Carg11475 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11475
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	30S ribosomal protein S11, chloroplastic
Location	Cucurbita_argyrosperma_scaffold_083 : 111267 .. 115890 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGAAAAACTTAGAGTTGAGGTTTTTGTACTGTGCGAAACGGATGATGGTAATTGCTAAAACTCCAAACTCATGACAGGAAGTACAGAAAGACGCCATGATTATCGGGGAATTCATGAATTTCAAGATTTCGGTGCTTGAATTGGGACCCAACCACATTTGATTCTGTGTTTGATGAAATCGAAATCAATGTGTGCGCAATTCAAGGCACTGAGAAACTATAACACTGCAGCTCGTCTTGAAGGACACTCCACCACCCTCCACTATTTCCTTGACGCTTTTGCTAGTCAAATTTAGGTCCAATTACACCAAATATTTTTTCAATATGATAATTTAGGGATTGAATGGAAAAATTACAATTTTTCCTTTTCTTCCGTAGTTGATCCACTCTTCAATTGGTTAGGTTCATCTCTTACTCGACTTAAATTTATGAGACGATAAAATACGACAAAATTCATGTTCAAGCAAGTTTCAACAATACAATTGTGACTGTTACAGATGTACAGGGTCAAGTAATTTCTTGATCCTCCAATGGTACTTGTGGATTCAAAGGTCCAAGAATAGGGACACCATTTGCCGCTCAAACCGCGCAGGAAATGCTATTCGGGCTCTAGCAAATCAAGATATGCAACAAACAGAAGTCATGATAAAGGGTCCTAGTCTCGGAAGAGATGCAGTGTTAAGAGCTATTCAGACACAGATAATAAAACAAAAAAAAGGGTCAAAAGTGATAGCGGTTAGGATACACTATATTAACGACTAAAATGTCATAAGCGATTTGAATATTAAACTAAGCATAGCGGTTAATGGTTAAGAACTATATAAACAAGTAACCGATTTGTGAAACGACGAGTCTTTATCACAAATCTCTTTTGTTTTCTTTATGTACAAGAATAAATCTTAGCAATAAACAAACACAAATCTCCTAAAAGATGCCATTTTTTCTTTGGGTTTCTACATGAACACACTTTTTTGGGCATCACCATTGATATGAGCCATTGATATTGAGCAATTGATTCCTTTTAATCACTGGCCTTTCCAAAACTTCTTGGAAATGGAATAACATCTTTGATGTCAGTGAGACCAGTAGTAAACAGGAGGAAACGATCGAATGCCAAACTGAAACCGGAGTGCTTCACTGCTCCATGCCTATGGATCTCCAAGTACCACTCGTACTGCTCCCTTGGCAGCCCCATCTCCCCCATCCTGCCAACAACCATATTAAAACAGATATCAATAACTCCCATTTTCTTTCGTGAGCGTTTAGAAAACTTTCGGAGTGTCGCAAAACTAGTAAAATTAGAACATGTGGGTCGTGTGTAGTGAAGTACTACACATCCAATTTTGTCCAGACTGGAAACTACCTCTATCATAGTTTTAACGATTTATACTCAAGTCATGTGCTATTTTTCAAGTAAAGACAAGGCACCCTTGTATGGCTGACGACGACATTGCAAGTAAAGACGATGACACATGTATAGTAAAATATCATACCTTCTCATCAATACATCTAAACGCTCCTCCTTTTGGCTGCCAGAAATTACTACTCCACCCTACAAACAGTTGGGTGCCAGTTTAAGAAACAATTTTTCATTCAATACAGGATGATCCAACCAAAAATAAATACTCCCAAGAGTCGATATACATGCCCATGTGCTAACCTTTGGAAGAACTACATCAAATGCCGCCACAGTTTTCCCATCATCATTCAGGCGCACATTAAATGGCTTGGTTCCTTCTGGGTAGTTGTATACTATCACAGGCTTTTTATAGATGGTATCAGCCAGATAACTGTTTCATGTAAAATGAAGAACAAAATGAAAAATAAAGAACTCATTTTGCTTATGGACTGTAATAGCACATTTTGCATACCTGAGATGATCAGCAGTTAAAGCAGCACCAAATTTAAGGCTCTTCAAGTGTTGATGTTTTTGATCGGGTGTTGCCTGACAATGAAGATTTTGTTTTTCCTTTCAAGATTCATGTGGGCAGGGGTAGAAATGAAAAACTGAGTCAAATGATACAAGTGTAGATAATCAAGATTTCACCTTTTCCAGACTTTCTATTGCCGCAGTGTAAGAGACCTTCTCGAACGAACATGATATAAACGATTCAAGGCGTTGAATGCTTGTCTTGTCGATTCGTTTTTCAACAAATTTCATATCATCCACACAGTGGTCCAATACCCATTTGGAGAGGAATTTTACAAGGTCATCAGCACAGTTCATGGCATCCTAGAGTCCCAATGATGATACAAAATGTAAGTTAAAAGATGGACTTCTTCATTCAGTGGTGCAATGATATTATAAACAACCACTAATCACAGAAAATAACATTAAGATTTTAATGGCTAAATCAACATGGAAACTTAAATCCATAATTTAGATGTCAAATAATAAGCAATCTGAAGGAATAAGTAAAAAGATCATAAATTCGTACCTCGAGTTCAGCAAAAGCAATTTCAACTTCCACCATCGACATTTCAGCTGCATGTTTTGCAGACTCGATTTTATCTGCTCGAAACCTCGGTCCACACGAATAAACATTGCCAAGGGCGCACGCATAGGTCTCCAAATGGAGTTGTCCAGAAACTGTTAGATAAGTTTCTTGTGGGAAGAAATTTTCATGGAAGTTAACTTTATCTTTGCTCGATTCGGGTTTTGATTTTCCTCTGGCTTCTAATTGTAATGCCAGTTCATTTGTTCTCTTTAAATCCTGAACTGCAGCAGCTAAGGCTTCTTTGTTGCCTTCGCTTCTCTCAAGCTCTTTGACGAGATTGCTTTTCTCCATTACAGCAGCCTTAAGAGTTTCAAGACTTACACCATCAGTTTCTTTATCTTCTGTTGGTTCTACTTTCTTACCTGCTAATTTAGTCGCAAGTGTTGTAACGTGGAACTTTTCACTGAATCCCTCATTGTCTGTGGTCGTGATAGCGGGTAATTGCACGTAAAGAAAGCTATGATTTTGGAAGAACGTGTGAGTTGCAAAAGTCAAGGCATTACGAATTCTCATAACAGATGCTACCTGCATAAAGTAAAGAGTACCAATGAAGATCAAGATCCAATAGTTCTGATCAAATGTACAAAACTCTCTTCTCACGATTTGTCACCCGAGCTCTGTTGAGGATTTTTGGGAGGGAGTCCCACATTGGCTAATTAAAGGGATGATCGTGGGTTTATAAGTAAGGAATACATCTCCACTGGCAATGTATAATTGAAGCTTGTGCATATTACCGTTGTAATAGCCCAAGTCCACCGCTAGCAGATATTGTCCTCTTTCGGCTTTCCCTTTCAGGCTTCCTCTCAAGGTTTTTAAAACGCGTCTGCTAAAAAGAGGTTTCCACGCTCTTATAAATAATGTTTCGTTCCCCTCTCTAACCGATGTGAGATCTCACAATCCACCCCCTTCGAGGCCCTTCGTCCTCGCCGGCACTCGTTCCTCTCTCCAATTGATGTGGGATCTCACAATTCACCCCCTTCGGTGCCCAGTGTCCTTACTGGCACACGGCCTAGTGTCCACCCCCTTTGAGGCAACGTCCTCGCTCGCACACCGCTCAGTGTTTGGCTCTAGTACCAAAACAGCCCAAGCCCACCGCTAGCAGATATTGCCTTCTTTGGGCTTTTCCTTTCCGGTTTCCCCTCAAGGTTTTTAAAATGCATATGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCATTTCCCTCTCCAACTGATGTCGATCTTAAGACTAATAGGCTCGTTTCCCTCTCCCACCGATGTTGATCTTAAGACTAATAGGCGCTCTGATGATAGGCATGCAGACAGAACCAAAAAACAGGAACTAAATGCAATGTATAGTTGAAGTTTGTGCATATTACCGTAGAAGTTCGAGGACGAAAATAAGAAAATTTCCTCAAAACATCCATTGGAATCCTTTTCTGTGATAATGGATACTTTTCCTTTTCAACCTTCCCTACATGAAGGATTTTCTCCACTTCAAGCCGAACAGTATGTTTCCCAGGTACTGATACCCGCTTCAATATGCCTTCCACCAAAATGCAAGTTCCCGATGGCATCAGATGGATAGGCTGATGTAACGAGGACTCCACAACAACCTGAAAGTTTCTTAGTTAGTCAAGTCCTGTACGCATAACAAAATAACAAACAGTTGGCGTGCATAAATTAGAGGAACCTGAAGGTCTGCAACACAAGAGCCATCATTAACGACCAGAAAAGCAGTGGAAGGAAGCGGCGGCTGATGAACATTCGTCTCCAACTTCTCACCGCCGTGTAAATTATTTCCATACAGCATCCTAAGCAAAGACCTAACAATCGGAATCCGCGACTGTACAATCTCAATACAGCTCGCATCCTTAGCCTTCAGCGGCAGGACATCACCCGCCGCCTTAACACTGGCATCGACCAGCGGCCGAACAGCATCTCCAATGACTTCCTTGGAGGACTTCACCCATCCTCCGACCACCAATTTCCGATCCACAAACCCCAGACCGCCATCGCCACTCTCGAACACAGTTTTGAGAAGAACCCGCTTGGAGTACTTGGAGAAGGTCACCGGGGTGAAGACTGTAGGTTGTTGGGCAGCCATTGAAGAGTGTAGAGAAATGGGGGATTGA

