Carg16105 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16105
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Eukaryotic translation initiation factor 3 subunit C like
Location	Cucurbita_argyrosperma_scaffold_068 : 123713 .. 124228 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTATTTTTCAATCTCCAAAACAAACCCATTTCCGCTTCACAAATCTTTACACCAACAACAACAAGAAGAACAGAAAGAACTAACCTTTCTCTCCTCCGATCACCGGAATTTCTCGTCGGCGTCAGCTCCTACTGTGGATTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGATCACCGAGGAATCTGAAGTGGAGTGGCCGTTTTTTGACCGGTCAACGGCGAATAACCTTTACCGGTCTGATGATGGTTCCATTTCTGACGAGGAAAGTTTGATTGAAATCGCTCTCCCGACCGGACATTACGTCAGCCATAAGTCCGATGACGACGACGACGACATGTCGTTTTGTTTCCAGAAACTGTCGGAGTTTCAAAAGCTGAAGAGGAAGAAGAATCTTGTGGAGCTGTTGGCTGAAATTAACGACATCAACGAGGAGGAGAATTTGATCGAGATAGACATATCTATGGGATCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

mRNA sequence

ATGCTTTATTTTTCAATCTCCAAAACAAACCCATTTCCGCTTCACAAATCTTTACACCAACAACAACAAGAAGAACAGAAAGAACTAACCTTTCTCTCCTCCGATCACCGGAATTTCTCGTCGGCGTCAGCTCCTACTGTGGATTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGATCACCGAGGAATCTGAAGTGGAGTGGCCGTTTTTTGACCGGTCAACGGCGAATAACCTTTACCGGTCTGATGATGGTTCCATTTCTGACGAGGAAAGTTTGATTGAAATCGCTCTCCCGACCGGACATTACGTCAGCCATAAGTCCGATGACGACGACGACGACATGTCGTTTTGTTTCCAGAAACTGTCGGAGTTTCAAAAGCTGAAGAGGAAGAAGAATCTTGTGGAGCTGTTGGCTGAAATTAACGACATCAACGAGGAGGAGAATTTGATCGAGATAGACATATCTATGGGATCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

Coding sequence (CDS)

ATGCTTTATTTTTCAATCTCCAAAACAAACCCATTTCCGCTTCACAAATCTTTACACCAACAACAACAAGAAGAACAGAAAGAACTAACCTTTCTCTCCTCCGATCACCGGAATTTCTCGTCGGCGTCAGCTCCTACTGTGGATTTGCTGTCGGAAAGTGAATGTGCCGATGATAATTTCACGATCACCGAGGAATCTGAAGTGGAGTGGCCGTTTTTTGACCGGTCAACGGCGAATAACCTTTACCGGTCTGATGATGGTTCCATTTCTGACGAGGAAAGTTTGATTGAAATCGCTCTCCCGACCGGACATTACGTCAGCCATAAGTCCGATGACGACGACGACGACATGTCGTTTTGTTTCCAGAAACTGTCGGAGTTTCAAAAGCTGAAGAGGAAGAAGAATCTTGTGGAGCTGTTGGCTGAAATTAACGACATCAACGAGGAGGAGAATTTGATCGAGATAGACATATCTATGGGATCCATTAAATATTCAAGGTTCGAAATTGAAGCTTAA

Protein sequence

MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDDDDDMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA

Homology

[Close]

BLAST of Carg16105 vs. NCBI nr
Match: XP_022985724.1 (uncharacterized protein LOC111483694 [Cucurbita maxima])

HSP 1 Score: 312.4 bits (799), Expect = 9.6e-82
Identity = 165/173 (95.38%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60
           MLYFSISKTNPFPLHKSLH QQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF
Sbjct: 55  MLYFSISKTNPFPLHKSLHHQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 114

Query: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDD--XXXXMS 120
           T TEESEVEWPFFDRSTA NLYRSDDGSISDEESLIEIALPTGHYV+HKSDD  XX  MS
Sbjct: 115 TTTEESEVEWPFFDRSTAKNLYRSDDGSISDEESLIEIALPTGHYVNHKSDDXXXXDDMS 174

