Carg12826 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12826
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Geranylgeranyl pyrophosphate synthase
Location	Cucurbita_argyrosperma_scaffold_043 : 511835 .. 512749 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTTCTCTCAATCTTCTGCAACTTCATGGAAATCCATCACTACCCAAGTTCCCAAATTCGAATTGGCTCCGTCCGGCGGTTTATTTCCGAGCTCCGGCGAGGGCGACGGTGGTCATGTCGCAGATCACTCCGTCGTACTGGGCGGCGATAAATGAAGATATTGACGATCATCTCCGGCGGGTCATTATTGCGAAGGACCCACCGGAAGTATACGAGCCATTGAGTCATTTTGTCTTCTCCGCCCCACGAAATTCCGCTGCAGCAATGTGTATTGCTGCCTGCGAGCTCGTCGGCGGCCGCCGGGATCAAGCTATGGCGGCGGCTACCGCACTCCAGCTCATCTATGCAGCGACGTACACTCGGGAGTATCCTCCACTGACGGCGCGTGGGAGTTCAAACGCCGCCGTGGTTGACCGTGTTTATGGCCCAAACATCCAGCTGCTGACTGGTGTTGGAATAGCTCCGATTGGGTTTGAGATTCTAGCTGGGTCGTGTGACTTGAGCGAGAGCGGGTCGGAGCGGGTTCGCCGCGTGATGGCGGAAATGGCTCGGGCAATGGGGTCAGAGGGGTGGATTGGGGGACAATTCAAGGAATTAGAGGAGGTGACGGCGGCGGTGGAGACGGAGGAAGTTATCGAGATGACGGAAGGTGAGCTACACGCGCGTGGAGGCGCGTGTGGTGCAATATTGGGAGGTGGAAATGAAGAGGAAATAGAGAAGATGAGGAAATATGGAAGAATTGTTGGAATGGTGAAGGGATTGTCAAAGAAAGTGTTTGGAGGGAAAGAAAATGAGAGAAAAAGAGAGAAAATTAATGAGTTGAAGGCTTTGGCTTTCAAGGAATTGGAGGGTTTCAAAGGAGAAAAAGTGGATCAAATGTGTAATTTCTTTGATTTCGAGGGGCTTTAG

mRNA sequence

ATGGCGATTTCTCTCAATCTTCTGCAACTTCATGGAAATCCATCACTACCCAAGTTCCCAAATTCGAATTGGCTCCGTCCGGCGGTTTATTTCCGAGCTCCGGCGAGGGCGACGGTGGTCATGTCGCAGATCACTCCGTCGTACTGGGCGGCGATAAATGAAGATATTGACGATCATCTCCGGCGGGTCATTATTGCGAAGGACCCACCGGAAGTATACGAGCCATTGAGTCATTTTGTCTTCTCCGCCCCACGAAATTCCGCTGCAGCAATGTGTATTGCTGCCTGCGAGCTCGTCGGCGGCCGCCGGGATCAAGCTATGGCGGCGGCTACCGCACTCCAGCTCATCTATGCAGCGACGTACACTCGGGAGTATCCTCCACTGACGGCGCGTGGGAGTTCAAACGCCGCCGTGGTTGACCGTGTTTATGGCCCAAACATCCAGCTGCTGACTGGTGTTGGAATAGCTCCGATTGGGTTTGAGATTCTAGCTGGGTCGTGTGACTTGAGCGAGAGCGGGTCGGAGCGGGTTCGCCGCGTGATGGCGGAAATGGCTCGGGCAATGGGGTCAGAGGGGTGGATTGGGGGACAATTCAAGGAATTAGAGGAGGTGACGGCGGCGGTGGAGACGGAGGAAGTTATCGAGATGACGGAAGGTGAGCTACACGCGCGTGGAGGCGCGTGTGGTGCAATATTGGGAGGTGGAAATGAAGAGGAAATAGAGAAGATGAGGAAATATGGAAGAATTGTTGGAATGGTGAAGGGATTGTCAAAGAAAGTGTTTGGAGGGAAAGAAAATGAGAGAAAAAGAGAGAAAATTAATGAGTTGAAGGCTTTGGCTTTCAAGGAATTGGAGGGTTTCAAAGGAGAAAAAGTGGATCAAATGTGTAATTTCTTTGATTTCGAGGGGCTTTAG

Coding sequence (CDS)

ATGGCGATTTCTCTCAATCTTCTGCAACTTCATGGAAATCCATCACTACCCAAGTTCCCAAATTCGAATTGGCTCCGTCCGGCGGTTTATTTCCGAGCTCCGGCGAGGGCGACGGTGGTCATGTCGCAGATCACTCCGTCGTACTGGGCGGCGATAAATGAAGATATTGACGATCATCTCCGGCGGGTCATTATTGCGAAGGACCCACCGGAAGTATACGAGCCATTGAGTCATTTTGTCTTCTCCGCCCCACGAAATTCCGCTGCAGCAATGTGTATTGCTGCCTGCGAGCTCGTCGGCGGCCGCCGGGATCAAGCTATGGCGGCGGCTACCGCACTCCAGCTCATCTATGCAGCGACGTACACTCGGGAGTATCCTCCACTGACGGCGCGTGGGAGTTCAAACGCCGCCGTGGTTGACCGTGTTTATGGCCCAAACATCCAGCTGCTGACTGGTGTTGGAATAGCTCCGATTGGGTTTGAGATTCTAGCTGGGTCGTGTGACTTGAGCGAGAGCGGGTCGGAGCGGGTTCGCCGCGTGATGGCGGAAATGGCTCGGGCAATGGGGTCAGAGGGGTGGATTGGGGGACAATTCAAGGAATTAGAGGAGGTGACGGCGGCGGTGGAGACGGAGGAAGTTATCGAGATGACGGAAGGTGAGCTACACGCGCGTGGAGGCGCGTGTGGTGCAATATTGGGAGGTGGAAATGAAGAGGAAATAGAGAAGATGAGGAAATATGGAAGAATTGTTGGAATGGTGAAGGGATTGTCAAAGAAAGTGTTTGGAGGGAAAGAAAATGAGAGAAAAAGAGAGAAAATTAATGAGTTGAAGGCTTTGGCTTTCAAGGAATTGGAGGGTTTCAAAGGAGAAAAAGTGGATCAAATGTGTAATTTCTTTGATTTCGAGGGGCTTTAG

