Carg10428 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10428
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin-responsive protein
Location	Cucurbita_argyrosperma_scaffold_098 : 107655 .. 108227 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATGGTTCAGACATGGCCCTCTCAGAAGCTTCAGTGCAATTTCTGATGTACGTCCCCAACTCGATATAAATCTTCTCCTAAGTCTCACTTGGCTCTATCCGAAGTCTCGAGTTCACATAAACATTTGTTTACCACGCCAAATCGTGGGAACAAAAGGGAAATATTACTACAGGCTTCGGAATTTCATCCTGATGAAGCTAAGGTTATTCATCTCTATGCTCCAAAAGAGCCTTTCTCCACTGATGTCTAAAGAACCTAAACACGATAGTTTCGATGAAGAGTTCGATGCAGCAGTTATGGTGCCGAAAGACGTGGAAGAAGGCCATTTTGTGGTATTTGCAGCGGATGGTGATGAGAGAAAGAGGTTTGTCATTAATTTGAAGTTCTTGTCTAACCCTGCATTCTTGAGGCTATTGGAGCTGGCAAAGGAAGAATATGGGTTCCAACAAAAGGGAGCTCTAACAGTCCCTTGTCCGCCTGAAGAACTACAGAAGATTGTAGAAGAAAGAAGAAAACAGAAAACTGGGGAGTGGATTGCATCTAGTGTTCATATCATAACTGGCTACTAG

mRNA sequence

ATGGAATGGTTCAGACATGGCCCTCTCAGAAGCTTCAGTGCAATTTCTGATGTACGTCCCCAACTCGATATAAATCTTCTCCTAAGTCTCACTTGGCTCTATCCGAAGTCTCGAGTTCACATAAACATTTGTTTACCACGCCAAATCGTGGGAACAAAAGGGAAATATTACTACAGGCTTCGGAATTTCATCCTGATGAAGCTAAGGTTATTCATCTCTATGCTCCAAAAGAGCCTTTCTCCACTGATGTCTAAAGAACCTAAACACGATAGTTTCGATGAAGAGTTCGATGCAGCAGTTATGGTGCCGAAAGACGTGGAAGAAGGCCATTTTGTGGTATTTGCAGCGGATGGTGATGAGAGAAAGAGGTTTGTCATTAATTTGAAGTTCTTGTCTAACCCTGCATTCTTGAGGCTATTGGAGCTGGCAAAGGAAGAATATGGGTTCCAACAAAAGGGAGCTCTAACAGTCCCTTGTCCGCCTGAAGAACTACAGAAGATTGTAGAAGAAAGAAGAAAACAGAAAACTGGGGAGTGGATTGCATCTAGTGTTCATATCATAACTGGCTACTAG

Coding sequence (CDS)

ATGGAATGGTTCAGACATGGCCCTCTCAGAAGCTTCAGTGCAATTTCTGATGTACGTCCCCAACTCGATATAAATCTTCTCCTAAGTCTCACTTGGCTCTATCCGAAGTCTCGAGTTCACATAAACATTTGTTTACCACGCCAAATCGTGGGAACAAAAGGGAAATATTACTACAGGCTTCGGAATTTCATCCTGATGAAGCTAAGGTTATTCATCTCTATGCTCCAAAAGAGCCTTTCTCCACTGATGTCTAAAGAACCTAAACACGATAGTTTCGATGAAGAGTTCGATGCAGCAGTTATGGTGCCGAAAGACGTGGAAGAAGGCCATTTTGTGGTATTTGCAGCGGATGGTGATGAGAGAAAGAGGTTTGTCATTAATTTGAAGTTCTTGTCTAACCCTGCATTCTTGAGGCTATTGGAGCTGGCAAAGGAAGAATATGGGTTCCAACAAAAGGGAGCTCTAACAGTCCCTTGTCCGCCTGAAGAACTACAGAAGATTGTAGAAGAAAGAAGAAAACAGAAAACTGGGGAGTGGATTGCATCTAGTGTTCATATCATAACTGGCTACTAG