mRNA sequence

ATGAAGAAGGAAAAACTTAGAGTTGAGGTTTTTGTACTGTGCGAAACGGATGATGGGTCAAGTAATTTCTTGATCCTCCAATGGTACTTGTGGATTCAAAGGTCCAAGAATAGGGACACCATTTGCCGCTCAAACCGCGCAGGAAATGCTATTCGGGCTCTAGCAAATCAAGATATGCAACAAACAGAAGTCATGATAAAGGGTCCTAGTCTCGGAAGAGATGCAGTGTTAAGAGCTATTCAGACACAGATAATAAAACAAAAAAAAGGGTCAAAAGTGATAGCGAGGAACCTGAAGGTCTGCAACACAAGAGCCATCATTAACGACCAGAAAAGCAGTGGAAGGAAGCGGCGGCTGATGAACATTCGTCTCCAACTTCTCACCGCCGTCATCCTAAGCAAAGACCTAACAATCGGAATCCGCGACTGTACAATCTCAATACAGCTCGCATCCTTAGCCTTCAGCGGCAGGACATCACCCGCCGCCTTAACACTGGCATCGACCAGCGGCCGAACAGCATCTCCAATGACTTCCTTGGAGGACTTCACCCATCCTCCGACCACCAATTTCCGATCCACAAACCCCAGACCGCCATCGCCACTCTCGAACACAGTTTTGAGAAGAACCCGCTTGGAGTACTTGGAGAAGGTCACCGGGGTGAAGACTGTAGGTTGTTGGGCAGCCATTGAAGAGTGTAGAGAAATGGGGGATTGA