Protein sequence

MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAATYTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEIEKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFDFEGL

Homology

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BLAST of Carg12826 vs. NCBI nr
Match: XP_023536167.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 572.4 bits (1474), Expect = 9.2e-160
Identity = 293/304 (96.38%), Postives = 295/304 (97.04%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL
Sbjct: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVIIAKDPP VYEPL HFVFSAPRNSAAAMCIAACELVGG RDQAMAAATALQLIYAAT
Sbjct: 61  RRVIIAKDPPAVYEPLGHFVFSAPRNSAAAMCIAACELVGGHRDQAMAAATALQLIYAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
           YTREYPPLTARG SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV
Sbjct: 121 YTREYPPLTARGISNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M EMARAMGSEGWIGGQFKELEEVTAA   EEVIEMTEGELHARGGACGAILGGG+EEEI
Sbjct: 181 MVEMARAMGSEGWIGGQFKELEEVTAA---EEVIEMTEGELHARGGACGAILGGGSEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYGRIVGMVKGLSKKVFGGKENERKREKI ELKALAFKELEGFKG+KVDQMCNFFD
Sbjct: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKIKELKALAFKELEGFKGQKVDQMCNFFD 300

Query: 301 FEGL 305
           FEGL
Sbjct: 301 FEGL 301

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BLAST of Carg12826 vs. NCBI nr
Match: XP_022975728.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 566.6 bits (1459), Expect = 5.0e-158
Identity = 286/304 (94.08%), Postives = 292/304 (96.05%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAP RATVVMSQITPSYWAAINEDI++HL
Sbjct: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPMRATVVMSQITPSYWAAINEDIEEHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RR+IIAKDPP VYEPL HFVFSAPRNSAAAMCIAACE VGG RDQAMAAATALQLIYAAT
Sbjct: 61  RRIIIAKDPPVVYEPLGHFVFSAPRNSAAAMCIAACEFVGGHRDQAMAAATALQLIYAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
           YTREYPPLTARGSSNAA+VDRVY PNIQLLTGVGIAPIGFEILAGSCDLSESGS+RVRRV
Sbjct: 121 YTREYPPLTARGSSNAAMVDRVYAPNIQLLTGVGIAPIGFEILAGSCDLSESGSDRVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M EMARAMGSEGWIGGQFKELEEVTAA E EEVIE TEGELHARGGACGAILG G+EEEI
Sbjct: 181 MGEMARAMGSEGWIGGQFKELEEVTAAAEAEEVIEKTEGELHARGGACGAILGSGSEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYGRIVGMVKGLSKKVFGGKENERKREKI ELKALAFKELEGFKGEKVDQMCNFFD
Sbjct: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKIKELKALAFKELEGFKGEKVDQMCNFFD 300

Query: 301 FEGL 305
           FEGL
Sbjct: 301 FEGL 304

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BLAST of Carg12826 vs. NCBI nr
Match: XP_004139865.1 (PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Cucumis sativus] >KGN44166.1 hypothetical protein Csa_7G211090 [Cucumis sativus])

HSP 1 Score: 429.1 bits (1102), Expect = 1.3e-116
Identity = 226/301 (75.08%), Postives = 247/301 (82.06%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQL  N + PKF  +N L P  Y R P R+  VMSQITPSYWAAINEDI+DHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNSLPPMPYVRLPPRSAAVMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVI  KDP  VYEPL HF+FSAPRNSA A+CIAACELVGG RDQAMAAATA+QLIYAAT
Sbjct: 61  RRVIPVKDPVAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAATAIQLIYAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
            T EYPPLTARG   A+VVDRVYG N+QL+TG GI P+GFEILA SCD SE GSERVRRV
Sbjct: 121 CTHEYPPLTARG-KRASVVDRVYGSNVQLMTGDGITPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M E+ARAMG+EGWIGGQF+ LEE       EEVIE TEG LHA GGACGAI+GGGNEEEI
Sbjct: 181 MVEVARAMGTEGWIGGQFRGLEE---EATVEEVIEKTEGGLHACGGACGAIMGGGNEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYG++VG+VKGL++ VFGGKENERKREKI ELK LAFKELEGF GE V Q+  F D
Sbjct: 241 EKMRKYGKLVGIVKGLTQIVFGGKENERKREKIEELKVLAFKELEGFNGEMVPQIYGFLD 297

Query: 301 F 302
           F
Sbjct: 301 F 297

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BLAST of Carg12826 vs. NCBI nr
Match: XP_016900454.1 (PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Cucumis melo])