Query: 121 FCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
           FCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 175 FCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 227

[Close]

BLAST of Carg16105 vs. NCBI nr
Match: XP_022943897.1 (uncharacterized protein LOC111448485 [Cucurbita moschata])

HSP 1 Score: 298.1 bits (762), Expect = 1.9e-77
Identity = 162/175 (92.57%), Postives = 162/175 (92.57%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60
           MLYFSISKTNPFPLHKSLHQQQ    KELTFLSSDHRNFSSASAPTVDLLSESECADDNF
Sbjct: 55  MLYFSISKTNPFPLHKSLHQQQXXXXKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 114

Query: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHK----SDDXXXX 120
           T TEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHK       XXXX
Sbjct: 115 TTTEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKXXXXXXXXXXX 174

Query: 121 MSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
            SFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 175 XSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 229

[Close]

BLAST of Carg16105 vs. NCBI nr
Match: XP_023513390.1 (uncharacterized protein LOC111777891 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.0 bits (689), Expect = 5.5e-69
Identity = 148/171 (86.55%), Postives = 150/171 (87.72%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 60
           MLYFSISKTNPFPLHKSLHQQQ+EEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF
Sbjct: 55  MLYFSISKTNPFPLHKSLHQQQEEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNF 114

Query: 61  TITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDXXXXMSFC 120
           T TEESEVEWPFFDRSTA N+YRSDDGSISDEESLIEIALPT HYVSHKS   XXX    
Sbjct: 115 TTTEESEVEWPFFDRSTAKNIYRSDDGSISDEESLIEIALPTRHYVSHKS---XXXXXXX 174

Query: 121 FQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
                      RKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 175 XXXXXXXXXXXRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 222

[Close]

BLAST of Carg16105 vs. NCBI nr
Match: KGN46609.1 (hypothetical protein Csa_6G112470 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 8.5e-46
Identity = 114/177 (64.41%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDN 60
           MLYFSISK N  P+ K +                       ASAPT+ DLLSESECADDN
Sbjct: 3   MLYFSISKRNSLPIRKFVQXXXXXXXXXXXXXXXXXXXXXXASAPTIEDLLSESECADDN 62

Query: 61  FTITEESEVEWPFFDR--STANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDD---XX 120
           FT TEESEVEWP+FD   +   N +RSDDGSISDEESLIEIALPTGHYVS K DD     
Sbjct: 63  FTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDE 122

Query: 121 XXMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
             +SF +QKL++FQ    +KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 123 DDISFRYQKLTDFQ----RKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 175

[Close]

BLAST of Carg16105 vs. NCBI nr
Match: XP_011656887.1 (PREDICTED: uncharacterized protein LOC105435780 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 8.5e-46
Identity = 114/177 (64.41%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDN 60
           MLYFSISK N  P+ K +                       ASAPT+ DLLSESECADDN
Sbjct: 56  MLYFSISKRNSLPIRKFVQXXXXXXXXXXXXXXXXXXXXXXASAPTIEDLLSESECADDN 115

Query: 61  FTITEESEVEWPFFDR--STANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDD---XX 120
           FT TEESEVEWP+FD   +   N +RSDDGSISDEESLIEIALPTGHYVS K DD     
Sbjct: 116 FTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDE 175

Query: 121 XXMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
             +SF +QKL++FQ    +KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 176 DDISFRYQKLTDFQ----RKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 228

[Close]

BLAST of Carg16105 vs. TAIR10
Match: AT2G04480.1 (unknown protein)

HSP 1 Score: 82.4 bits (202), Expect = 2.9e-16
Identity = 59/163 (36.20%), Postives = 88/163 (53.99%), Query Frame = 0


Query: 12  FPL---HKSLHQQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEV 71
           FP+   H S+   +Q++ +E  +++            T D+  +SE   +N   T E + 
Sbjct: 125 FPISLPHSSIQSSKQDQDQEGHYIA------------TKDITGKSE---ENLEKTNEED- 184