Coding sequence (CDS)

ATGAAGAAGGAAAAACTTAGAGTTGAGGTTTTTGTACTGTGCGAAACGGATGATGGGTCAAGTAATTTCTTGATCCTCCAATGGTACTTGTGGATTCAAAGGTCCAAGAATAGGGACACCATTTGCCGCTCAAACCGCGCAGGAAATGCTATTCGGGCTCTAGCAAATCAAGATATGCAACAAACAGAAGTCATGATAAAGGGTCCTAGTCTCGGAAGAGATGCAGTGTTAAGAGCTATTCAGACACAGATAATAAAACAAAAAAAAGGGTCAAAAGTGATAGCGAGGAACCTGAAGGTCTGCAACACAAGAGCCATCATTAACGACCAGAAAAGCAGTGGAAGGAAGCGGCGGCTGATGAACATTCGTCTCCAACTTCTCACCGCCGTCATCCTAAGCAAAGACCTAACAATCGGAATCCGCGACTGTACAATCTCAATACAGCTCGCATCCTTAGCCTTCAGCGGCAGGACATCACCCGCCGCCTTAACACTGGCATCGACCAGCGGCCGAACAGCATCTCCAATGACTTCCTTGGAGGACTTCACCCATCCTCCGACCACCAATTTCCGATCCACAAACCCCAGACCGCCATCGCCACTCTCGAACACAGTTTTGAGAAGAACCCGCTTGGAGTACTTGGAGAAGGTCACCGGGGTGAAGACTGTAGGTTGTTGGGCAGCCATTGAAGAGTGTAGAGAAATGGGGGATTGA

Protein sequence

MKKEKLRVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQTQIIKQKKGSKVIARNLKVCNTRAIINDQKSSGRKRRLMNIRLQLLTAVILSKDLTIGIRDCTISIQLASLAFSGRTSPAALTLASTSGRTASPMTSLEDFTHPPTTNFRSTNPRPPSPLSNTVLRRTRLEYLEKVTGVKTVGCWAAIEECREMGD

Homology

[Close]

BLAST of Carg11475 vs. NCBI nr
Match: PHT28657.1 (50S ribosomal protein L14, chloroplastic [Capsicum baccatum])

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-08
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 19  GSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLR 78
           G+S+FL+L+WY WI+ ++          A NAIR + +Q MQ+ EVMIKGPSL RD  LR
Sbjct: 142 GTSSFLVLRWYFWIKGTRRGTPFAAQTAAANAIRTVVDQGMQREEVMIKGPSLERDGALR 201

Query: 79  AI 81
           AI
Sbjct: 202 AI 203

[Close]

BLAST of Carg11475 vs. NCBI nr
Match: PLY89337.1 (hypothetical protein LSAT_5X50421 [Lactuca sativa])

HSP 1 Score: 60.5 bits (145), Expect = 9.1e-06
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 7   RVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMI 66
           +V +  LC    G+S FL+L  Y   + ++           GNAIRA+ +Q MQ+ EVMI
Sbjct: 99  QVSIIPLC---TGASGFLVLCRYSGFRGTRRGTPFAAQTAIGNAIRAVVDQGMQRAEVMI 158

Query: 67  KGPSLGRDAVLRAIQ 82
           KGP LGRD  LRAI+
Sbjct: 159 KGPGLGRDTTLRAIR 170

[Close]

BLAST of Carg11475 vs. NCBI nr
Match: YP_009333699.1 (ribosomal protein S11 (chloroplast) [Murraya koenigii] >AOZ20653.1 ribosomal protein S11 (chloroplast) [Murraya koenigii])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 12  VLCETDDGSSNFLILQWYLWIQRSKNRDT-ICRSNRAGNAIRALANQDMQQTEVMIKGPS 71
           V+C +  G+  F          R   R T       AGNAIRA+A+Q MQ+ EVMIKGP 
Sbjct: 50  VICWSSAGTCGF----------RGTRRGTPFAAQTAAGNAIRAVADQGMQRAEVMIKGPG 109