HSP 1 Score: 349.7 bits (896), Expect = 9.7e-93
Identity = 186/271 (68.63%), Postives = 216/271 (79.70%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQL  N + PKF  +N + PA Y R P R+TV MSQITPSYWAAINEDI+DHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNLVPPAPYVRPPPRSTVFMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVI  KDP  VYEPL HF+ SAPRNSA+A+CIAACELVGG RDQAMAAATA+QLI+AAT
Sbjct: 61  RRVIPVKDPLAVYEPLGHFILSAPRNSASALCIAACELVGGHRDQAMAAATAIQLIHAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
            T EYPPLTA G + AAVV+RVY P+IQL+TG GIAP+GFEILA SCD SE GSERVRRV
Sbjct: 121 CTHEYPPLTASG-TRAAVVERVYKPSIQLMTGDGIAPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M E++RAMG+EGWIGGQF+ L+E       EEVIE  EG LHA GGACGAI+GGGNEEEI
Sbjct: 181 MVEVSRAMGTEGWIGGQFRGLDE---EATVEEVIEKREGGLHACGGACGAIMGGGNEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKRE 272
           EKMRKYG+++       ++ +  +  ER++E
Sbjct: 241 EKMRKYGKLI------EERRWRNRRQERRKE 261

[Close]

BLAST of Carg12826 vs. NCBI nr
Match: XP_023888195.1 (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like [Quercus suber])

HSP 1 Score: 240.7 bits (613), Expect = 6.3e-60
Identity = 139/299 (46.49%), Postives = 192/299 (64.21%), Query Frame = 0


Query: 8   LQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHLRRVIIAK 67
           L L+GN +      S+  R +     P R  +V      SYWA+IN DI+ HL++ I  +
Sbjct: 6   LHLNGNQTFHILSRSSVTRASF----PHRTMMVTMSQNQSYWASINADIESHLKQAIPLR 65

Query: 68  DPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAATYTREYPP 127
            P +V+EP+ H VF+AP+N A A+CIAACELVGG RDQAMAAA+ L+L+ AA++T E  P
Sbjct: 66  PPLQVFEPMHHLVFAAPQNPAPALCIAACELVGGHRDQAMAAASTLRLMQAASFTHEQLP 125

Query: 128 LTAR-GSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRVMAEMAR 187
           LT R    +   +   YGPNI+LL G G+ P GFE+LA S D +++ S+R+ RV  E+AR
Sbjct: 126 LTDRPRPKSRPTIHHAYGPNIELLLGDGMMPFGFELLARSDDPAQNNSDRILRVTIEIAR 185

Query: 188 AMGSEGWIGGQFKEL-------EEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEE 247
           A+GS+G + GQ+ EL       EE+      E+V +  EGELHA G ACGAILGGG+EEE
Sbjct: 186 AVGSQGMVEGQYYELECPQSEGEELCDIGWIEQVCKKKEGELHACGAACGAILGGGSEEE 245

Query: 248 IEKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNF 299
           IEK+R++G  VG ++G+      GK  +   + + EL+ LA KELE FKG KV+ + +F
Sbjct: 246 IEKLRRFGLYVGTIQGMLHG--AGKLEKGLMKVVEELRNLALKELEEFKGGKVEAISSF 298

[Close]

BLAST of Carg12826 vs. TAIR10
Match: AT4G38460.1 (geranylgeranyl reductase)

HSP 1 Score: 108.2 bits (269), Expect = 8.9e-24
Identity = 90/321 (28.04%), Postives = 146/321 (45.48%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNS--NWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDD 60
           M  S + + L    SLP+ P++    L PA    + + A   ++    +YW  +  +I+ 
Sbjct: 1   MLFSGSAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQ 60

Query: 61  HLRRVIIAKDPPEVYEPLSHFVFS-APRNSAAAMCIAACELVGGRRDQAMAAATALQLIY 120
            L   I  K P  +YE + + V +   + +   MC+AACEL GG R  A   A AL++++
Sbjct: 61  KLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVH 120

Query: 121 AATYTREYPPL-----TARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSES 180
           AA+   +  P        RG  +      VYG  + +L G  + P+ F+ +         
Sbjct: 121 AASLIHDDLPCMDDDPVRRGKPSN---HTVYGSGMAILAGDALFPLAFQHIVSHTPPDLV 180

Query: 181 GSERVRRVMAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAIL 240
               + R++ E+AR +GS G   GQ+ +LE          V E   G +      CG +L
Sbjct: 181 PRATILRLITEIARTVGSTGMAAGQYVDLE--GGPFPLSFVQEKKFGAMGECSAVCGGLL 240

Query: 241 GGGNEEEIEKMRKYGRIVGMVKGL-------SKKVFGGKENERKREKINELKALAFKELE 300
           GG  E+E++ +R+YGR VGM+  +        KK + G   +   E   ELK  A KEL+
Sbjct: 241 GGATEDELQSLRRYGRAVGMLYQVVDDITEDKKKSYDGGAEKGMMEMAEELKEKAKKELQ 300

Query: 301 GFK-----GEKVDQMCNFFDF 302
            F      G+ +  +  F D+
Sbjct: 301 VFDNKYGGGDTLVPLYTFVDY 316

[Close]