Protein sequence

MEWFRHGPLRSFSAISDVRPQLDINLLLSLTWLYPKSRVHINICLPRQIVGTKGKYYYRLRNFILMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDERKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGEWIASSVHIITGY

Homology

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BLAST of Carg10428 vs. NCBI nr
Match: XP_022977263.1 (uncharacterized protein LOC111477631 [Cucurbita maxima])

HSP 1 Score: 386.0 bits (990), Expect = 7.6e-104
Identity = 189/190 (99.47%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MEWFRHGPLRSFSAISDVRPQLDINLLLSLTWLYPKSRVHINICLPRQIVGTKGKYYYRL 60
           MEWFRHGPLRSFSAISDVRPQLD+NLLLSLTWLYPKSRVHINICLPRQIVGTKGKYYYRL
Sbjct: 1   MEWFRHGPLRSFSAISDVRPQLDLNLLLSLTWLYPKSRVHINICLPRQIVGTKGKYYYRL 60

Query: 61  RNFILMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDE 120
           RNFILMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDE
Sbjct: 61  RNFILMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDE 120

Query: 121 RKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGEWI 180
           RKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGEWI
Sbjct: 121 RKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGEWI 180

Query: 181 ASSVHIITGY 191
           ASSVHIITGY
Sbjct: 181 ASSVHIITGY 190

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BLAST of Carg10428 vs. NCBI nr
Match: XP_023543955.1 (uncharacterized protein LOC111803675 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 385.2 bits (988), Expect = 1.3e-103
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MEWFRHGPLRSFSAISDVRPQLDINLLLSLTWLYPKSRVHINICLPRQIVGTKGKYYYRL 60
           MEWFRHGPLRSFSAISDVRPQLDINL LSLTWLYPKSRVHINICLPRQIVGTKGKYYYRL
Sbjct: 1   MEWFRHGPLRSFSAISDVRPQLDINLFLSLTWLYPKSRVHINICLPRQIVGTKGKYYYRL 60

Query: 61  RNFILMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDE 120
           RNFILMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDE
Sbjct: 61  RNFILMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDE 120

Query: 121 RKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGEWI 180
           RKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGEWI
Sbjct: 121 RKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGEWI 180

Query: 181 ASSVHIITGY 191
           ASSVHIITGY
Sbjct: 181 ASSVHIITGY 190

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BLAST of Carg10428 vs. NCBI nr
Match: XP_022925647.1 (uncharacterized protein LOC111433002 [Cucurbita moschata])

HSP 1 Score: 375.6 bits (963), Expect = 1.0e-100
Identity = 186/190 (97.89%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MEWFRHGPLRSFSAISDVRPQLDINLLLSLTWLYPKSRVHINICLPRQIVGTKGKYYYRL 60
           MEWFRHGPLRSFSAISDVRPQLDINLLLSLTWLY KSRVHINICLPRQ VGTKGKYYYRL
Sbjct: 1   MEWFRHGPLRSFSAISDVRPQLDINLLLSLTWLYLKSRVHINICLPRQNVGTKGKYYYRL 60

Query: 61  RNFILMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDE 120
           RNFILMKLRLFISMLQKSLSPLMSKEPKHDSFDEEF+AAVMVPKDVEEGHFVVFAADGDE
Sbjct: 61  RNFILMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFNAAVMVPKDVEEGHFVVFAADGDE 120

Query: 121 RKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGEWI 180
           RKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTG WI
Sbjct: 121 RKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGGWI 180

Query: 181 ASSVHIITGY 191
           ASSVHIITGY
Sbjct: 181 ASSVHIITGY 190

[Close]

BLAST of Carg10428 vs. NCBI nr
Match: KGN48185.1 (hypothetical protein Csa_6G446450 [Cucumis sativus])

HSP 1 Score: 215.7 bits (548), Expect = 1.4e-52
Identity = 107/125 (85.60%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 66  MKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDERKRFV 125
           MKLRL I++LQKSLSPL+SKE +H+SF EEF+AA  VPKDVEEGHFVVFA DGDERKRFV
Sbjct: 1   MKLRLVIALLQKSLSPLLSKESRHESFYEEFEAAATVPKDVEEGHFVVFAVDGDERKRFV 60