Query: 72  LGRDAVLRAIQ 82
           LGRDA LRAI+
Sbjct: 110 LGRDAALRAIR 110

[Close]

BLAST of Carg11475 vs. NCBI nr
Match: YP_009503971.1 (ribosomal protein S11 (chloroplast) [Xylocarpus moluccensis] >YP_009503885.1 ribosomal protein S11 (chloroplast) [Xylocarpus rumphii] >AXA07345.1 ribosomal protein S11 (chloroplast) [Xylocarpus rumphii] >AXA07431.1 ribosomal protein S11 (chloroplast) [Xylocarpus moluccensis])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 25  ILQWY----LWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAI 82
           ++ WY       + ++          AGNAIRA+A+Q MQ+ EVMIKGP LGRDA LRAI
Sbjct: 50  VISWYSAGTCGFRGTRRGTPFAAQTAAGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAI 109

[Close]

BLAST of Carg11475 vs. NCBI nr
Match: YP_009512216.1 (ribosomal protein S11 (chloroplast) [Stylosanthes hamata] >YP_009512297.1 ribosomal protein S11 (chloroplast) [Stylosanthes scabra] >YP_009512378.1 ribosomal protein S11 (chloroplast) [Stylosanthes viscosa] >AXJ91646.1 ribosomal protein S11 (chloroplast) [Stylosanthes hamata] >AXJ91727.1 ribosomal protein S11 (chloroplast) [Stylosanthes scabra] >AXJ91808.1 ribosomal protein S11 (chloroplast) [Stylosanthes viscosa])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 47  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ 82
           AGNAIR +ANQ MQ+ EVMIKGP LGRDA LRAI+
Sbjct: 76  AGNAIRTVANQGMQRAEVMIKGPGLGRDAALRAIR 110

[Close]

BLAST of Carg11475 vs. TAIR10
Match: ATCG00750.1 (ribosomal protein S11)

HSP 1 Score: 52.0 bits (123), Expect = 5.9e-07
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 47  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ 82
           AGNAIRA+ +Q MQ+ EV IKGP LGRDA LRAI+
Sbjct: 76  AGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIR 110

[Close]

BLAST of Carg11475 vs. Swiss-Prot
Match: sp|Q09ME4|RR11_CITSI (30S ribosomal protein S11, chloroplastic OS=Citrus sinensis OX=2711 GN=rps11 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.4e-07
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 47  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ 82
           AGNAIRA+A+Q MQ+ EVMIKGP LGRDA LRAI+
Sbjct: 76  AGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIR 110

[Close]

BLAST of Carg11475 vs. Swiss-Prot
Match: sp|B1A968|RR11_CARPA (30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 47  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ 82
           AGNAIRA+ +Q MQ+ EVMIKGP LGRDA LRAI+
Sbjct: 76  AGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIR 110

[Close]

BLAST of Carg11475 vs. Swiss-Prot
Match: sp|A0ZZ68|RR11_GOSBA (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 47  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ 82
           AGNAIRA+ +Q MQ+ EVMIKGP LGRDA LRAI+
Sbjct: 76  AGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIR 110

[Close]

BLAST of Carg11475 vs. Swiss-Prot
Match: sp|Q2L937|RR11_GOSHI (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 47  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ 82
           AGNAIRA+ +Q MQ+ EVMIKGP LGRDA LRAI+
Sbjct: 76  AGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIR 110

[Close]

BLAST of Carg11475 vs. Swiss-Prot
Match: sp|Q9BBQ3|RR11_LOTJA (30S ribosomal protein S11, chloroplastic OS=Lotus japonicus OX=34305 GN=rps11 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 26/35 (74.29%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 47  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ 82
           AGNAIR +A+Q MQ+ EVMIKGP LGRDA LRAI+
Sbjct: 76  AGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIR 110

