Carg15340 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15340
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_085 : 425175 .. 426722 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAAACCTTTTAATCACTTCCAAGTTTCATTTCGAATTTTGGCCTTCAGTTTTCTTTTCTTCATCTGAACATGGGGCAAAACTCTAATGGCTTGGACTGGCTTATGAATGTCTTCAAGAAAGAAATGGAGGACAGATGCTTGGAGATGTGTGATGTCTTGGAGAAGGTAAAACTATTAACGTCTTGTTCATACAGTTTCACTATTCCCCAAATTTTTGGCTAGTACTCGCGCTCTTAAAAATTGTTAAACTCAACCTCACATTCTTAAGCAGGAAGTCTTGAAATATGTAGAAGGCCAGCTAAATTCGGTTGATATTAATGAAGATCACTTCCAACAGCCACGTTTGGATGTTGGAGAAGATCAGTCTCCTGAGAAGGCGTATTGTGCAAATCAAAATGCATCTTCCTCGGTCGCTTTTGGGAATGTTCCAGGTGATTCTGATTGAAATTTGTGAAGTGGGTTTTGCTCTTGGTTTTCTGCATCGACAGTTTGGTTAAAGCTTTTTCCTTATTTTGGCTCTTTTTTGTGGTTCACAGAACCCTATCCCACTAATAGCATTATTCTTATTTAAAAGGATATTACATTGCAAATAAAGAAAAAAGAATCCAAATCCTTAAAAGGATGGGAGATGTGGATGTTTGACAGTTTAATTTGGGCTCAAGTAGCAACAACCACACCGTCTAATTCTTTTGCAATTAGAATGTGACATTTTCAGTGAAAAGATGCAATTATTGTGGAGAGTTTTCTCTCCTGGAACGGACAGATGTAGACAATCATGTAGGTTCTAATTCAAAAAACATATGCAATCATATTATCTACATTCTTAAGTAGTGAAAAATTTACATACCAGATTAGACAATCTTTGGATTTCTCGAAAAAATCAGGATTTCAGATGCTTCTATGATAATATTTAATTCTTGGTTGTCGTTTCCTGTAAAGAAAAGCAGATACAGGCACAGATGTAAAAACCTGCAAATGGACCTCCATCAGCTTTGGAAAAGGAAAAAGAGCAATAATATGTACTTTTGTTGTTACATCATTCATGTAATTGAATCTTACTATTACAGGGGAGCATCTTGTCAAGACAGAAGATGGAAAAACAATTCAAGCATCTAAAAAACAGAATCATCTCATTATTGAACCAAACCATTTCTCAGCTAACCAAAAAGTATGTGGAGATCACGAGGTATTATCATTACCATCTAAGTATGCATGCAAATGACAAAAATTTCTGAAATTTCCTGGTGCTTGGAATTAACGCATGGTATTCCAGAATGAAACTGTTTCTGCCAAATTAGAAATCAAACTATTTGTCTATAGACCTTAAAGAACGCTTAAATTTATGCTCTCTACTAGCGCATGGAACCAACTTATTTTTCTTGGCCTCTTTGACATTCTTTCAGATTGAAAACAAGAATGCTAAAGCAAATATATCATGGCCATCAAGGAAGCAGAGCCAAAAACCAAATGCAATTACCGATGAAATACTTAAGTGTTCTCCATCCACCAGACAAAATGATGAATTCCCCGACTGGGAGATTGTTTAG