Query: 126 INLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGEWIASSVH 185
           INL+FLSNP FLRLLELAKEEYGFQQKGALTVPC PEELQKIVEERRKQK GEWIASSVH
Sbjct: 61  INLEFLSNPEFLRLLELAKEEYGFQQKGALTVPCRPEELQKIVEERRKQKNGEWIASSVH 120

Query: 186 IITGY 191
           IIT +
Sbjct: 121 IITSF 125

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BLAST of Carg10428 vs. NCBI nr
Match: XP_024191352.1 (auxin-responsive protein SAUR72-like [Rosa chinensis] >PRQ43605.1 putative small auxin-up RNA [Rosa chinensis])

HSP 1 Score: 137.5 bits (345), Expect = 4.7e-29
Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 66  MKLRLFISMLQKSLSPLMSKEP---KHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDERK 125
           MKLRL I  LQK L  L +K P   +HD FDE+ D A MVP+DV+EG+F VFA  G E K
Sbjct: 1   MKLRLIIEKLQKGLLLLATKGPHDDQHDEFDEDLDVAKMVPEDVKEGYFAVFAVKGKEPK 60

Query: 126 RFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQ 175
           RFVI L+ L+NPAFL+LLE AKEEYGFQQKGAL VPC PE+L KI+E RR++
Sbjct: 61  RFVIKLESLNNPAFLKLLEQAKEEYGFQQKGALEVPCRPEDLHKILENRREK 112

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BLAST of Carg10428 vs. TAIR10
Match: AT3G09870.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 98.2 bits (243), Expect = 5.7e-21
Identity = 50/109 (45.87%), Postives = 72/109 (66.06%), Query Frame = 0


Query: 67  KLRLFISMLQKS--LSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDERKRF 126
           K ++F+  LQ     +    +   +  F+EE +AA M+P DV+EGH  V A  G+  KRF
Sbjct: 4   KFKIFMRKLQICCLFTRFSKRVGNYCEFEEEGNAASMIPSDVKEGHVAVIAVKGERIKRF 63

Query: 127 VINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRK 174
           V+ L+ L+ P FLRLLE A+EE+GFQ +G LT+PC PEE+QKI++  R+
Sbjct: 64  VLELEELNKPEFLRLLEQAREEFGFQPRGPLTIPCQPEEVQKILQGSRE 112

[Close]

BLAST of Carg10428 vs. TAIR10
Match: AT2G28085.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-15
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = 0


Query: 65  LMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADG--DERK 124
           ++KL+  +  L +      +K+P  + +  +      VPKDV+EGHF V A DG  +  +
Sbjct: 19  IVKLKNVVERLVQIKGFSSAKKPCPEEYGRD-----CVPKDVKEGHFAVIAVDGYHEPTQ 78

Query: 125 RFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEER 172
           RFV+ L FL +P F +LLE A+EEYGF   GAL VPC P  L+ I+ E+
Sbjct: 79  RFVVPLMFLEHPMFRKLLEQAEEEYGFYHDGALMVPCRPSHLRMILTEQ 122

[Close]

BLAST of Carg10428 vs. TAIR10
Match: AT5G20810.2 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 63.5 bits (153), Expect = 1.6e-10
Identity = 36/94 (38.30%), Postives = 56/94 (59.57%), Query Frame = 0


Query: 79  LSPLMSK---EPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDERKRFVINLKFLSNPA 138
           +SP ++K   + K+   DEE   +   P DV +G+  V+   G E +RF+I   +LS+  
Sbjct: 49  ISPAINKRLLDVKNGDSDEETCQSPEPPHDVPKGNLAVYV--GPELRRFIIPTSYLSHSL 108

Query: 139 FLRLLELAKEEYGFQQKGALTVPCPPEELQKIVE 170
           F  LLE A+EE+GF Q GALT+PC  E  + +++
Sbjct: 109 FKVLLEKAEEEFGFDQSGALTIPCEVETFKYLLK 140