[Close]

BLAST of Carg11475 vs. TrEMBL
Match: tr|A0A2G2V6S4|A0A2G2V6S4_CAPBA (50S ribosomal protein L14, chloroplastic OS=Capsicum baccatum OX=33114 GN=CQW23_31747 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.0e-08
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 19  GSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMIKGPSLGRDAVLR 78
           G+S+FL+L+WY WI+ ++          A NAIR + +Q MQ+ EVMIKGPSL RD  LR
Sbjct: 142 GTSSFLVLRWYFWIKGTRRGTPFAAQTAAANAIRTVVDQGMQREEVMIKGPSLERDGALR 201

Query: 79  AI 81
           AI
Sbjct: 202 AI 203

[Close]

BLAST of Carg11475 vs. TrEMBL
Match: tr|A0A2J6LPT2|A0A2J6LPT2_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X50421 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.0e-06
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 0


Query: 7   RVEVFVLCETDDGSSNFLILQWYLWIQRSKNRDTICRSNRAGNAIRALANQDMQQTEVMI 66
           +V +  LC    G+S FL+L  Y   + ++           GNAIRA+ +Q MQ+ EVMI
Sbjct: 99  QVSIIPLC---TGASGFLVLCRYSGFRGTRRGTPFAAQTAIGNAIRAVVDQGMQRAEVMI 158

Query: 67  KGPSLGRDAVLRAIQ 82
           KGP LGRD  LRAI+
Sbjct: 159 KGPGLGRDTTLRAIR 170

[Close]

BLAST of Carg11475 vs. TrEMBL
Match: tr|A0A1L2JIY6|A0A1L2JIY6_MURKO (30S ribosomal protein S11, chloroplastic OS=Murraya koenigii OX=159030 GN=rps11 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.7e-05
Identity = 34/71 (47.89%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 12  VLCETDDGSSNFLILQWYLWIQRSKNRDT-ICRSNRAGNAIRALANQDMQQTEVMIKGPS 71
           V+C +  G+  F          R   R T       AGNAIRA+A+Q MQ+ EVMIKGP 
Sbjct: 50  VICWSSAGTCGF----------RGTRRGTPFAAQTAAGNAIRAVADQGMQRAEVMIKGPG 109

Query: 72  LGRDAVLRAIQ 82
           LGRDA LRAI+
Sbjct: 110 LGRDAALRAIR 110

[Close]

BLAST of Carg11475 vs. TrEMBL
Match: tr|A0A0S2IGL1|A0A0S2IGL1_CUCMO (Ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=rps11 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 47  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ 82
           AGNAIRA+A+Q MQ+ EVMIKGP LGRDA LRAI+
Sbjct: 76  AGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIR 110

[Close]

BLAST of Carg11475 vs. TrEMBL
Match: tr|A0A1Z1GAE8|A0A1Z1GAE8_MANIN (30S ribosomal protein S11, chloroplastic OS=Mangifera indica OX=29780 GN=rps11 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 47  AGNAIRALANQDMQQTEVMIKGPSLGRDAVLRAIQ 82
           AGNAIRA+A+Q MQ+ EVMIKGP LGRDA LRAI+
Sbjct: 76  AGNAIRAVADQGMQRAEVMIKGPGLGRDAALRAIR 110

The following BLAST results are available for this feature:

BLAST of Carg11475 vs. NCBI nr


Match Name	E-value	Identity	Description
PHT28657.1	1.5e-08	51.61	50S ribosomal protein L14, chloroplastic [Capsicum baccatum]	[more]
PLY89337.1	9.1e-06	44.00	hypothetical protein LSAT_5X50421 [Lactuca sativa]	[more]
YP_009333699.1	1.3e-04	47.89	ribosomal protein S11 (chloroplast) [Murraya koenigii] >AOZ20653.1 ribosomal pro...	[more]
YP_009503971.1	1.7e-04	47.54	ribosomal protein S11 (chloroplast) [Xylocarpus moluccensis] >YP_009503885.1 rib...	[more]
YP_009512216.1	1.7e-04	77.14	ribosomal protein S11 (chloroplast) [Stylosanthes hamata] >YP_009512297.1 riboso...	[more]

