Carg19492 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg19492
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	acyl-CoA-binding protein
Location	Cucurbita_argyrosperma_scaffold_204 : 472314 .. 473733 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATATATATAAATTTCTTTTGAAGGCGATTACTCGGCGATTTATTCCTTCTGTTCCACTCACCTCCATGTATTTAAAAGCTCCACACTCGTCGTCCTCCCCAGTTAGTATTTCGTTTCTGTATTGAGCTTCGAGTCGCCATGGGTTTGAAGGTAGGTTTCTCTCTCATTCTTCTTCTGAATTCTCAGTTTCTTTACGTTATTAGCTTCGAAGCTCTCAATCCTTCTCTTTATGCCATTTTCTTGTTCGACCAGTAGTTGAATTCTTCGTTTAGAATGGGTGATTTGATGCCGAATGATTATGCTTTAGCTTTTCATTGGTGATGATCTTGGCATTGAGTTAGGGTATTAGTGCAGATCGCTGCATGTCTCTTGTTTTGCGTCGTAGTTATGCATTCATAATATGTTAGATTTGTTGGACTTCGTTAGAATGATTTCTGTTGGATCTGTCTTTTCAGATCTGTGTTTTTTAGAGTCGATCTGTGTTTTCCTTTCGAAGAATGAACGACATCTGGTCGTTCCGGATCGAGAGATGTTAATCTTTTGGTTGTTTCCAAATTGATTGCTTGACTCTAGATATTTAGGGCAATAGGTGCAGAGAATTGTAAGAACTTCATATATTTGTTCTGTTATATTGAACTAAAAGCACGCAGTCTGTATCACAACTTGATGAGGCTGAGTTCTGCAGGAGGAGTTTGAGGAGTATGCTGAGAAGGCAAAGACCTTGCCGGAGAACACAAGCAATGAAAACAAACTCATTCTCTATGGACTATACAAGCAGGCCACTGTTGGACCCGTGAACACTAGTAAGTACTGTCTTTCATTGAATATAATTTCTAAAGAAAATTTGTGTATAGATGGAATTATGTGATCAAATTCTCCAATGTAACCGTTTATTGCAACTATGATTGATTTGTAGGCCGACCTGGAGTGTTCAACCAGAGAGACAGAGCCAAATGGGATGCCTGGAAGGCTGTTGAAGGTATGTTTTCTCAGAATTCAACACTATGAAATGGATTTTCTCTATTTTGCGATGACATTGAAATATGTTTACTCTTTTTTGCCATGAACTCTATTAGATTAAAGATTTGTAAAAAATGTACAACAACGAGCTTGATTGAAGAGAATTAAATGTTTTTGCAGCAAAATCCAAGGATGATGCAATGAGCGACTACATCACGAAGGTGAAACAGTTACAAGAGGCAGCTGCTGCTAACTGATAAGTTTCTCGATTATCTGTATGAACAATGATGTTGAAATAATCCTTGTTTAAGTTCAGTACTTTTATCATATTTATCTACATTGTGTAACAATGAACTACACAATGAACTATGTGCAAGTATTATTACTATTGGATTTCGCTAATGAATCTTCAACCTTTTAACCAAATTAATATACTTGGGCTTGTTAATTGCTTT

mRNA sequence

TATATATATATATAAATTTCTTTTGAAGGCGATTACTCGGCGATTTATTCCTTCTGTTCCACTCACCTCCATGTATTTAAAAGCTCCACACTCGTCGTCCTCCCCAGTTAGTATTTCGTTTCTGTATTGAGCTTCGAGTCGCCATGGGTTTGAAGGAGGAGTTTGAGGAGTATGCTGAGAAGGCAAAGACCTTGCCGGAGAACACAAGCAATGAAAACAAACTCATTCTCTATGGACTATACAAGCAGGCCACTGTTGGACCCGTGAACACTAGCCGACCTGGAGTGTTCAACCAGAGAGACAGAGCCAAATGGGATGCCTGGAAGGCTGTTGAAGCAAAATCCAAGGATGATGCAATGAGCGACTACATCACGAAGGTGAAACAGTTACAAGAGGCAGCTGCTGCTAACTGATAAGTTTCTCGATTATCTGTATGAACAATGATGTTGAAATAATCCTTGTTTAAGTTCAGTACTTTTATCATATTTATCTACATTGTGTAACAATGAACTACACAATGAACTATGTGCAAGTATTATTACTATTGGATTTCGCTAATGAATCTTCAACCTTTTAACCAAATTAATATACTTGGGCTTGTTAATTGCTTT