mRNA sequence

TTAAACCTTTTAATCACTTCCAAGTTTCATTTCGAATTTTGGCCTTCAGTTTTCTTTTCTTCATCTGAACATGGGGCAAAACTCTAATGGCTTGGACTGGCTTATGAATGTCTTCAAGAAAGAAATGGAGGACAGATGCTTGGAGATGTGTGATGTCTTGGAGAAGGAAGTCTTGAAATATGTAGAAGGCCAGCTAAATTCGGTTGATATTAATGAAGATCACTTCCAACAGCCACGTTTGGATGTTGGAGAAGATCAGTCTCCTGAGAAGGCGTATTGTGCAAATCAAAATGCATCTTCCTCGGTCGCTTTTGGGAATGTTCCAGGGGAGCATCTTGTCAAGACAGAAGATGGAAAAACAATTCAAGCATCTAAAAAACAGAATCATCTCATTATTGAACCAAACCATTTCTCAGCTAACCAAAAAGTATGTGGAGATCACGAGATTGAAAACAAGAATGCTAAAGCAAATATATCATGGCCATCAAGGAAGCAGAGCCAAAAACCAAATGCAATTACCGATGAAATACTTAAGTGTTCTCCATCCACCAGACAAAATGATGAATTCCCCGACTGGGAGATTGTTTAG

Coding sequence (CDS)

ATGGGGCAAAACTCTAATGGCTTGGACTGGCTTATGAATGTCTTCAAGAAAGAAATGGAGGACAGATGCTTGGAGATGTGTGATGTCTTGGAGAAGGAAGTCTTGAAATATGTAGAAGGCCAGCTAAATTCGGTTGATATTAATGAAGATCACTTCCAACAGCCACGTTTGGATGTTGGAGAAGATCAGTCTCCTGAGAAGGCGTATTGTGCAAATCAAAATGCATCTTCCTCGGTCGCTTTTGGGAATGTTCCAGGGGAGCATCTTGTCAAGACAGAAGATGGAAAAACAATTCAAGCATCTAAAAAACAGAATCATCTCATTATTGAACCAAACCATTTCTCAGCTAACCAAAAAGTATGTGGAGATCACGAGATTGAAAACAAGAATGCTAAAGCAAATATATCATGGCCATCAAGGAAGCAGAGCCAAAAACCAAATGCAATTACCGATGAAATACTTAAGTGTTCTCCATCCACCAGACAAAATGATGAATTCCCCGACTGGGAGATTGTTTAG

Protein sequence

MGQNSNGLDWLMNVFKKEMEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVGEDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKVCGDHEIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV

Homology

[Close]

BLAST of Carg15340 vs. NCBI nr
Match: XP_022925761.1 (uncharacterized protein LOC111433073 isoform X1 [Cucurbita moschata])

HSP 1 Score: 348.2 bits (892), Expect = 1.6e-92
Identity = 171/172 (99.42%), Postives = 171/172 (99.42%), Query Frame = 0


Query: 1   MGQNSNGLDWLMNVFKKEMEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG 60
           MGQNSNGLDWLMNVFKK MEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG
Sbjct: 38  MGQNSNGLDWLMNVFKK-MEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG 97

Query: 61  EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKV 120
           EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKV
Sbjct: 98  EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKV 157

Query: 121 CGDHEIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 173
           CGDHEIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV
Sbjct: 158 CGDHEIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 208

[Close]

BLAST of Carg15340 vs. NCBI nr
Match: XP_023544557.1 (uncharacterized protein LOC111804099 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 339.0 bits (868), Expect = 9.7e-90
Identity = 167/172 (97.09%), Postives = 168/172 (97.67%), Query Frame = 0


Query: 1   MGQNSNGLDWLMNVFKKEMEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG 60
           MGQNSNGL+W MNVFKK MEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG
Sbjct: 82  MGQNSNGLEWFMNVFKK-MEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG 141

Query: 61  EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKV 120
           EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKV
Sbjct: 142 EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKV 201

Query: 121 CGDHEIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 173
           CG HEIENKNAKANISWPSRKQSQKPNAITDEILKCSPST QNDEFPDWEIV
Sbjct: 202 CGAHEIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTIQNDEFPDWEIV 252

[Close]

BLAST of Carg15340 vs. NCBI nr
Match: XP_022925762.1 (uncharacterized protein LOC111433073 isoform X2 [Cucurbita moschata])

