: 1  MAAPATADVCDANAAHVTNGDLRVLQPKFEIYG 33

[Close]

BLAST of Carg25232 vs. NCBI nr
Match: XP_023540534.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo] >XP_023540535.1 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-05
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA++CD NA H+TSG LRVLQ  F+IYG
Sbjct: 1  MAAPATADICDANAAHVTSGDLRVLQQKFKIYG 33

[Close]

BLAST of Carg25232 vs. NCBI nr
Match: XP_022949864.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 4.4e-05
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA++CD NA H+TSG LRVLQ  F++YG
Sbjct: 1  MAAPATADICDANAAHVTSGDLRVLQQKFKVYG 33

[Close]

BLAST of Carg25232 vs. NCBI nr
Match: XP_022143459.1 (putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 9.7e-05
Identity = 23/33 (69.70%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MA+PATA++CD NA H+ SG LRVLQ+ FEIYG
Sbjct: 1  MASPATADICDANAAHVASGDLRVLQSVFEIYG 33

[Close]

BLAST of Carg25232 vs. TAIR10
Match: AT5G56260.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase)

HSP 1 Score: 41.2 bits (95), Expect = 2.6e-04
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAA ATAE CD+NA  I++G LR L   F+IYG
Sbjct: 1  MAAFATAEACDSNAELISNGDLRALHPIFKIYG 33

[Close]

BLAST of Carg25232 vs. TAIR10
Match: AT3G02770.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase)

HSP 1 Score: 40.0 bits (92), Expect = 5.9e-04
Identity = 20/33 (60.61%), Postives = 21/33 (63.64%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MA   TAEVCD N   I SG LR LQ  F+IYG
Sbjct: 1  MAFVTTAEVCDANQEMIRSGQLRALQPVFQIYG 33

[Close]

BLAST of Carg25232 vs. TAIR10
Match: AT5G16450.1 (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase)

HSP 1 Score: 39.7 bits (91), Expect = 7.7e-04
Identity = 20/33 (60.61%), Postives = 21/33 (63.64%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MA   TAEVCD N   I SG LR LQ  F+IYG
Sbjct: 1  MAFVTTAEVCDANQELIRSGQLRALQPIFQIYG 33

[Close]

BLAST of Carg25232 vs. TrEMBL
Match: tr|A0A1S3BKF1|A0A1S3BKF1_CUCME (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC103490998 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA+VCD NA H+T+G LRVLQ  FEIYG
Sbjct: 1  MAAPATADVCDANAAHVTNGDLRVLQPKFEIYG 33

[Close]

BLAST of Carg25232 vs. TrEMBL
Match: tr|A0A0A0L5X9|A0A0A0L5X9_CUCSA (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G044520 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-05
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAAPATA+VCD NA H+T+G LRVLQ  FEIYG
Sbjct: 1  MAAPATADVCDANAAHVTNGDLRVLQPKFEIYG 33

[Close]

BLAST of Carg25232 vs. TrEMBL
Match: tr|G7IK19|G7IK19_MEDTR (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Medicago truncatula OX=3880 GN=11418846 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.1e-04
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MA+P TAE+CDTNA HI SG LR+L   F+IYG
Sbjct: 1  MASPRTAEICDTNATHIASGDLRILHPVFQIYG 33

[Close]

BLAST of Carg25232 vs. TrEMBL
Match: tr|D7UAV2|D7UAV2_VITVI (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Vitis vinifera OX=29760 GN=VIT_19s0015g01900 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.1e-04
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAA ATAEVCD+NA H+TSG LRVLQ  F+ YG
Sbjct: 1  MAALATAEVCDSNAAHLTSGDLRVLQPIFQSYG 33

[Close]

BLAST of Carg25232 vs. TrEMBL
Match: tr|A5C5H1|A5C5H1_VITVI (4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Vitis vinifera OX=29760 GN=VITISV_040370 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.1e-04
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 0


Query: 22 MAAPATAEVCDTNAGHITSGGLRVLQASFEIYG 55
          MAA ATAEVCD+NA H+TSG LRVLQ  F+ YG
Sbjct: 1  MAALATAEVCDSNAAHLTSGDLRVLQPIFQSYG 33

The following BLAST results are available for this feature:

BLAST of Carg25232 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148273.1	2.0e-05	75.76	PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis sativu...	[more]
XP_008448991.1	2.0e-05	75.76	PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucumis melo] ...	[more]
XP_023540534.1	3.3e-05	72.73	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita pepo subsp. pep...	[more]
XP_022949864.1	4.4e-05	69.70	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Cucurbita moschata]	[more]
XP_022143459.1	9.7e-05	69.70	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 3 [Momordica charantia]	[more]

BLAST of Carg25232 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G56260.1	2.6e-04	60.61	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT3G02770.1	5.9e-04	60.61	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]
AT5G16450.1	7.7e-04	60.61	Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase	[more]

BLAST of Carg25232 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg25232 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKF1\|A0A1S3BKF1_CUCME	1.3e-05	75.76	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis melo OX=3656 GN=LOC1034909...	[more]
tr\|A0A0A0L5X9\|A0A0A0L5X9_CUCSA	1.3e-05	75.76	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Cucumis sativus OX=3659 GN=Csa_3G0...	[more]
tr\|G7IK19\|G7IK19_MEDTR	7.1e-04	66.67	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Medicago truncatula OX=3880 GN=114...	[more]
tr\|D7UAV2\|D7UAV2_VITVI	7.1e-04	72.73	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Vitis vinifera OX=29760 GN=VIT_19s...	[more]
tr\|A5C5H1\|A5C5H1_VITVI	7.1e-04	72.73	4-hydroxy-4-methyl-2-oxoglutarate aldolase OS=Vitis vinifera OX=29760 GN=VITISV_...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25232-RA	Carg25232-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25232	Cla004432	Watermelon (97103) v1	carwmB0016
Carg25232	Csa3G044520	Cucumber (Chinese Long) v2	carcuB0014
Carg25232	MELO3C014067	Melon (DHL92) v3.5.1	carmeB0015
Carg25232	CSPI03G03790	Wild cucumber (PI 183967)	carcpiB0014
Carg25232	Cucsa.041710	Cucumber (Gy14) v1	carcgyB0014
Carg25232	CmaCh06G006990	Cucurbita maxima (Rimu)	carcmaB0025
Carg25232	CmoCh06G007180	Cucurbita moschata (Rifu)	carcmoB0026
Carg25232	Lsi07G014260	Bottle gourd (USVL1VR-Ls)	carlsiB013
Carg25232	Cp4.1LG08g08140	Cucurbita pepo (Zucchini)	carcpeB0029
Carg25232	CsGy3G003800	Cucumber (Gy14) v2	carcgybB0013
Carg25232	MELO3C014067.2	Melon (DHL92) v3.6.1	carmedB0016
Carg25232	CsaV3_3G003850	Cucumber (Chinese Long) v3	carcucB0014
Carg25232	Bhi11G000327	Wax gourd	carwgoB0016

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25232	Cucurbita moschata (Rifu)	carcmoB0025
Carg25232	Cucurbita pepo (Zucchini)	carcpeB0028
Carg25232	Watermelon (Charleston Gray)	carwcgB0016
Carg25232	Watermelon (Charleston Gray)	carwcgB0017
Carg25232	Watermelon (97103) v2	carwmbB0013
Carg25232	Cucurbita maxima (Rimu)	carcmaB0024