Coding sequence (CDS)

ATGGGTTTGAAGGAGGAGTTTGAGGAGTATGCTGAGAAGGCAAAGACCTTGCCGGAGAACACAAGCAATGAAAACAAACTCATTCTCTATGGACTATACAAGCAGGCCACTGTTGGACCCGTGAACACTAGCCGACCTGGAGTGTTCAACCAGAGAGACAGAGCCAAATGGGATGCCTGGAAGGCTGTTGAAGCAAAATCCAAGGATGATGCAATGAGCGACTACATCACGAAGGTGAAACAGTTACAAGAGGCAGCTGCTGCTAACTGA

Protein sequence

MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAWKAVEAKSKDDAMSDYITKVKQLQEAAAAN

Homology

[Close]

BLAST of Carg19492 vs. NCBI nr
Match: XP_022923252.1 (acyl-CoA-binding protein [Cucurbita moschata] >XP_022965372.1 acyl-CoA-binding protein [Cucurbita maxima] >XP_023551848.1 acyl-CoA-binding protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.7 bits (452), Expect = 8.6e-42
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAAN 90
          KAVEAKSKDDAMSDYITKVKQLQEAAAAN
Sbjct: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAAN 89

[Close]

BLAST of Carg19492 vs. NCBI nr
Match: XP_022145449.1 (acyl-CoA-binding protein [Momordica charantia])

HSP 1 Score: 172.2 bits (435), Expect = 8.1e-40
Identity = 84/89 (94.38%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKE+FEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPG+FNQRDRAKWDAW
Sbjct: 1  MGLKEDFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGLFNQRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAAN 90
          KAVEAKSKDDAM+DYITKVKQLQEAAA++
Sbjct: 61 KAVEAKSKDDAMNDYITKVKQLQEAAASS 89

[Close]

BLAST of Carg19492 vs. NCBI nr
Match: XP_022937196.1 (acyl-CoA-binding domain-containing protein 1 [Cucurbita moschata] >XP_023540555.1 acyl-CoA-binding domain-containing protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-39
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVG VNTSRPGVF QRDRAKWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGAVNTSRPGVFYQRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAAN 90
          KAVEAKSKDDAMSDYITKVKQLQE+AAAN
Sbjct: 61 KAVEAKSKDDAMSDYITKVKQLQESAAAN 89

[Close]

BLAST of Carg19492 vs. NCBI nr
Match: XP_023005811.1 (acyl-CoA-binding domain-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 171.4 bits (433), Expect = 1.4e-39
Identity = 86/89 (96.63%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKEEFEEYAEKAKTL ENTSNENKLILYGLYKQATVG VNTSRPGVFNQRDRAKWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLSENTSNENKLILYGLYKQATVGAVNTSRPGVFNQRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAAN 90
          KAVEAKSKDDAMSDYITKVKQLQE+AAAN
Sbjct: 61 KAVEAKSKDDAMSDYITKVKQLQESAAAN 89

[Close]

BLAST of Carg19492 vs. NCBI nr
Match: XP_008448583.1 (PREDICTED: acyl-CoA-binding protein [Cucumis melo])

HSP 1 Score: 166.8 bits (421), Expect = 3.4e-38
Identity = 81/89 (91.01%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKE+FEEYAEKAKTLPENTSNENKLILYGLYKQATVGPV TSRPG+FNQ++RAKWDAW
Sbjct: 1  MGLKEDFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVTTSRPGMFNQKERAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAAN 90
          KAVEAKSK+DAM+DYITKVKQLQEAAAA+
Sbjct: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 89

[Close]

BLAST of Carg19492 vs. TAIR10
Match: AT1G31812.1 (acyl-CoA-binding protein 6)