BLAST of Carg12826 vs. TAIR10
Match: AT2G18620.1 (Terpenoid synthases superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 8.6e-19
Identity = 61/211 (28.91%), Postives = 112/211 (53.08%), Query Frame = 0


Query: 51  AINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAA 110
           A+NE +D      +  ++P +++E + + + +  +     +CIAACELVGG    A+ AA
Sbjct: 65  AVNEALDS----AVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGEESVALPAA 124

Query: 111 TALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCD 170
            A+++I+  +   +  P               +V+G ++ +L G  +    FE LA S  
Sbjct: 125 CAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFEHLATSTA 184

Query: 171 LSESGSERVRRVMAEMARAMGSEGWIGGQFKEL-----EEVTAAVETEEVIEMTE-GELH 230
           +S +   RV R + E+A+A+GS+G + GQ  +L     ++    +E  E I + +   L 
Sbjct: 185 VSPA---RVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLL 244

Query: 231 ARGGACGAILGGGNEEEIEKMRKYGRIVGMV 254
                 GAI+GGG++EE+EK+R++ R +G++
Sbjct: 245 EAATVLGAIVGGGSDEEVEKLRRFARCIGLL 268

[Close]

BLAST of Carg12826 vs. TAIR10
Match: AT2G18640.1 (geranylgeranyl pyrophosphate synthase 4)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-18
Identity = 74/287 (25.78%), Postives = 137/287 (47.74%), Query Frame = 0


Query: 48  YWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAM 107
           Y  +  E I+  L   I   +P  +++ + + + +  +     +C+AACELVGG    A+
Sbjct: 84  YMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAI 143

Query: 108 AAATALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAG 167
            AA A+++I+  +  ++  P               +V+G ++ +L+G  +  + FE L  
Sbjct: 144 QAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT- 203

Query: 168 SCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKE-----LEEVTAAVETEEVIEMTE-G 227
             D+S   S+++ R + E+A+++G++G + GQ K+     LE+    +E  E I + + G
Sbjct: 204 EADVS---SKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTG 263

Query: 228 ELHARGGACGAILGGGNEEEIEKMRKYGRIVGMV------------------KGLSKKVF 287
            L       GA++GGG E+EIEK+R + R +G++                  K   K   
Sbjct: 264 SLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKV 323

Query: 288 GGKEN-------ERKREKINELKALAFKELEGFKGEKVDQMCNFFDF 302
            GK         E+ +E + +LK  A + L+GF  +KV  +    +F
Sbjct: 324 AGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNF 366

[Close]

BLAST of Carg12826 vs. TAIR10
Match: AT4G36810.1 (geranylgeranyl pyrophosphate synthase 1)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-18
Identity = 60/215 (27.91%), Postives = 108/215 (50.23%), Query Frame = 0


Query: 47  SYWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQA 106
           SY     E ++  L   +  ++P +++E + + + +  +     +CIAACELVGG    A
Sbjct: 78  SYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTA 137

Query: 107 MAAATALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILA 166
           M AA A+++I+  +   +  P               +V+G ++ +L G  +    FE LA
Sbjct: 138 MPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLA 197

Query: 167 GSCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKE-----LEEVTAAVETEEVIEMTE- 226
            +         RV R + E+A+A+G+EG + GQ  +     L+     +E  E I + + 
Sbjct: 198 SATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKT 257

Query: 227 GELHARGGACGAILGGGNEEEIEKMRKYGRIVGMV 254
             L       GAI+GGG+++EIE++RK+ R +G++
Sbjct: 258 AALLEASAVLGAIVGGGSDDEIERLRKFARCIGLL 292

[Close]

BLAST of Carg12826 vs. TAIR10
Match: AT2G23800.1 (geranylgeranyl pyrophosphate synthase 2)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-18
Identity = 59/214 (27.57%), Postives = 111/214 (51.87%), Query Frame = 0


Query: 48  YWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAM 107
           Y  +  E ++  L   I   +P +++E + + + +A +     +C+A+CELVGG+ + AM
Sbjct: 88  YMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAM 147

Query: 108 AAATALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAG 167
            AA A+++I+  +  ++  P               +VYG  + +L+G  +  + FE +  
Sbjct: 148 PAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAILSGGALLSLAFEHMT- 207

Query: 168 SCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKE-----LEEVTAAVETEEVIEMTE-G 227
               +E  SER+   + E+AR++G+ G + GQ  +     L+     +E  E I + +  
Sbjct: 208 ---TAEISSERMVWAVRELARSIGTRGLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTA 267

Query: 228 ELHARGGACGAILGGGNEEEIEKMRKYGRIVGMV 254
            L       GAI+GGG++EEIE +RK+ R +G++
Sbjct: 268 VLLETAAVLGAIIGGGSDEEIESVRKFARCIGLL 297

[Close]

BLAST of Carg12826 vs. Swiss-Prot
Match: sp|Q39108|GGR_ARATH (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-22
Identity = 90/321 (28.04%), Postives = 146/321 (45.48%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNS--NWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDD 60
           M  S + + L    SLP+ P++    L PA    + + A   ++    +YW  +  +I+ 
Sbjct: 1   MLFSGSAIPLSSFCSLPEKPHTLPMKLSPAAIRSSSSSAPGSLNFDLRTYWTTLITEINQ 60