Query: 72  EWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDDXXXXMSFCFQKLSEFQ 131
                           DDG+I D+ESLIE++LP+GHY+ H  +     + +   K+ +F+
Sbjct: 185 ----------------DDGAIPDDESLIELSLPSGHYLGHHYNSNKNHL-YIHNKVQDFR 244

Query: 132 KLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
                  L +LL EIND  EE+NLIEIDIS+GSIKYSRFEI+A
Sbjct: 245 -------LFDLLNEINDFTEEDNLIEIDISIGSIKYSRFEIKA 247

[Close]

BLAST of Carg16105 vs. TAIR10
Match: AT5G35870.1 (unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.6e-12
Identity = 42/101 (41.58%), Postives = 63/101 (62.38%), Query Frame = 0


Query: 76  STANNLYRS---DDGSISDEESLIEIALPTGHYVSHKSDD--XXXXMSFCFQKLSEFQKL 135
           +T N++ ++   DDG+I DEESLIE++LP+GHY+ H              +  + +F+  
Sbjct: 107 TTTNDIVKNNDEDDGTIPDEESLIELSLPSGHYIGHHYSTMIGKQDQKIMYNNIPDFR-- 166

Query: 136 KRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
                L++L AE     E++NLIEIDIS+GSIK SRF+I+A
Sbjct: 167 -----LIQLSAEY----EDDNLIEIDISIGSIKCSRFQIKA 196

[Close]

BLAST of Carg16105 vs. TrEMBL
Match: tr|A0A0A0KCP7|A0A0A0KCP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 5.6e-46
Identity = 114/177 (64.41%), Postives = 126/177 (71.19%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTV-DLLSESECADDN 60
           MLYFSISK N  P+ K +                       ASAPT+ DLLSESECADDN
Sbjct: 3   MLYFSISKRNSLPIRKFVQXXXXXXXXXXXXXXXXXXXXXXASAPTIEDLLSESECADDN 62

Query: 61  FTITEESEVEWPFFDR--STANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDD---XX 120
           FT TEESEVEWP+FD   +   N +RSDDGSISDEESLIEIALPTGHYVS K DD     
Sbjct: 63  FTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDE 122

Query: 121 XXMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
             +SF +QKL++FQ    +KNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 123 DDISFRYQKLTDFQ----RKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 175

[Close]

BLAST of Carg16105 vs. TrEMBL
Match: tr|A0A1S3CMD0|A0A1S3CMD0_CUCME (uncharacterized protein LOC103502111 OS=Cucumis melo OX=3656 GN=LOC103502111 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 113/181 (62.43%), Postives = 122/181 (67.40%), Query Frame = 0


Query: 1   MLYFSISKTNPFPLHKSLHQQQQEEQKELTFLSSDHRNFSSASAPTV---DLLSESECAD 60
           MLYFSISK +  P+ K +                                DLLSESECAD
Sbjct: 56  MLYFSISKRSSLPIQKFVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLLSESECAD 115

Query: 61  DNFTITEESEVEWPFFDRS--TANNLYRSDDGSISDEESLIEIALPTGHYVSHKSDD--- 120
           DNFT TEESEVEWP+FD     A + +RSDDGSISDEESLIEIALPTGHYVS K DD   
Sbjct: 116 DNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDX 175

Query: 121 --XXXXMSFCFQKLSEFQKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYSRFEIE 172
             XXXX  F +QKLS+FQ    KKNLVE+LAEINDINEEENLIEIDISMGSIKYSRFEIE
Sbjct: 176 XXXXXXTPFRYQKLSDFQ----KKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIE 232

[Close]

BLAST of Carg16105 vs. TrEMBL
Match: tr|A0A1R3GJ42|A0A1R3GJ42_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25591 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.1e-28
Identity = 79/157 (50.32%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 20  QQQQEEQKELTFLSSDHRNFSSASAPTVDLLSESECADDNFTITEESEVEWPFFDRSTAN 79
           QQ+Q  +      +  ++ +      + D++SE+EC D   T TE+SEV+WPF D+   +
Sbjct: 100 QQKQASESSEQAETGSYQIYHDYLVRSPDVMSENECVDQMST-TEDSEVDWPFRDKMDQS 159