HSP 1 Score: 130.6 bits (327), Expect = 4.9e-31
Identity = 64/88 (72.73%), Postives = 75/88 (85.23%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKEEFEE+AEK  TL E  SNE+ LILYGLYKQA  GPV+TSRPG+F+ ++RAKWDAW
Sbjct: 1  MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVDTSRPGMFSMKERAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAA 89
          KAVE KS ++AM+DYITKVKQL E AA+
Sbjct: 61 KAVEGKSSEEAMNDYITKVKQLLEVAAS 88

[Close]

BLAST of Carg19492 vs. TAIR10
Match: AT5G53470.1 (acyl-CoA binding protein 1)

HSP 1 Score: 60.1 bits (144), Expect = 8.1e-10
Identity = 32/75 (42.67%), Postives = 40/75 (53.33%), Query Frame = 0


Query: 11  AEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAWKAVEAKSKDD 70
           A  +  L +  SNE +L LYGLYK AT GP    +P       RAKW AW+ + A   ++
Sbjct: 107 AAASDRLSQKVSNELQLQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEE 166

Query: 71  AMSDYITKVKQLQEA 86
           AM  YI  V QL  A
Sbjct: 167 AMEKYIDLVTQLYPA 181

[Close]

BLAST of Carg19492 vs. TAIR10
Match: AT4G27780.1 (acyl-CoA binding protein 2)

HSP 1 Score: 52.8 bits (125), Expect = 1.3e-07
Identity = 27/69 (39.13%), Postives = 36/69 (52.17%), Query Frame = 0


Query: 14  AKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAWKAVEAKSKDDAMS 73
           A  L +   ++ +  LYGLYK AT GP    +P       RAKW AW+ + A   ++AM 
Sbjct: 120 ADRLSQKVPSDVQQQLYGLYKIATEGPCTAPQPSALKMTARAKWQAWQKLGAMPPEEAME 179

Query: 74  DYITKVKQL 83
            YI  V QL
Sbjct: 180 KYIEIVTQL 188

[Close]

BLAST of Carg19492 vs. TAIR10
Match: AT3G05420.2 (acyl-CoA binding protein 4)

HSP 1 Score: 50.4 bits (119), Expect = 6.4e-07
Identity = 21/63 (33.33%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 14 AKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAWKAVEAKSKDDAMS 73
          AK +     ++  L+LY LY+QATVGP NT +P  +   +++KW +W+ +      +AM 
Sbjct: 32 AKNVISKFPDDTALLLYALYQQATVGPCNTPKPSAWRPVEQSKWKSWQGLGTMPSIEAMR 91

Query: 74 DYI 77
           ++
Sbjct: 92 LFV 94

[Close]

BLAST of Carg19492 vs. TAIR10
Match: AT5G27630.1 (acyl-CoA binding protein 5)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-06
Identity = 25/71 (35.21%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 15  KTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAWKAVEAKSKDDAMSD 74
           K L    SN+  L+LY L++QAT+GP +  +P  +N  +++KW +W+ +      +AM  
Sbjct: 34  KQLSSKFSNDTSLLLYTLHQQATLGPCSIPKPSAWNPVEQSKWKSWQGLGTMPSIEAMRL 93

Query: 75  YITKVKQLQEA 86
           +   VK L+EA
Sbjct: 94  F---VKILEEA 101

[Close]

BLAST of Carg19492 vs. Swiss-Prot
Match: sp|Q75G87|ACBP3_ORYSJ (Acyl-CoA-binding domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=ACBP3 PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.3e-37
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGL+E+FEEYAEK KTLPE+TSNE+KLILYGLYKQATVG VNTSRPG+F QRDRAKWDAW
Sbjct: 1  MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVNTSRPGIFAQRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAA 89
          KAVE KSK++AMSDYITKVKQLQE AAA
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQLQEEAAA 88

[Close]