Query: 61  HLRRVIIAKDPPEVYEPLSHFVFS-APRNSAAAMCIAACELVGGRRDQAMAAATALQLIY 120
            L   I  K P  +YE + + V +   + +   MC+AACEL GG R  A   A AL++++
Sbjct: 61  KLDEAIPVKHPAGIYEAMRYSVLAQGAKRAPPVMCVAACELFGGDRLAAFPTACALEMVH 120

Query: 121 AATYTREYPPL-----TARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSES 180
           AA+   +  P        RG  +      VYG  + +L G  + P+ F+ +         
Sbjct: 121 AASLIHDDLPCMDDDPVRRGKPSN---HTVYGSGMAILAGDALFPLAFQHIVSHTPPDLV 180

Query: 181 GSERVRRVMAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAIL 240
               + R++ E+AR +GS G   GQ+ +LE          V E   G +      CG +L
Sbjct: 181 PRATILRLITEIARTVGSTGMAAGQYVDLE--GGPFPLSFVQEKKFGAMGECSAVCGGLL 240

Query: 241 GGGNEEEIEKMRKYGRIVGMVKGL-------SKKVFGGKENERKREKINELKALAFKELE 300
           GG  E+E++ +R+YGR VGM+  +        KK + G   +   E   ELK  A KEL+
Sbjct: 241 GGATEDELQSLRRYGRAVGMLYQVVDDITEDKKKSYDGGAEKGMMEMAEELKEKAKKELQ 300

Query: 301 GFK-----GEKVDQMCNFFDF 302
            F      G+ +  +  F D+
Sbjct: 301 VFDNKYGGGDTLVPLYTFVDY 316

[Close]

BLAST of Carg12826 vs. Swiss-Prot
Match: sp|Q94ID7|GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.1e-18
Identity = 67/216 (31.02%), Postives = 113/216 (52.31%), Query Frame = 0


Query: 47  SYWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQA 106
           SY       I+  L   I  ++P +++E + + + +  +    A+C+AACELVGG    A
Sbjct: 81  SYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMA 140

Query: 107 MAAATALQLIYAATYTREYPPL-----TARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFE 166
           M AA A+++I+  +   +  P        RG     +   V+G ++ +L G  +    FE
Sbjct: 141 MPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHI---VFGEDVAVLAGDALLAFAFE 200

Query: 167 ILAGSCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKEL-EEVTAAVETE--EVIEMTE 226
            +A S       S R+ R + E+A+A+G+EG + GQ  ++  E ++ V+ E  E I + +
Sbjct: 201 HIAVS--TLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHK 260

Query: 227 GELHARGG-ACGAILGGGNEEEIEKMRKYGRIVGMV 254
                 G    GAILGGG +EE+EK+RKY R +G++
Sbjct: 261 TAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLL 291

[Close]

BLAST of Carg12826 vs. Swiss-Prot
Match: sp|Q9ZU77|GGPP7_ARATH (Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g18620 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.6e-17
Identity = 61/211 (28.91%), Postives = 112/211 (53.08%), Query Frame = 0


Query: 51  AINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAA 110
           A+NE +D      +  ++P +++E + + + +  +     +CIAACELVGG    A+ AA
Sbjct: 65  AVNEALDS----AVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGEESVALPAA 124

Query: 111 TALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCD 170
            A+++I+  +   +  P               +V+G ++ +L G  +    FE LA S  
Sbjct: 125 CAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFEHLATSTA 184

Query: 171 LSESGSERVRRVMAEMARAMGSEGWIGGQFKEL-----EEVTAAVETEEVIEMTE-GELH 230
           +S +   RV R + E+A+A+GS+G + GQ  +L     ++    +E  E I + +   L 
Sbjct: 185 VSPA---RVVRAIGELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLL 244

Query: 231 ARGGACGAILGGGNEEEIEKMRKYGRIVGMV 254
                 GAI+GGG++EE+EK+R++ R +G++
Sbjct: 245 EAATVLGAIVGGGSDEEVEKLRRFARCIGLL 268

[Close]

BLAST of Carg12826 vs. Swiss-Prot
Match: sp|Q9SLG2|GGPP4_ARATH (Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana OX=3702 GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.0e-17
Identity = 74/287 (25.78%), Postives = 137/287 (47.74%), Query Frame = 0


Query: 48  YWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAM 107
           Y  +  E I+  L   I   +P  +++ + + + +  +     +C+AACELVGG    A+
Sbjct: 84  YMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAI 143

Query: 108 AAATALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILAG 167
            AA A+++I+  +  ++  P               +V+G ++ +L+G  +  + FE L  
Sbjct: 144 QAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLT- 203

Query: 168 SCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKE-----LEEVTAAVETEEVIEMTE-G 227
             D+S   S+++ R + E+A+++G++G + GQ K+     LE+    +E  E I + + G
Sbjct: 204 EADVS---SKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTG 263

Query: 228 ELHARGGACGAILGGGNEEEIEKMRKYGRIVGMV------------------KGLSKKVF 287
            L       GA++GGG E+EIEK+R + R +G++                  K   K   
Sbjct: 264 SLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKV 323

Query: 288 GGKEN-------ERKREKINELKALAFKELEGFKGEKVDQMCNFFDF 302
            GK         E+ +E + +LK  A + L+GF  +KV  +    +F
Sbjct: 324 AGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNF 366

[Close]

BLAST of Carg12826 vs. Swiss-Prot
Match: sp|P34802|GGPP1_ARATH (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 2.6e-17
Identity = 60/215 (27.91%), Postives = 108/215 (50.23%), Query Frame = 0


Query: 47  SYWAAINEDIDDHLRRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQA 106
           SY     E ++  L   +  ++P +++E + + + +  +     +CIAACELVGG    A
Sbjct: 78  SYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTA 137

Query: 107 MAAATALQLIYAATYTREYPPLTARGS--SNAAVVDRVYGPNIQLLTGVGIAPIGFEILA 166
           M AA A+++I+  +   +  P               +V+G ++ +L G  +    FE LA
Sbjct: 138 MPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLA 197

Query: 167 GSCDLSESGSERVRRVMAEMARAMGSEGWIGGQFKE-----LEEVTAAVETEEVIEMTE- 226
            +         RV R + E+A+A+G+EG + GQ  +     L+     +E  E I + + 
Sbjct: 198 SATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKT 257

Query: 227 GELHARGGACGAILGGGNEEEIEKMRKYGRIVGMV 254
             L       GAI+GGG+++EIE++RK+ R +G++
Sbjct: 258 AALLEASAVLGAIVGGGSDDEIERLRKFARCIGLL 292

[Close]

BLAST of Carg12826 vs. TrEMBL
Match: tr|A0A0A0K8P9|A0A0A0K8P9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G211090 PE=4 SV=1)

HSP 1 Score: 429.1 bits (1102), Expect = 8.3e-117
Identity = 226/301 (75.08%), Postives = 247/301 (82.06%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQL  N + PKF  +N L P  Y R P R+  VMSQITPSYWAAINEDI+DHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNSLPPMPYVRLPPRSAAVMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVI  KDP  VYEPL HF+FSAPRNSA A+CIAACELVGG RDQAMAAATA+QLIYAAT
Sbjct: 61  RRVIPVKDPVAVYEPLGHFIFSAPRNSAPALCIAACELVGGHRDQAMAAATAIQLIYAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
            T EYPPLTARG   A+VVDRVYG N+QL+TG GI P+GFEILA SCD SE GSERVRRV
Sbjct: 121 CTHEYPPLTARG-KRASVVDRVYGSNVQLMTGDGITPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M E+ARAMG+EGWIGGQF+ LEE       EEVIE TEG LHA GGACGAI+GGGNEEEI
Sbjct: 181 MVEVARAMGTEGWIGGQFRGLEE---EATVEEVIEKTEGGLHACGGACGAIMGGGNEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNFFD 300
           EKMRKYG++VG+VKGL++ VFGGKENERKREKI ELK LAFKELEGF GE V Q+  F D
Sbjct: 241 EKMRKYGKLVGIVKGLTQIVFGGKENERKREKIEELKVLAFKELEGFNGEMVPQIYGFLD 297

Query: 301 F 302
           F
Sbjct: 301 F 297

[Close]

BLAST of Carg12826 vs. TrEMBL
Match: tr|A0A1S4DWU7|A0A1S4DWU7_CUCME (heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC107990910 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 6.4e-93
Identity = 186/271 (68.63%), Postives = 216/271 (79.70%), Query Frame = 0


Query: 1   MAISLNLLQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHL 60
           MAISLNLLQL  N + PKF  +N + PA Y R P R+TV MSQITPSYWAAINEDI+DHL
Sbjct: 1   MAISLNLLQLQPNLARPKFFQTNLVPPAPYVRPPPRSTVFMSQITPSYWAAINEDIEDHL 60

Query: 61  RRVIIAKDPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAAT 120
           RRVI  KDP  VYEPL HF+ SAPRNSA+A+CIAACELVGG RDQAMAAATA+QLI+AAT
Sbjct: 61  RRVIPVKDPLAVYEPLGHFILSAPRNSASALCIAACELVGGHRDQAMAAATAIQLIHAAT 120

Query: 121 YTREYPPLTARGSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRV 180
            T EYPPLTA G + AAVV+RVY P+IQL+TG GIAP+GFEILA SCD SE GSERVRRV
Sbjct: 121 CTHEYPPLTASG-TRAAVVERVYKPSIQLMTGDGIAPMGFEILAESCDWSERGSERVRRV 180

Query: 181 MAEMARAMGSEGWIGGQFKELEEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 240
           M E++RAMG+EGWIGGQF+ L+E       EEVIE  EG LHA GGACGAI+GGGNEEEI
Sbjct: 181 MVEVSRAMGTEGWIGGQFRGLDE---EATVEEVIEKREGGLHACGGACGAIMGGGNEEEI 240

Query: 241 EKMRKYGRIVGMVKGLSKKVFGGKENERKRE 272
           EKMRKYG+++       ++ +  +  ER++E
Sbjct: 241 EKMRKYGKLI------EERRWRNRRQERRKE 261

[Close]

BLAST of Carg12826 vs. TrEMBL
Match: tr|A0A2N9F8D7|A0A2N9F8D7_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11152 PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 6.9e-63
Identity = 137/298 (45.97%), Postives = 200/298 (67.11%), Query Frame = 0


Query: 9   QLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHLRRVIIAKD 68
           +L+GN +      S+ +RP++    P R+ ++      SYWA++N +I+ HL++ I  + 
Sbjct: 7   RLNGNQTFHILSRSSAVRPSL----PHRSMMITMSQNQSYWASVNSEIEAHLKQAIPLRP 66

Query: 69  PPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAATYTREYPPL 128
           P +V+EP+ H VF+AP+N+A A+C+AACELVGG RDQAMAAA+AL L++AA++T E+ PL
Sbjct: 67  PLQVFEPMHHLVFAAPQNTAPALCLAACELVGGHRDQAMAAASALHLMHAASFTHEHLPL 126