[Close]

BLAST of Carg10428 vs. TAIR10
Match: AT3G43120.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-10
Identity = 41/105 (39.05%), Postives = 56/105 (53.33%), Query Frame = 0


Query: 79  LSPLMSKE----PKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDERKRFVINLKFLSNP 138
           +SP+++K        DS +E    +   P DV +G+  V+   G E +RF+I   FLS+ 
Sbjct: 48  ISPVINKRLLDLKTCDSDEETTCQSPEPPPDVPKGYLAVYV--GPELRRFIIPTNFLSHS 107

Query: 139 AFLRLLELAKEEYGFQQKGALTVPCPPEE---LQKIVEERRKQKT 177
            F  LLE A+EEYGF   GALT+PC  E    L K +E   K  T
Sbjct: 108 LFKVLLEKAEEEYGFDHSGALTIPCEVETFKYLLKCIENHPKDDT 150

[Close]

BLAST of Carg10428 vs. TAIR10
Match: AT2G37030.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 61.2 bits (147), Expect = 7.8e-10
Identity = 34/87 (39.08%), Postives = 49/87 (56.32%), Query Frame = 0


Query: 74  MLQKSLSPLMSKEPKHDSFDEEF-DAAVMVPKDVEEGHFVVFAADGDERKRFVINLKFLS 133
           M  K + P  S E  ++     F   A ++P+DV +GH VV+   G+E KRFVIN+  L 
Sbjct: 16  MTSKVIIPCASCESCYERICWAFKKEAEVIPRDVPKGHLVVYV--GEEYKRFVININLLK 75

Query: 134 NPAFLRLLELAKEEYGFQQKGALTVPC 160
           +P F  LL+ A++ YGF     L +PC
Sbjct: 76  HPLFQALLDQAQDAYGFSADSRLWIPC 100

[Close]

BLAST of Carg10428 vs. Swiss-Prot
Match: sp|Q9ZUZ3|SAU32_ARATH (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-08
Identity = 28/78 (35.90%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 104 KDVEEGHFVV-FAADGDERKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPE 163
           KDV +G   +   + G+E++RF++ + + ++P F++LL+ A++EYGF QKG +T+PC  E
Sbjct: 22  KDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVE 81

Query: 164 E---LQKIVEERRKQKTG 178
           E   +Q +++  R    G
Sbjct: 82  EFRYVQALIDGERSVYNG 99

[Close]

BLAST of Carg10428 vs. Swiss-Prot
Match: sp|Q9LTV3|SAU72_ARATH (Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-08
Identity = 28/67 (41.79%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 106 VEEGHFVVFAADGDERKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQ 165
           V EGH  V+   GDE +RFV++ + L++P F+ LL  + +EYG++QKG L +PC     +
Sbjct: 50  VPEGHVPVYV--GDEMERFVVSAELLNHPVFIGLLNRSAQEYGYEQKGVLQIPCHVLVFE 109

Query: 166 KIVEERR 173
           +I+E  R
Sbjct: 110 RIMESLR 114

[Close]

BLAST of Carg10428 vs. Swiss-Prot
Match: sp|Q9SGU2|SAU71_ARATH (Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.1e-08
Identity = 33/100 (33.00%), Postives = 55/100 (55.00%), Query Frame = 0


Query: 73  SMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDERKRFVINLKFLS 132
           S+L+       +K+ KH S+             V EGH  V+   G E +RFV+N + L+
Sbjct: 18  SLLRSESQRGRTKKEKHKSW-------------VPEGHVPVYV--GHEMERFVVNAELLN 77

Query: 133 NPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERR 173
           +P F+ LL+ + +EYG++Q+G L +PC     ++I+E  R
Sbjct: 78  HPVFVALLKQSAQEYGYEQQGVLRIPCHVLVFERILESLR 102

[Close]