BLAST of Carg19492 vs. Swiss-Prot
Match: sp|O04066|ACBP_RICCO (Acyl-CoA-binding protein OS=Ricinus communis OX=3988 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.3e-37
Identity = 76/89 (85.39%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKE+FEE+AEKAKTLPENT+NENKLILYGLYKQATVGPVNTSRPG+FN RDRAKWDAW
Sbjct: 1  MGLKEDFEEHAEKAKTLPENTTNENKLILYGLYKQATVGPVNTSRPGMFNMRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAAN 90
          KAVE KS ++AMSDYITKVKQL   AAA+
Sbjct: 61 KAVEGKSTEEAMSDYITKVKQLLGEAAAS 89

[Close]

BLAST of Carg19492 vs. Swiss-Prot
Match: sp|Q84SC3|ACBP1_ORYSJ (Acyl-CoA-binding domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=ACBP1 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 9.7e-37
Identity = 75/88 (85.23%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGL+E+FE+YAEKAKTLPE+TSNENKLILYGLYKQATVG VNT+RPG+F QRDRAKWDAW
Sbjct: 1  MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTARPGIFAQRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAA 89
          KAVE KSK++AMSDYITKVKQL E AAA
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQLLEEAAA 88

[Close]

BLAST of Carg19492 vs. Swiss-Prot
Match: sp|Q5VRM0|ACBP2_ORYSJ (Acyl-CoA-binding domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=ACBP2 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-33
Identity = 68/89 (76.40%), Postives = 80/89 (89.89%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGL+EEFEE+AEKAKTLP+  SNE+KL+LYGLYKQATVGPV T RPG+FN +DR KWDAW
Sbjct: 1  MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVTTGRPGIFNLKDRYKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAAN 90
          KAVE KSK++AM+DYITKVKQL E A+A+
Sbjct: 61 KAVEGKSKEEAMADYITKVKQLLEEASAS 89

[Close]

BLAST of Carg19492 vs. Swiss-Prot
Match: sp|O22643|ACBP_FRIAG (Acyl-CoA-binding protein OS=Fritillaria agrestis OX=64177 GN=ACABP PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-33
Identity = 69/87 (79.31%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          M LKEEFEE+A KAKTLPE+TSNENKLILYGLYKQ+TVGPV+T RPG+F+ R+RAKWDAW
Sbjct: 1  MALKEEFEEHAVKAKTLPESTSNENKLILYGLYKQSTVGPVDTGRPGMFSPRERAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAA 88
          KAVE KSK++AM DYITKVKQL E +A
Sbjct: 61 KAVEGKSKEEAMGDYITKVKQLLEESA 87

[Close]

BLAST of Carg19492 vs. TrEMBL
Match: tr|A0A1S3BKW8|A0A1S3BKW8_CUCME (acyl-CoA-binding protein OS=Cucumis melo OX=3656 GN=LOC103490717 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-38
Identity = 81/89 (91.01%), Postives = 88/89 (98.88%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKE+FEEYAEKAKTLPENTSNENKLILYGLYKQATVGPV TSRPG+FNQ++RAKWDAW
Sbjct: 1  MGLKEDFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVTTSRPGMFNQKERAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAAN 90
          KAVEAKSK+DAM+DYITKVKQLQEAAAA+
Sbjct: 61 KAVEAKSKEDAMNDYITKVKQLQEAAAAS 89

[Close]

BLAST of Carg19492 vs. TrEMBL
Match: tr|A0A2P4GPK5|A0A2P4GPK5_QUESU (Acyl-coa-binding protein OS=Quercus suber OX=58331 GN=CFP56_33020 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.9e-38
Identity = 81/89 (91.01%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKEEFEE+AEKAKTLPENT+NENKLILYGLYKQATVGPVNTSRPG+FN RDRAKWDAW
Sbjct: 1  MGLKEEFEEHAEKAKTLPENTTNENKLILYGLYKQATVGPVNTSRPGIFNMRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAAN 90
          KAVE KSKD+AMSDYITKVKQLQE AAA+
Sbjct: 61 KAVEGKSKDEAMSDYITKVKQLQEEAAAS 89

[Close]