Query: 129 TAR-GSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRVMAEMARA 188
           T R    +  V+   YGPNI+LL G  I P GFE+LA S D +++ S+R+ RV  E+ RA
Sbjct: 127 TDRPRPKSRPVIHHAYGPNIELLLGDAIIPFGFELLARSDDPAQNNSDRILRVTIEITRA 186

Query: 189 MGSEGWIGGQFKEL-------EEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEEI 248
           MGS+G + GQ+ EL       EE+      E+V +  EG LHA G ACGAILGGG+EEEI
Sbjct: 187 MGSQGMVEGQYYELECPQSDGEELCDVGWIEQVCKKKEGGLHACGAACGAILGGGSEEEI 246

Query: 249 EKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKVDQMCNF 299
           EK+R++G  VGM++G+      G++ +  +E + EL+ LA KELE FKG KV+ + +F
Sbjct: 247 EKLRRFGLYVGMIQGMLHG--AGRKEKGLKEVVEELRNLALKELEEFKGRKVEAISSF 298

[Close]

BLAST of Carg12826 vs. TrEMBL
Match: tr|A0A223HEC2|A0A223HEC2_CAMSI (Geranylgeranyl diphosphate synthase OS=Camellia sinensis OX=4442 GN=GGPS3 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.7e-59
Identity = 136/291 (46.74%), Postives = 184/291 (63.23%), Query Frame = 0


Query: 12  GNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHLRRVIIAKDPPE 71
           G  SLP    SN  RP+           +M+Q  P YWA+I  DI+ HL+  I  + P  
Sbjct: 10  GKSSLPSLSKSNHSRPSSLSCYRPMMITMMAQSQP-YWASIESDIEVHLKNAIHVRPPVT 69

Query: 72  VYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAATYTREYPPLTAR 131
           V++P+   VF+AP+  A+A+C+AACELVGG RD+AM AA+A+ L++AA YT E+ PLT R
Sbjct: 70  VFKPMHCLVFAAPKTKASALCVAACELVGGDRDRAMDAASAIHLMHAAAYTHEHLPLTDR 129

Query: 132 GSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRVMAEMARAMGSE 191
             S   ++   YGPNI+LLTG GI P GFE+LA S D ++  S R+ RV+ E+ RA+GS 
Sbjct: 130 PISK-PMIHHTYGPNIELLTGDGIVPFGFELLARSVDPAQKNSGRILRVIIEITRAIGSL 189

Query: 192 GWIGGQFKELEEVTAAVE--------TEEVIEMTEGELHARGGACGAILGGGNEEEIEKM 251
           G + G++ E+    +  E         E V +   GE+HA G ACGAILGGG+EEEIEK+
Sbjct: 190 GVVDGRYTEIRGTQSNGEELRDEDTWMEHVCKKKVGEMHACGAACGAILGGGSEEEIEKL 249

Query: 252 RKYGRIVGMVKGLSKKVFG-GKENERKREKINELKALAFKELEGFKGEKVD 294
           RKYG  VGM++G+   V G G++ ER+ E +  LK LA KELE F  +KVD
Sbjct: 250 RKYGLHVGMIQGMMMMVNGLGRKEEREMEVVERLKVLALKELESFDAKKVD 298

[Close]

BLAST of Carg12826 vs. TrEMBL
Match: tr|A0A2P4IDB5|A0A2P4IDB5_QUESU (Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_18775 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.9e-59
Identity = 137/293 (46.76%), Postives = 188/293 (64.16%), Query Frame = 0


Query: 8   LQLHGNPSLPKFPNSNWLRPAVYFRAPARATVVMSQITPSYWAAINEDIDDHLRRVIIAK 67
           L L+GN +      S+  R +     P R  +V      SYWA+IN DI+ HL++ I  +
Sbjct: 6   LHLNGNQTFHILSRSSVTRASF----PHRTMMVTMSQNQSYWASINADIESHLKQAIPLR 65

Query: 68  DPPEVYEPLSHFVFSAPRNSAAAMCIAACELVGGRRDQAMAAATALQLIYAATYTREYPP 127
            P +V+EP+ H VF+AP+N A A+CIAACELVGG RDQAMAAA+ L+L+ AA++T E  P
Sbjct: 66  PPLQVFEPMHHLVFAAPQNPAPALCIAACELVGGHRDQAMAAASTLRLMQAASFTHEQLP 125

Query: 128 LTAR-GSSNAAVVDRVYGPNIQLLTGVGIAPIGFEILAGSCDLSESGSERVRRVMAEMAR 187
           LT R    +   +   YGPNI+LL G G+ P GFE+LA S D +++ S+R+ RV  E+AR
Sbjct: 126 LTDRPRPKSRPTIHHAYGPNIELLLGDGMMPFGFELLARSDDPAQNNSDRILRVTIEIAR 185

Query: 188 AMGSEGWIGGQFKEL-------EEVTAAVETEEVIEMTEGELHARGGACGAILGGGNEEE 247
           A+GS+G + GQ+ EL       EE+      E+V +  EGELHA G ACGAILGGG+EEE
Sbjct: 186 AVGSQGMVEGQYYELECPQSEGEELCDIGWIEQVCKKKEGELHACGAACGAILGGGSEEE 245