BLAST of Carg10428 vs. Swiss-Prot
Match: sp|O65695|SAU50_ARATH (Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.2e-07
Identity = 32/88 (36.36%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 73  SMLQKSLSPLMSKEPKH-DSFDEEFDAAVMVPKDVEEGHFVVFAADGDERKRFVINLKFL 132
           +ML++ L    S   K+   +DE+      +P DV +GHF V+   G+ R R+++ + FL
Sbjct: 14  AMLKQILKRCSSLGKKNGGGYDED-----CLPLDVPKGHFPVYV--GENRSRYIVPISFL 73

Query: 133 SNPAFLRLLELAKEEYGFQQKGALTVPC 160
           ++P F  LL+ A+EE+GF     LT+PC
Sbjct: 74  THPEFQSLLQRAEEEFGFDHDMGLTIPC 94

[Close]

BLAST of Carg10428 vs. Swiss-Prot
Match: sp|O64538|SAU40_ARATH (Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.5e-07
Identity = 31/84 (36.90%), Postives = 48/84 (57.14%), Query Frame = 0


Query: 102 VPKDVEEGHFVVFAADGDERKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPP 161
           V   V  GH  V    G++++RFV++ + L++P F+ LL  + +EYG+ QKG L +PC  
Sbjct: 44  VASSVPSGHVPVNV--GEDKERFVVSAELLNHPVFVGLLNRSAQEYGYTQKGVLHIPCNV 103

Query: 162 EELQKIVEERRK---QKTGEWIAS 183
              +++VE  R      T E IAS
Sbjct: 104 FVFEQVVESLRSGIADDTSELIAS 125

[Close]

BLAST of Carg10428 vs. TrEMBL
Match: tr|A0A0A0KEQ9|A0A0A0KEQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446450 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 9.0e-53
Identity = 107/125 (85.60%), Postives = 115/125 (92.00%), Query Frame = 0


Query: 66  MKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDERKRFV 125
           MKLRL I++LQKSLSPL+SKE +H+SF EEF+AA  VPKDVEEGHFVVFA DGDERKRFV
Sbjct: 1   MKLRLVIALLQKSLSPLLSKESRHESFYEEFEAAATVPKDVEEGHFVVFAVDGDERKRFV 60

Query: 126 INLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTGEWIASSVH 185
           INL+FLSNP FLRLLELAKEEYGFQQKGALTVPC PEELQKIVEERRKQK GEWIASSVH
Sbjct: 61  INLEFLSNPEFLRLLELAKEEYGFQQKGALTVPCRPEELQKIVEERRKQKNGEWIASSVH 120

Query: 186 IITGY 191
           IIT +
Sbjct: 121 IITSF 125

[Close]

BLAST of Carg10428 vs. TrEMBL
Match: tr|A0A2P6RAY9|A0A2P6RAY9_ROSCH (Putative small auxin-up RNA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0470231 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.1e-29
Identity = 72/112 (64.29%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 66  MKLRLFISMLQKSLSPLMSKEP---KHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDERK 125
           MKLRL I  LQK L  L +K P   +HD FDE+ D A MVP+DV+EG+F VFA  G E K
Sbjct: 1   MKLRLIIEKLQKGLLLLATKGPHDDQHDEFDEDLDVAKMVPEDVKEGYFAVFAVKGKEPK 60

Query: 126 RFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQ 175
           RFVI L+ L+NPAFL+LLE AKEEYGFQQKGAL VPC PE+L KI+E RR++
Sbjct: 61  RFVIKLESLNNPAFLKLLEQAKEEYGFQQKGALEVPCRPEDLHKILENRREK 112

[Close]

BLAST of Carg10428 vs. TrEMBL
Match: tr|A0A2P4JEE2|A0A2P4JEE2_QUESU (Auxin-responsive protein saur32 OS=Quercus suber OX=58331 GN=CFP56_25464 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.4e-28
Identity = 71/120 (59.17%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 61  RNFILMKLRLF---ISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAAD 120
           RN  L+ LRLF   I  LQKS+S L  +EP      EE +A  +VP DV EGHF VFA  
Sbjct: 10  RNKALVMLRLFNVLIEKLQKSISVLAPREP--GQLKEELEAVAVVPDDVTEGHFAVFAIK 69