BLAST of Carg11475 vs. TAIR10


Match Name	E-value	Identity	Description
ATCG00750.1	5.9e-07	71.43	ribosomal protein S11	[more]

BLAST of Carg11475 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q09ME4\|RR11_CITSI	7.4e-07	77.14	30S ribosomal protein S11, chloroplastic OS=Citrus sinensis OX=2711 GN=rps11 PE=...	[more]
sp\|B1A968\|RR11_CARPA	2.1e-06	74.29	30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 ...	[more]
sp\|A0ZZ68\|RR11_GOSBA	2.1e-06	74.29	30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1...	[more]
sp\|Q2L937\|RR11_GOSHI	2.1e-06	74.29	30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 ...	[more]
sp\|Q9BBQ3\|RR11_LOTJA	2.1e-06	74.29	30S ribosomal protein S11, chloroplastic OS=Lotus japonicus OX=34305 GN=rps11 PE...	[more]

BLAST of Carg11475 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2G2V6S4\|A0A2G2V6S4_CAPBA	1.0e-08	51.61	50S ribosomal protein L14, chloroplastic OS=Capsicum baccatum OX=33114 GN=CQW23_...	[more]
tr\|A0A2J6LPT2\|A0A2J6LPT2_LACSA	6.0e-06	44.00	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_5X50421 PE=3 SV=1	[more]
tr\|A0A1L2JIY6\|A0A1L2JIY6_MURKO	8.7e-05	47.89	30S ribosomal protein S11, chloroplastic OS=Murraya koenigii OX=159030 GN=rps11 ...	[more]
tr\|A0A0S2IGL1\|A0A0S2IGL1_CUCMO	1.5e-04	77.14	Ribosomal protein S11 OS=Cucurbita moschata OX=3662 GN=rps11 PE=3 SV=1	[more]
tr\|A0A1Z1GAE8\|A0A1Z1GAE8_MANIN	1.5e-04	77.14	30S ribosomal protein S11, chloroplastic OS=Mangifera indica OX=29780 GN=rps11 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR001971	Ribosomal_S11

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11475-RA	Carg11475-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 45..83 e-value: 9.5E-5 score: 22.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..203

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11475	Silver-seed gourd	carcarB009
Carg11475	Cucumber (Gy14) v2	carcgybB0012
Carg11475	Cucumber (Gy14) v1	carcgyB0013
Carg11475	Cucurbita maxima (Rimu)	carcmaB0020
Carg11475	Cucurbita maxima (Rimu)	carcmaB0021
Carg11475	Cucurbita moschata (Rifu)	carcmoB0021
Carg11475	Cucurbita moschata (Rifu)	carcmoB0022
Carg11475	Cucurbita pepo (Zucchini)	carcpeB0019
Carg11475	Cucurbita pepo (Zucchini)	carcpeB0020
Carg11475	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11475	Wild cucumber (PI 183967)	carcpiB0013
Carg11475	Cucumber (Chinese Long) v2	carcuB0013
Carg11475	Cucumber (Chinese Long) v3	carcucB0013
Carg11475	Bottle gourd (USVL1VR-Ls)	carlsiB012
Carg11475	Melon (DHL92) v3.5.1	carmeB0011
Carg11475	Melon (DHL92) v3.6.1	carmedB0012
Carg11475	Watermelon (Charleston Gray)	carwcgB0012
Carg11475	Watermelon (97103) v1	carwmB0014
Carg11475	Watermelon (97103) v2	carwmbB0012
Carg11475	Wax gourd	carwgoB0015