BLAST of Carg19492 vs. TrEMBL
Match: tr|A0A2C9UIZ2|A0A2C9UIZ2_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G182400 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.9e-38
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKEEFEEYAEKAKTLPENT+NENKLILYGLYKQATVGPVNTSRPG+FN RDRAKWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVNTSRPGIFNMRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAA 89
          KAVE KSK++AMSDYITKVKQLQE AAA
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQLQEEAAA 88

[Close]

BLAST of Carg19492 vs. TrEMBL
Match: tr|K9ZUG4|K9ZUG4_VERFO (Acyl-CoA binding protein 6 OS=Vernicia fordii OX=73154 GN=ACBP6 PE=2 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.0e-38
Identity = 81/88 (92.05%), Postives = 85/88 (96.59%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKEEFEEYAEKAKTLPENT+NENKLILYGLYKQATVGPVNTSRPG+FNQRDRAKWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVNTSRPGIFNQRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAA 89
          KAVE KSK++AMSDYITKVKQL E AAA
Sbjct: 61 KAVEGKSKEEAMSDYITKVKQLLEEAAA 88

[Close]

BLAST of Carg19492 vs. TrEMBL
Match: tr|M0SQ12|M0SQ12_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103982003 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 6.5e-38
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MGLKEEFEEYAEKAKTLPENTSNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60
          MGLKEEFEEYAEKAKTLPENT+NENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW
Sbjct: 1  MGLKEEFEEYAEKAKTLPENTTNENKLILYGLYKQATVGPVNTSRPGVFNQRDRAKWDAW 60

Query: 61 KAVEAKSKDDAMSDYITKVKQLQEAAAA 89
           AVE KSK+DAMSDYITKVKQL E AAA
Sbjct: 61 MAVEGKSKEDAMSDYITKVKQLLEEAAA 88

The following BLAST results are available for this feature:

BLAST of Carg19492 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923252.1	8.6e-42	100.00	acyl-CoA-binding protein [Cucurbita moschata] >XP_022965372.1 acyl-CoA-binding p...	[more]
XP_022145449.1	8.1e-40	94.38	acyl-CoA-binding protein [Momordica charantia]	[more]
XP_022937196.1	1.4e-39	96.63	acyl-CoA-binding domain-containing protein 1 [Cucurbita moschata] >XP_023540555....	[more]
XP_023005811.1	1.4e-39	96.63	acyl-CoA-binding domain-containing protein 1-like [Cucurbita maxima]	[more]
XP_008448583.1	3.4e-38	91.01	PREDICTED: acyl-CoA-binding protein [Cucumis melo]	[more]

BLAST of Carg19492 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31812.1	4.9e-31	72.73	acyl-CoA-binding protein 6	[more]
AT5G53470.1	8.1e-10	42.67	acyl-CoA binding protein 1	[more]
AT4G27780.1	1.3e-07	39.13	acyl-CoA binding protein 2	[more]
AT3G05420.2	6.4e-07	33.33	acyl-CoA binding protein 4	[more]
AT5G27630.1	1.4e-06	35.21	acyl-CoA binding protein 5	[more]

BLAST of Carg19492 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q75G87\|ACBP3_ORYSJ	3.3e-37	86.36	Acyl-CoA-binding domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|O04066\|ACBP_RICCO	3.3e-37	85.39	Acyl-CoA-binding protein OS=Ricinus communis OX=3988 PE=3 SV=1	[more]
sp\|Q84SC3\|ACBP1_ORYSJ	9.7e-37	85.23	Acyl-CoA-binding domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|Q5VRM0\|ACBP2_ORYSJ	1.3e-33	76.40	Acyl-CoA-binding domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
sp\|O22643\|ACBP_FRIAG	1.7e-33	79.31	Acyl-CoA-binding protein OS=Fritillaria agrestis OX=64177 GN=ACABP PE=3 SV=1	[more]