Query: 80  NLYRSDDGSISDEESLIEIALPTGHYVSHKSDDXXXXMSFCFQKLSEFQKLK-----RKK 139
             Y SDDGSISDE+SLIEI+LP GHYVSHK +D      F FQ+  + Q        +++
Sbjct: 160 PDY-SDDGSISDEDSLIEISLPGGHYVSHKEEDQPNNKKFNFQQKVQLQDFTPESFFQQR 219

Query: 140 NLVELLAEINDINEEENLIEIDISMGSIKYSRFEIEA 172
           +L+ELLAE+N++NEEENLIEIDISMGSIK SRFEIEA
Sbjct: 220 SLMELLAELNEMNEEENLIEIDISMGSIKCSRFEIEA 254

[Close]

BLAST of Carg16105 vs. TrEMBL
Match: tr|A0A061DM67|A0A061DM67_THECC (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_002409 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.2e-25
Identity = 72/126 (57.14%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 48  DLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVS 107
           D+LSE+EC  D  + TE+SEV+WPF D    +  Y   DGSISDE+SLIEI+LP GHYV 
Sbjct: 128 DVLSENECV-DQLSTTEDSEVDWPFQDNIDQSPDY--SDGSISDEDSLIEISLPGGHYVG 187

Query: 108 HKSDDXXXXMSFCFQKLSEF--QKLKRKKNLVELLAEINDINEEENLIEIDISMGSIKYS 167
           HK +     M    QKL +F  +   ++++L+ELLAE N++NEE+NLIEIDISMGSIK S
Sbjct: 188 HKEEKPKFSMQ---QKLPDFMPESFFQQRSLMELLAEFNEMNEEDNLIEIDISMGSIKCS 247

Query: 168 RFEIEA 172
           RFEIEA
Sbjct: 248 RFEIEA 247

[Close]

BLAST of Carg16105 vs. TrEMBL
Match: tr|A0A1R3J4J6|A0A1R3J4J6_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19617 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.5e-25
Identity = 73/132 (55.30%), Postives = 94/132 (71.21%), Query Frame = 0


Query: 48  DLLSESECADDNFTITEESEVEWPFFDRSTANNLYRSDDGSISDEESLIEIALPTGHYVS 107
           D++SE+EC D   T TE+SEV+WPF D+   +  Y SDDGSISDE+SLIEI+LP GHYVS
Sbjct: 140 DVMSENECVDQMST-TEDSEVDWPFRDKMDQSPDY-SDDGSISDEDSLIEISLPGGHYVS 199

Query: 108 HKSDDXXXXMSFCFQKLSEFQKLK--------RKKNLVELLAEINDINEEENLIEIDISM 167
           H   +     +  F  L +  +L         ++++L+ELLAE+N++NEEENLIEIDISM
Sbjct: 200 HSHKEEKDQPNNKFLSLQQKIQLPDLTPESFFQQRSLMELLAELNEMNEEENLIEIDISM 259

Query: 168 GSIKYSRFEIEA 172
           GSIK SRFEIEA
Sbjct: 260 GSIKCSRFEIEA 269

The following BLAST results are available for this feature:

BLAST of Carg16105 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022985724.1	9.6e-82	95.38	uncharacterized protein LOC111483694 [Cucurbita maxima]	[more]
XP_022943897.1	1.9e-77	92.57	uncharacterized protein LOC111448485 [Cucurbita moschata]	[more]
XP_023513390.1	5.5e-69	86.55	uncharacterized protein LOC111777891 [Cucurbita pepo subsp. pepo]	[more]
KGN46609.1	8.5e-46	64.41	hypothetical protein Csa_6G112470 [Cucumis sativus]	[more]
XP_011656887.1	8.5e-46	64.41	PREDICTED: uncharacterized protein LOC105435780 [Cucumis sativus]	[more]

BLAST of Carg16105 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04480.1	2.9e-16	36.20	unknown protein	[more]
AT5G35870.1	2.6e-12	41.58	unknown protein	[more]