Query: 121 GDERKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTG 178
           G+E KRFV+ L +L+NPAFLRLLE AKEEYGF QKGAL+VPC PEELQKI++++ ++ TG
Sbjct: 70  GEETKRFVVELDYLTNPAFLRLLEQAKEEYGFSQKGALSVPCRPEELQKIIDDKMEKSTG 127

[Close]

BLAST of Carg10428 vs. TrEMBL
Match: tr|A0A2P4JEF5|A0A2P4JEF5_QUESU (Auxin-responsive protein saur32 OS=Quercus suber OX=58331 GN=CFP56_25463 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.4e-28
Identity = 71/120 (59.17%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 61  RNFILMKLRLF---ISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAAD 120
           RN  L+ LRLF   I  LQKS+S L  +EP      EE +A  +VP DV EGHF VFA  
Sbjct: 10  RNKALVMLRLFNVLIEKLQKSISVLAPREP--GQLKEELEAVAVVPDDVTEGHFAVFAIK 69

Query: 121 GDERKRFVINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTG 178
           G+E KRFV+ L +L+NPAFLRLLE AKEEYGF QKGAL+VPC PEELQKI++++ ++ TG
Sbjct: 70  GEETKRFVVELDYLTNPAFLRLLEQAKEEYGFSQKGALSVPCRPEELQKIIDDKMEKSTG 127

[Close]

BLAST of Carg10428 vs. TrEMBL
Match: tr|A0A2N9I581|A0A2N9I581_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47337 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.3e-27
Identity = 69/113 (61.06%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 65  LMKLRLFISMLQKSLSPLMSKEPKHDSFDEEFDAAVMVPKDVEEGHFVVFAADGDERKRF 124
           L  LRLFI  LQKSLS L  +E   + F+EE   A +VP  V EGHF VFA  G+E KRF
Sbjct: 14  LAMLRLFIEKLQKSLSVLAPRETDLNDFNEELVVAAVVPDYVTEGHFSVFAIKGEETKRF 73

Query: 125 VINLKFLSNPAFLRLLELAKEEYGFQQKGALTVPCPPEELQKIVEERRKQKTG 178
           V+ L +L+NPAFLRLL+ AKEEYGF QKGALTVPC PEELQKI+++  ++ TG
Sbjct: 74  VVELYYLTNPAFLRLLDQAKEEYGFTQKGALTVPCRPEELQKILDDGTEKSTG 126

The following BLAST results are available for this feature:

BLAST of Carg10428 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022977263.1	7.6e-104	99.47	uncharacterized protein LOC111477631 [Cucurbita maxima]	[more]
XP_023543955.1	1.3e-103	99.47	uncharacterized protein LOC111803675 [Cucurbita pepo subsp. pepo]	[more]
XP_022925647.1	1.0e-100	97.89	uncharacterized protein LOC111433002 [Cucurbita moschata]	[more]
KGN48185.1	1.4e-52	85.60	hypothetical protein Csa_6G446450 [Cucumis sativus]	[more]
XP_024191352.1	4.7e-29	64.29	auxin-responsive protein SAUR72-like [Rosa chinensis] >PRQ43605.1 putative small...	[more]

BLAST of Carg10428 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09870.1	5.7e-21	45.87	SAUR-like auxin-responsive protein family	[more]
AT2G28085.1	2.8e-15	41.28	SAUR-like auxin-responsive protein family	[more]
AT5G20810.2	1.6e-10	38.30	SAUR-like auxin-responsive protein family	[more]
AT3G43120.1	4.6e-10	39.05	SAUR-like auxin-responsive protein family	[more]
AT2G37030.1	7.8e-10	39.08	SAUR-like auxin-responsive protein family	[more]