BLAST of Carg19492 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BKW8\|A0A1S3BKW8_CUCME	2.2e-38	91.01	acyl-CoA-binding protein OS=Cucumis melo OX=3656 GN=LOC103490717 PE=4 SV=1	[more]
tr\|A0A2P4GPK5\|A0A2P4GPK5_QUESU	2.9e-38	91.01	Acyl-coa-binding protein OS=Quercus suber OX=58331 GN=CFP56_33020 PE=4 SV=1	[more]
tr\|A0A2C9UIZ2\|A0A2C9UIZ2_MANES	2.9e-38	92.05	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G182400 PE=4 SV=...	[more]
tr\|K9ZUG4\|K9ZUG4_VERFO	5.0e-38	92.05	Acyl-CoA binding protein 6 OS=Vernicia fordii OX=73154 GN=ACBP6 PE=2 SV=1	[more]
tr\|M0SQ12\|M0SQ12_MUSAM	6.5e-38	93.18	Uncharacterized protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103982...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000062	fatty-acyl-CoA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR035984	Acyl-CoA-binding_sf
IPR022408	Acyl-CoA-binding_prot_CS
IPR014352	FERM/acyl-CoA-bd_prot_sf
IPR000582	Acyl-CoA-binding_protein

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000062	fatty-acyl-CoA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg19492-RA	Carg19492-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000582	Acyl-CoA-binding protein, ACBP	PRINTS	PR00689	ACOABINDINGP	coord: 21..39 score: 62.41 coord: 65..82 score: 50.0 coord: 44..59 score: 52.08 coord: 4..19 score: 43.45
IPR000582	Acyl-CoA-binding protein, ACBP	PFAM	PF00887	ACBP	coord: 5..82 e-value: 1.9E-27 score: 95.2
IPR000582	Acyl-CoA-binding protein, ACBP	PROSITE	PS51228	ACB_2	coord: 3..88 score: 39.304
IPR014352	FERM/acyl-CoA-binding protein superfamily	GENE3D	G3DSA:1.20.80.10		coord: 1..89 e-value: 1.2E-32 score: 113.7
None	No IPR available	PANTHER	PTHR23310	ACYL-COA-BINDING PROTEIN, ACBP	coord: 1..88
None	No IPR available	PANTHER	PTHR23310:SF67	SUBFAMILY NOT NAMED	coord: 1..88
IPR022408	Acyl-CoA-binding protein, ACBP, conserved site	PROSITE	PS00880	ACB_1	coord: 21..39
IPR035984	Acyl-CoA binding protein superfamily	SUPERFAMILY	SSF47027	Acyl-CoA binding protein	coord: 3..83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg19492	Cla008874	Watermelon (97103) v1	carwmB0425
Carg19492	Csa3G004510	Cucumber (Chinese Long) v2	carcuB0462
Carg19492	MELO3C013788	Melon (DHL92) v3.5.1	carmeB0437
Carg19492	ClCG10G000940	Watermelon (Charleston Gray)	carwcgB0421
Carg19492	CSPI03G00970	Wild cucumber (PI 183967)	carcpiB0467
Carg19492	Cucsa.322400	Cucumber (Gy14) v1	carcgyB0496
Carg19492	CmaCh06G005980	Cucurbita maxima (Rimu)	carcmaB0597
Carg19492	CmaCh16G012220	Cucurbita maxima (Rimu)	carcmaB0596
Carg19492	CmoCh06G006040	Cucurbita moschata (Rifu)	carcmoB0582
Carg19492	CmoCh16G012650	Cucurbita moschata (Rifu)	carcmoB0581
Carg19492	Cp4.1LG14g10020	Cucurbita pepo (Zucchini)	carcpeB0601
Carg19492	Cp4.1LG08g09030	Cucurbita pepo (Zucchini)	carcpeB0604
Carg19492	CsGy3G000910	Cucumber (Gy14) v2	carcgybB0438
Carg19492	MELO3C031937.2	Melon (DHL92) v3.6.1	carmedB0439
Carg19492	CsaV3_3G001010	Cucumber (Chinese Long) v3	carcucB0462
Carg19492	Cla97C10G185550	Watermelon (97103) v2	carwmbB0453
Carg19492	BhiUN179G7	Wax gourd	carwgoB0517

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg19492	Carg16284	Silver-seed gourd	carcarB442

The following block(s) are covering this gene:


Gene	Organism	Block
Carg19492	Bottle gourd (USVL1VR-Ls)	carlsiB389