BLAST of Carg16105 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg16105 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCP7\|A0A0A0KCP7_CUCSA	5.6e-46	64.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1	[more]
tr\|A0A1S3CMD0\|A0A1S3CMD0_CUCME	1.2e-40	62.43	uncharacterized protein LOC103502111 OS=Cucumis melo OX=3656 GN=LOC103502111 PE=...	[more]
tr\|A0A1R3GJ42\|A0A1R3GJ42_COCAP	4.1e-28	50.32	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_25591 PE=4 ...	[more]
tr\|A0A061DM67\|A0A061DM67_THECC	4.2e-25	57.14	Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_002409 PE=4 SV=1	[more]
tr\|A0A1R3J4J6\|A0A1R3J4J6_9ROSI	5.5e-25	55.30	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19617 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16105-RA	Carg16105-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35708	FAMILY NOT NAMED	coord: 6..171

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16105	Csa6G112470	Cucumber (Chinese Long) v2	carcuB0378
Carg16105	MELO3C025957	Melon (DHL92) v3.5.1	carmeB0350
Carg16105	ClCG02G009210	Watermelon (Charleston Gray)	carwcgB0340
Carg16105	CSPI06G09250	Wild cucumber (PI 183967)	carcpiB0381
Carg16105	Cucsa.120250	Cucumber (Gy14) v1	carcgyB0408
Carg16105	CmaCh02G002330	Cucurbita maxima (Rimu)	carcmaB0487
Carg16105	CmaCh20G006850	Cucurbita maxima (Rimu)	carcmaB0486
Carg16105	CmoCh20G006800	Cucurbita moschata (Rifu)	carcmoB0473
Carg16105	CmoCh02G002360	Cucurbita moschata (Rifu)	carcmoB0474
Carg16105	Lsi10G000430	Bottle gourd (USVL1VR-Ls)	carlsiB315
Carg16105	Cp4.1LG05g13970	Cucurbita pepo (Zucchini)	carcpeB0489
Carg16105	Cp4.1LG16g03950	Cucurbita pepo (Zucchini)	carcpeB0485
Carg16105	CsGy6G009330	Cucumber (Gy14) v2	carcgybB0357
Carg16105	MELO3C025957.2	Melon (DHL92) v3.6.1	carmedB0356
Carg16105	CsaV3_6G009640	Cucumber (Chinese Long) v3	carcucB0382
Carg16105	Cla97C02G035600	Watermelon (97103) v2	carwmbB0363
Carg16105	Bhi10G001014	Wax gourd	carwgoB0433

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg16105	Carg05156	Silver-seed gourd	carcarB372

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16105	Bottle gourd (USVL1VR-Ls)	carlsiB316
Carg16105	Watermelon (Charleston Gray)	carwcgB0334
Carg16105	Watermelon (Charleston Gray)	carwcgB0336
Carg16105	Watermelon (97103) v1	carwmB0331
Carg16105	Watermelon (97103) v1	carwmB0334
Carg16105	Watermelon (97103) v2	carwmbB0357
Carg16105	Watermelon (97103) v2	carwmbB0358
Carg16105	Wax gourd	carwgoB0428
Carg16105	Wax gourd	carwgoB0429
Carg16105	Silver-seed gourd	carcarB232
Carg16105	Silver-seed gourd	carcarB378
Carg16105	Cucumber (Gy14) v2	carcgybB0361
Carg16105	Cucumber (Gy14) v1	carcgyB0404
Carg16105	Cucumber (Gy14) v1	carcgyB0405
Carg16105	Cucurbita maxima (Rimu)	carcmaB0483
Carg16105	Cucurbita maxima (Rimu)	carcmaB0484
Carg16105	Cucurbita moschata (Rifu)	carcmoB0470
Carg16105	Cucurbita moschata (Rifu)	carcmoB0471
Carg16105	Cucurbita pepo (Zucchini)	carcpeB0484
Carg16105	Cucurbita pepo (Zucchini)	carcpeB0487
Carg16105	Wild cucumber (PI 183967)	carcpiB0387
Carg16105	Cucumber (Chinese Long) v2	carcuB0384
Carg16105	Cucumber (Chinese Long) v3	carcucB0386