BLAST of Carg10428 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9ZUZ3\|SAU32_ARATH	1.8e-08	35.90	Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S...	[more]
sp\|Q9LTV3\|SAU72_ARATH	1.8e-08	41.79	Auxin-responsive protein SAUR72 OS=Arabidopsis thaliana OX=3702 GN=SAUR72 PE=2 S...	[more]
sp\|Q9SGU2\|SAU71_ARATH	9.1e-08	33.00	Auxin-responsive protein SAUR71 OS=Arabidopsis thaliana OX=3702 GN=SAUR71 PE=2 S...	[more]
sp\|O65695\|SAU50_ARATH	1.2e-07	36.36	Auxin-responsive protein SAUR50 OS=Arabidopsis thaliana OX=3702 GN=SAUR50 PE=1 S...	[more]
sp\|O64538\|SAU40_ARATH	3.5e-07	36.90	Auxin-responsive protein SAUR40 OS=Arabidopsis thaliana OX=3702 GN=SAUR40 PE=2 S...	[more]

BLAST of Carg10428 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KEQ9\|A0A0A0KEQ9_CUCSA	9.0e-53	85.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446450 PE=4 SV=1	[more]
tr\|A0A2P6RAY9\|A0A2P6RAY9_ROSCH	3.1e-29	64.29	Putative small auxin-up RNA OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0470231 ...	[more]
tr\|A0A2P4JEE2\|A0A2P4JEE2_QUESU	3.4e-28	59.17	Auxin-responsive protein saur32 OS=Quercus suber OX=58331 GN=CFP56_25464 PE=4 SV...	[more]
tr\|A0A2P4JEF5\|A0A2P4JEF5_QUESU	3.4e-28	59.17	Auxin-responsive protein saur32 OS=Quercus suber OX=58331 GN=CFP56_25463 PE=4 SV...	[more]
tr\|A0A2N9I581\|A0A2N9I581_FAGSY	1.3e-27	61.06	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47337 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10428-RA	Carg10428-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 99..168 e-value: 1.5E-19 score: 69.8
None	No IPR available	PANTHER	PTHR31374	FAMILY NOT NAMED	coord: 65..172
None	No IPR available	PANTHER	PTHR31374:SF19	F8A24.8 PROTEIN	coord: 65..172

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10428	Csa6G446450	Cucumber (Chinese Long) v2	carcuB0267
Carg10428	MELO3C024464	Melon (DHL92) v3.5.1	carmeB0242
Carg10428	ClCG04G009290	Watermelon (Charleston Gray)	carwcgB0232
Carg10428	CSPI06G24670	Wild cucumber (PI 183967)	carcpiB0271
Carg10428	Cucsa.124660	Cucumber (Gy14) v1	carcgyB0281
Carg10428	CmaCh03G012140	Cucurbita maxima (Rimu)	carcmaB0333
Carg10428	CmoCh03G012100	Cucurbita moschata (Rifu)	carcmoB0336
Carg10428	Lsi01G013100	Bottle gourd (USVL1VR-Ls)	carlsiB214
Carg10428	Cp4.1LG10g04390	Cucurbita pepo (Zucchini)	carcpeB0337
Carg10428	CsGy6G024080	Cucumber (Gy14) v2	carcgybB0255
Carg10428	MELO3C024464.2	Melon (DHL92) v3.6.1	carmedB0250
Carg10428	CsaV3_6G039880	Cucumber (Chinese Long) v3	carcucB0270
Carg10428	Bhi03G001207	Wax gourd	carwgoB0306

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10428	Silver-seed gourd	carcarB276
Carg10428	Silver-seed gourd	carcarB278
Carg10428	Cucurbita maxima (Rimu)	carcmaB0331
Carg10428	Cucurbita maxima (Rimu)	carcmaB0335
Carg10428	Cucurbita moschata (Rifu)	carcmoB0334
Carg10428	Cucurbita moschata (Rifu)	carcmoB0338
Carg10428	Cucurbita pepo (Zucchini)	carcpeB0338
Carg10428	Cucurbita pepo (Zucchini)	carcpeB0339
Carg10428	Cucurbita pepo (Zucchini)	carcpeB0340
Carg10428	Watermelon (97103) v1	carwmB0227
Carg10428	Watermelon (97103) v2	carwmbB0241
Carg10428	Watermelon (97103) v2	carwmbB0244
Carg10428	Wax gourd	carwgoB0302