HSP 1 Score: 327.0 bits (837), Expect = 3.8e-86
Identity = 165/172 (95.93%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MGQNSNGLDWLMNVFKKEMEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG 60
           MGQNSNGLDWLMNVFKK MEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG
Sbjct: 38  MGQNSNGLDWLMNVFKK-MEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG 97

Query: 61  EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKV 120
           EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQK 
Sbjct: 98  EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQK- 157

Query: 121 CGDHEIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 173
                IENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV
Sbjct: 158 -----IENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 202

[Close]

BLAST of Carg15340 vs. NCBI nr
Match: XP_023544558.1 (uncharacterized protein LOC111804099 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 320.9 bits (821), Expect = 2.7e-84
Identity = 162/172 (94.19%), Postives = 163/172 (94.77%), Query Frame = 0


Query: 1   MGQNSNGLDWLMNVFKKEMEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG 60
           MGQNSNGL+W MNVFKK MEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG
Sbjct: 82  MGQNSNGLEWFMNVFKK-MEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG 141

Query: 61  EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKV 120
           EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQK 
Sbjct: 142 EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQK- 201

Query: 121 CGDHEIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 173
                IENKNAKANISWPSRKQSQKPNAITDEILKCSPST QNDEFPDWEIV
Sbjct: 202 -----IENKNAKANISWPSRKQSQKPNAITDEILKCSPSTIQNDEFPDWEIV 246

[Close]

BLAST of Carg15340 vs. NCBI nr
Match: XP_022925763.1 (uncharacterized protein LOC111433073 isoform X3 [Cucurbita moschata])

HSP 1 Score: 317.4 bits (812), Expect = 3.0e-83
Identity = 154/156 (98.72%), Postives = 156/156 (100.00%), Query Frame = 0


Query: 17  KEMEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVGEDQSPEKAYCANQNAS 76
           ++MEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVGEDQSPEKAYCANQNAS
Sbjct: 30  QKMEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVGEDQSPEKAYCANQNAS 89

Query: 77  SSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKVCGDHEIENKNAKANIS 136
           SSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKVCGDHEIENKNAKANIS
Sbjct: 90  SSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKVCGDHEIENKNAKANIS 149

Query: 137 WPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 173
           WPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV
Sbjct: 150 WPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 185

[Close]

BLAST of Carg15340 vs. TrEMBL
Match: tr|A0A0A0KKC6|A0A0A0KKC6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519520 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 6.5e-50
Identity = 116/172 (67.44%), Postives = 128/172 (74.42%), Query Frame = 0


Query: 1   MGQNSNGLDWLMNVFKKEMEDRCLEMCDVLEKEVLKYVEGQLNSVDINEDHFQQPRLDVG 60
           MGQNSNGLDW +NVF K ME RCLEMCDVLEKE LKY +GQ NSV  +EDHFQ P L +G
Sbjct: 1   MGQNSNGLDWFINVFNK-MEGRCLEMCDVLEKEWLKYAKGQPNSVG-SEDHFQHPHLGLG 60

Query: 61  EDQSPEKAYCANQNASSSVAFGNVPGEHLVKTEDGKTIQASKKQNHLIIEPNHFSANQKV 120
           EDQSPEK + ANQ+ASS+ A      EHLV   D   IQ+S KQNH  IE NHFSANQ+V
Sbjct: 61  EDQSPEKEHWANQDASSAGALSKATEEHLV---DQGRIQSSDKQNHPPIESNHFSANQEV 120

Query: 121 CGDHEIENKNAKANISWPSRKQSQKPNAITDEILKCSPSTRQNDEFPDWEIV 173
           CG  +IENKN KANIS PSRKQSQK      EI+K SPST QNDEF DWEI+
Sbjct: 121 CGALKIENKNVKANISRPSRKQSQK----AKEIVKFSPSTIQNDEFSDWEII 163

The following BLAST results are available for this feature:

BLAST of Carg15340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925761.1	1.6e-92	99.42	uncharacterized protein LOC111433073 isoform X1 [Cucurbita moschata]	[more]
XP_023544557.1	9.7e-90	97.09	uncharacterized protein LOC111804099 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022925762.1	3.8e-86	95.93	uncharacterized protein LOC111433073 isoform X2 [Cucurbita moschata]	[more]
XP_023544558.1	2.7e-84	94.19	uncharacterized protein LOC111804099 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022925763.1	3.0e-83	98.72	uncharacterized protein LOC111433073 isoform X3 [Cucurbita moschata]	[more]

BLAST of Carg15340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg15340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg15340 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KKC6\|A0A0A0KKC6_CUCSA	6.5e-50	67.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G519520 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15340-RA	Carg15340-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15340	Cla009687	Watermelon (97103) v1	carwmB0545
Carg15340	Csa6G519520	Cucumber (Chinese Long) v2	carcuB0578
Carg15340	MELO3C007216	Melon (DHL92) v3.5.1	carmeB0554
Carg15340	ClCG01G023680	Watermelon (Charleston Gray)	carwcgB0531
Carg15340	CSPI06G35330	Wild cucumber (PI 183967)	carcpiB0584
Carg15340	Cucsa.046910	Cucumber (Gy14) v1	carcgyB0623
Carg15340	CmaCh03G013190	Cucurbita maxima (Rimu)	carcmaB0763
Carg15340	CmoCh03G013190	Cucurbita moschata (Rifu)	carcmoB0742
Carg15340	Lsi01G002480	Bottle gourd (USVL1VR-Ls)	carlsiB496
Carg15340	Cp4.1LG10g05470	Cucurbita pepo (Zucchini)	carcpeB0772
Carg15340	CsGy6G034830	Cucumber (Gy14) v2	carcgybB0554
Carg15340	MELO3C007216.2	Melon (DHL92) v3.6.1	carmedB0560
Carg15340	CsaV3_6G050840	Cucumber (Chinese Long) v3	carcucB0585
Carg15340	Cla97C01G023620	Watermelon (97103) v2	carwmbB0571
Carg15340	Bhi03G000234	Wax gourd	carwgoB0657

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15340	Wax gourd	carwgoB0659
Carg15340	Silver-seed gourd	carcarB174
Carg15340	Silver-seed gourd	carcarB499
Carg15340	Silver-seed gourd	carcarB508
Carg15340	Cucumber (Gy14) v2	carcgybB0552
Carg15340	Cucumber (Gy14) v1	carcgyB0626
Carg15340	Cucurbita maxima (Rimu)	carcmaB0761
Carg15340	Cucurbita maxima (Rimu)	carcmaB0762
Carg15340	Cucurbita maxima (Rimu)	carcmaB0766
Carg15340	Cucurbita moschata (Rifu)	carcmoB0739
Carg15340	Cucurbita moschata (Rifu)	carcmoB0741
Carg15340	Cucurbita moschata (Rifu)	carcmoB0745
Carg15340	Cucurbita pepo (Zucchini)	carcpeB0771
Carg15340	Cucurbita pepo (Zucchini)	carcpeB0773
Carg15340	Cucurbita pepo (Zucchini)	carcpeB0775
Carg15340	Wild cucumber (PI 183967)	carcpiB0582
Carg15340	Cucumber (Chinese Long) v2	carcuB0576
Carg15340	Cucumber (Chinese Long) v3	carcucB0583
Carg15340	Bottle gourd (USVL1VR-Ls)	carlsiB497
Carg15340	Melon (DHL92) v3.5.1	carmeB0551
Carg15340	Melon (DHL92) v3.6.1	carmedB0557
Carg15340	Watermelon (Charleston Gray)	carwcgB0532
Carg15340	Watermelon (97103) v1	carwmB0544
Carg15340	Watermelon (97103) v2	carwmbB0573