Query: 248 IEKMRKYGRIVGMVKGLSKKVFGGKENERKREKINELKALAFKELEGFKGEKV 293
           IEK+R++G  VG ++G+      GK  +   + + EL+ LA KELE FKG K+
Sbjct: 246 IEKLRRFGLYVGTIQGMLHG--AGKLEKGLMKVVEELRNLALKELEEFKGGKL 292

The following BLAST results are available for this feature:

BLAST of Carg12826 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023536167.1	9.2e-160	96.38	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_022975728.1	5.0e-158	94.08	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
XP_004139865.1	1.3e-116	75.08	PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, ch...	[more]
XP_016900454.1	9.7e-93	68.63	PREDICTED: heterodimeric geranylgeranyl pyrophosphate synthase small subunit, ch...	[more]
XP_023888195.1	6.3e-60	46.49	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]

BLAST of Carg12826 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G38460.1	8.9e-24	28.04	geranylgeranyl reductase	[more]
AT2G18620.1	8.6e-19	28.91	Terpenoid synthases superfamily protein	[more]
AT2G18640.1	1.1e-18	25.78	geranylgeranyl pyrophosphate synthase 4	[more]
AT4G36810.1	1.5e-18	27.91	geranylgeranyl pyrophosphate synthase 1	[more]
AT2G23800.1	1.9e-18	27.57	geranylgeranyl pyrophosphate synthase 2	[more]

BLAST of Carg12826 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39108\|GGR_ARATH	1.6e-22	28.04	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
sp\|Q94ID7\|GGPPS_HEVBR	1.1e-18	31.02	Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=39...	[more]
sp\|Q9ZU77\|GGPP7_ARATH	1.6e-17	28.91	Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Arabidopsis thaliana O...	[more]
sp\|Q9SLG2\|GGPP4_ARATH	2.0e-17	25.78	Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana OX=3702 GN=GGPP4...	[more]
sp\|P34802\|GGPP1_ARATH	2.6e-17	27.91	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplast...	[more]

BLAST of Carg12826 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K8P9\|A0A0A0K8P9_CUCSA	8.3e-117	75.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G211090 PE=4 SV=1	[more]
tr\|A0A1S4DWU7\|A0A1S4DWU7_CUCME	6.4e-93	68.63	heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]
tr\|A0A2N9F8D7\|A0A2N9F8D7_FAGSY	6.9e-63	45.97	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11152 PE=3 SV=1	[more]
tr\|A0A223HEC2\|A0A223HEC2_CAMSI	2.7e-59	46.74	Geranylgeranyl diphosphate synthase OS=Camellia sinensis OX=4442 GN=GGPS3 PE=2 S...	[more]
tr\|A0A2P4IDB5\|A0A2P4IDB5_QUESU	7.9e-59	46.76	Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008949	Isoprenoid_synthase_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12826-RA	Carg12826-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	G3DSA:1.10.600.10		coord: 41..303 e-value: 2.7E-39 score: 136.7
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	SSF48576	Terpenoid synthases	coord: 47..252
None	No IPR available	PANTHER	PTHR43281	FAMILY NOT NAMED	coord: 12..299
None	No IPR available	PANTHER	PTHR43281:SF6	SUBFAMILY NOT NAMED	coord: 12..299

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12826	Cla016321	Watermelon (97103) v1	carwmB0904
Carg12826	Csa7G211090	Cucumber (Chinese Long) v2	carcuB0922
Carg12826	MELO3C013157	Melon (DHL92) v3.5.1	carmeB0890
Carg12826	ClCG09G010850	Watermelon (Charleston Gray)	carwcgB0879
Carg12826	CSPI07G09860	Wild cucumber (PI 183967)	carcpiB0943
Carg12826	Cucsa.007290	Cucumber (Gy14) v1	carcgyB1021
Carg12826	CmaCh09G009570	Cucurbita maxima (Rimu)	carcmaB1240
Carg12826	CmoCh09G009550	Cucurbita moschata (Rifu)	carcmoB1211
Carg12826	Lsi02G018990	Bottle gourd (USVL1VR-Ls)	carlsiB823
Carg12826	Cp4.1LG06g08820	Cucurbita pepo (Zucchini)	carcpeB1255
Carg12826	CsGy7G009350	Cucumber (Gy14) v2	carcgybB0893
Carg12826	MELO3C013157.2	Melon (DHL92) v3.6.1	carmedB0897
Carg12826	CsaV3_7G021880	Cucumber (Chinese Long) v3	carcucB0944
Carg12826	Cla97C09G173590	Watermelon (97103) v2	carwmbB0950
Carg12826	Bhi09G001387	Wax gourd	carwgoB1048

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12826	Cucumber (Gy14) v2	carcgybB0896
Carg12826	Cucurbita maxima (Rimu)	carcmaB1245
Carg12826	Cucurbita moschata (Rifu)	carcmoB1215
Carg12826	Cucurbita pepo (Zucchini)	carcpeB1253
Carg12826	Cucurbita pepo (Zucchini)	carcpeB1254
Carg12826	Wild cucumber (PI 183967)	carcpiB0942
Carg12826	Cucumber (Chinese Long) v2	carcuB0921
Carg12826	Cucumber (Chinese Long) v3	carcucB0943
Carg12826	Cucumber (Chinese Long) v3	carcucB0946
Carg12826	Watermelon (Charleston Gray)	carwcgB0881
Carg12826	Watermelon (97103) v2	carwmbB0944