Carg10422 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg10422
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Otu domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_098 : 79551 .. 84987 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATGAACGATTATGATTCCGATGCGATTAGTTGGGGTCTTCGTCTTTTCAATGGGGATTCATCGTATAGTTCCGAGTACTTTCCTGACATGGCACAACACGATGTTAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAATCATGTGGAGAACGATGAGATTATTGCGCACACTCTTCAGGAGGAGTTTTCCCAATTAGAAATCGCAGAGGCCTCGGGCTATTCAAATATAGAAGATCCCTCCCAAGCATCTAAGTATGAGCTTGGTTGGGACAATCCATCCTCAAGGAACTACGGTTCAGGTTCTTACTAATACTAGCTATCTACTCCTTCTACGTATGTGGGATAGTGATCCTTATACGGTGCGTAAAATTTTTATAATCTGCAGAAAATGATTCTATTGAAGATGTAGTTGAAACTGTGGAGGCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAGCTACTATCCACATGGGCATGATAGTCAAGTAGATTGGAAAATGGATCAAGTGATTCCAGCACCCGTGAGATTTTCTAATTACATCTTTTTATTTTGGCATAGCAGTTGAAGTAAACCATAGATTCATTGCGATAAAAATATTACCTCCTAGACTGATCAATTTATGCAAGAAATTTTATGGAGCATGCTTTTTTGCTGGGGCTTGTGACTGCCAACATCTAGGAATACTCTATATTTGCTTAGAATTTGGAATTGATTTCTTCATAATTGGGAAATATTTATAATGATTTGCGTAGGTTCTTTTCTTTTTTCTTCTCGAAATTCTGGAAGATTTTGAACTATTCTTACAACATTTCTGCATTTTTTTCAGTCTCGAATGGTTACTGGAATCTTAGGGGTCTTGTACATTTGGTAGATGCTTTCTCTGTGAACCATTGACTTGCTCATGCTCTCTTTAACTGATTCCCAATATGCTGATTTTTTTATTTTTTATTTTCACAATTTATTTAATTTTTTGAACGACAATCTAGGAATCTTTTGAAACTATACAGTTGCAAAAGCCGACCTCTGCTTCTTTTCCAATTTCTGTGTTAACACAAGTATGCGGGACCCAAGATAATATCTGCCCTTGCCTGCCTACTACAAAGTTGCCTTACAATTTCTCATGTGATTTGGGCAGCATGTCCCAAGAATTAATGGTGAGATTCCATCAATTGATGAAGTAACTTCAGATCATCAACGGTTGCTGGATAGGTAATATCTCAGAAGCTCTCTGTTGTTTGATATGGTTGAATCTGTAGTCTATTGTTTATAGCTTGTGTGTGTTTGAATTTCTTTTACCTTTTTTAGTCTGCTACTTGCATGCCTTTTCTCTTAGTGTATGATTGCTGTTTGATATTGAATTTTGGGTATTAATTGTTATCTATCCACTGCCTTCTCAATCTTAGGTTGAAGGTATATGATTTTGTTGAACGTAAGGTTAAAGGGGATGGTAATTGTCAGGTTAGTAGTTTCTCATGCATGTGGTTCTGATCACAATTGAACAATTTGAATTGACCATGACATATATCAGTTTTCAATTTTCAGTTCCGTGCTTTATCAGATCAACTATTTGGAACATCTAATCGCCACAAGTTGGTGAGAGAAAATGTTGTGAATCAGGTATGTCGTTGTTGCTTTTAGCTCTACACTTGTATCTTCTCATATCTACTGGATTATGACCTATTTAACATGGACCTCTGTCTCTGTCTCTGTCTCTCTTTTTCTTCATACCAGCTCAAGTCACATCGGGAGATTTATGAGGGATATGTTCCCATGGCATATGATGATTATTTGGAAAAGATGTCCATGTATCATTTAAACTTCTATTTATTTAATTCTTTTCAACCCAATTTTCTAGTCCTGTTTGGATAATTCTTATTCTACTTCATTTGAAATTTTTCTAGGACTGGTGAGTGGGGTGATCATGTAACACTTCAGGCAGCTGCAGATTGGGTATGGTCATCGCAAGACACTGTCTCCGGCTTTGAAGTGTTTTCTTCAAACAGTGTTGAAACTTGGAAGCTTAAAATATGTTTGTTGTTCATTCATGCAGTGAACCGAAATCTCTGAAAAATAATTTCGACCATGTTAATATTTAGAATGGCTAAAATACTTGAGCAAACTTATGACAGATTTGAACGTTCTAGGTTCAGCTATTTTGTGTTCATTGGCTTATTTATTACTTCAGAGTTAAATGTCCATTTTATTAACGGTATATGTCTTGGGTGACGTAACAATGCCCAACTAATGCTGTCAATTACTAGAATGAACATGCTAGATTGATATGTAAACATTCGTGAAGCTAAATGTGTCTACGACTGTTTTTTGCTGCAGTATGGCGTTAAAATATTCGTTATGACTTCTTTTAAGGAAACCTGTTGTATAGAGATTCTCCCCAGTTTTCAGAAGAAAAGGCAAGGTAAATTCTTCACTCAAATGTTTAATTAACTCAAGTGTAATTTTTCTGGTTATTCTACCTGGTTATGAGCCCATGCATGGCTCATTCTCTTGCTGATTTTTTTGGAAAATGGAATTTTAGTGCAGTACGCCTTTTCATTTGTTCTTACTCTTTCACTAGCATTTTTACTTTCAATTTCTTTTCCTTTGTAATTCAGTCAGATTGAATGAAGGAAGATGGTCTTTGAAAGTGCATCTGTTCTTTCCCTTCCGCACTGTTTTTCAGTTCTTTTTGGTTTCATTTGTTGTATCCTGAGTACTGCGAACCTGTTATCTCTTGCTAATAAACCAAAACCCATCTCTTTTATACCAAAAAGAGACAATTCCAATATTCAAATTCATTGACTTCTCTCCTCCTTTTGTGATCCACCATTCTTTATTTTCTTTATTCATTAATAGAACTCTGCATCAATGTTACATGTATGTAATTTTGTCTGCAAAGAGCTTCATATATTAGTCTGTTGTGCCATATGCAGTCATTTTCCTGAGCTTTTGGGCAGAGGTGCATTACAATTCAATCTATCCCCAAGAAGGTAAATATTTTCCTGTTCTTTCCGTACTGAATCTAAAGCTTCCTGATATTATATCTCGTGGCTGATCATTCCATTCTTTAGTCGGAATAAGAACACATGTAAGTTTCATTTTCTTGAATTGCACCGAGCTCCTTACCAACTTGATTTGATTGGTTGGGCTTGAATATTGATTCTATAGTTGTACCTCTCTAATTTTAATGGTCCAACCCTCACTTTTGATGCCTTAGACGTTTTCTTCTTGGGATCAAGTTGGTCTAAATTAGCTGCTAATCATTAATGCCACAAGTCCATAACTCATAGCTCCATATTTTACTCAGATGGTTCCTCAGTTGCAGATGAGCAATCAAATGACAATAGAAAGAGGAGGAGATGGTGGATTTTTGGACATAAGCACTAAGACTCCGGGCAAAAGGTGCATTAAGACTTGACCCCTACTGCATCGTCTTCTTTAAATTTCAAGAAGACTTCTCGCATCTCGGGCCCCCTTTTTATCAATAACTCCCATCTGCAGTTTATTGCATGAATAAAGATTTGGGGGTAGGACTCCACAACATTCCATATTGACTCCGATGATTGGACTTCAATGTTTTCAATTTGTAACCAGAGAAACTCGGTCTGTCCTGCTCTGGATCTTATTTTACAATTTTATATTAAATAGATTAATAAAAGTTGCAGGATTCTTGCACTTTATTGACCCCCTTGCTTTGTGCTTTGATTGAAGAGAACGCAACGAACTTGGATTTGTTTTATTTTAGTTCAGAATTTTTATAGATCTAACACTGTTGCATCTCATTCATATTGGCCTGCCATTCCAATAACCTTTAGATGCTTAGATCTGTACTTAAAAAGGCATCTTACGGTCTCTGCAGCTTCTTTGATATTATCTCCCTTCCATTTTCTTCTGTTCTTCATTGCAAATCCCATTCTATCCATTCAGACTTGATTAAAAGTAGAAGGGACGTTTTCATTTGAGTATCAGTATTTACTTCAATTGTATATTTCTCTCTTAGTTGATCTAACCCAGCAGCAGAGTAACAGAACAAACGCGGCATAGGGATGGATTCTTTTGACAGAAAATGTTTTGAGGTTAGAAATCTCATCCCTTCCTAATCTGAAAGTTCCTTTCTTTAACAGATTTTTAATGATTTTAGTTGGCAAAAAACAAATAATTATAATATTTAATTTCCAGTACTAGGAATGTTCCATTTCATGCCCCACTGAAAATGTAACGAGTTGGAAGATATAAGCAGGCCATGTTGACAATGGTGGGTCCAATCATTCAGTTGAGCCAGAGAAGGTAGGTATTTGAATTTTAATAGAAACAAAAATAATCGAATTTCCATAGCAGTAGTAGAAGAGCCTACAGATTCTTCTTCCCTTTACAAATTCCATCCAAAACCAGAACGAGGAAGGAGAACGGAGAAGAGATGAAAAAGGGTAAATTTCCGTACTGCAATTTGCTGTCTGTGTCTGTTTGATCCCTTTCAAATTTGTATTATTCTCTGAAGACCTCCTCCTCCTGTCTCTCCTCCGCCTCGTCTGCCGTCGACGGCTGCAACAGTAGCGCCGTAAACGGCATGTGGCGATAATCATTGCCCGCGGCAGAGTAGTCCAACCCCACCGGCTGGCATAAATCCAGACGGCAGCTCGGCGGTGGCATCGCGAACATCCCCTGCTCATCGGCGGCAACCCCCACCGACTGAACCCGACACGAAACGGACAGAGCGGACGAGGCCATAGCCGGTGAAATGGTTGAGATCGGAGCTGCCGGAACAGTACCAGTGCCAGTGGCGGCAATAATGGAGGGCTCAGCCTGACGAAGAAGCCACTCGATAGTCTCGCCATCGGAACGATGACCGAGCTCGCGCGTCAACTGAAAGATTCGGGCGGCACAGAGGGCCGGCATACGGACACGCCGCCCTCTTCCGTTGACCTTGGTGTGACGGTCCCTCGAAGAAGAAGAGGATGATAACGAGGCGGTGGATTTGCGAGGAACGACGGATTGCTGGGTGACGTTGGTCGGAGACGCGTTACTACGGACGACTGAGTGAGAAGCAGCGGTGGGCTGAGAATGGTGATCGGAAGAAGAAGGGAATTTGTGTAGAGCGATCTCCGATCCCATAGTCGAAATACTGTGATTTAATTTCAGAAGAGAAAGAAATGAAAGGGGTTTTTTGTCTTTAGGGTTTTGATCGGAAGGAGGAGGAGGAGGAAGTCTTAGGGTTTCAGAATGAGAGCTTCGGAATGAGAAGAGGAAGGCACCGATGAGGAATAACTAATAAATAAAATAAAATAACTCACATCTGGGTCCACTTCCTGTTTGGTCCCACTCCACCTTTGGGCCCCACCCAACAAGTGGGCCCGATTCAATTCTTTCAAATTTATTGTCTCTCTTTTCAATTTTAAGGCTAAATTCACAATCCTC

mRNA sequence

ATGGTCATGAACGATTATGATTCCGATGCGATTAGTTGGGGTCTTCGTCTTTTCAATGGGGATTCATCGTATAGTTCCGAGTACTTTCCTGACATGGCACAACACGATGTTAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAATCATGTGGAGAACGATGAGATTATTGCGCACACTCTTCAGGAGGAGTTTTCCCAATTAGAAATCGCAGAGGCCTCGGGCTATTCAAATATAGAAGATCCCTCCCAAGCATCTAAGTATGAGCTTGGTTGGGACAATCCATCCTCAAGGAACTACGGTTCAGAAAATGATTCTATTGAAGATGTAGTTGAAACTGTGGAGGCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAGCTACTATCCACATGGGCATGATAGTCAAGTAGATTGGAAAATGGATCAAGTGATTCCAGCACCCCATGTCCCAAGAATTAATGGTGAGATTCCATCAATTGATGAAGTAACTTCAGATCATCAACGGTTGCTGGATAGGTTGAAGGTATATGATTTTGTTGAACGTAAGGTTAAAGGGGATGGTAATTGTCAGTTCCGTGCTTTATCAGATCAACTATTTGGAACATCTAATCGCCACAAGTTGGTGAGAGAAAATGTTGTGAATCAGCTCAAGTCACATCGGGAGATTTATGAGGGATATGTTCCCATGGCATATGATGATTATTTGGAAAAGATGTCCATGACTGGTGAGTGGGGTGATCATGTAACACTTCAGGCAGCTGCAGATTGGTATGGCGTTAAAATATTCGTTATGACTTCTTTTAAGGAAACCTGTTGTATAGAGATTCTCCCCAGTTTTCAGAAGAAAAGGCAAGTCAGATTGAATGAAGGAAGATGGTCTTTGAAAGTGCATCTGTTCTTTCCCTTCCGCACTGTTTTTCAGTTCTTTTTGGTTTCATTTGTTGTATCCTGAGTACTGCGAACCTGTTATCTCTTGCTAATAAACCAAAACCCATCTCTTTTATACCAAAAAGAGACAATTCCAATATTCAAATTCATTGACTTCTCTCCTCCTTTTGTGATCCACCATTCTTTATTTTCTTTATTCATTAATAGAACTCTGCATCAATGTTACATGTATGTAATTTTGTCTGCAAAGAGCTTCATATATTAGTCTGTTGTGCCATATGCAGTCATTTTCCTGAGCTTTTGGGCAGAGGTGCATTACAATTCAATCTATCCCCAAGAAGGTAAATATTTTCCTGTTCTTTCCGTACTGAATCTAAAGCTTCCTGATATTATATCTCGTGGCTGATCATTCCATTCTTTAGTCGGAATAAGAACACATGTAAGTTTCATTTTCTTGAATTGCACCGAGCTCCTTACCAACTTGATTTGATTGGTTGGGCTTGAATATTGATTCTATAGTTGTACCTCTCTAATTTTAATGGTCCAACCCTCACTTTTGATGCCTTAGACGTTTTCTTCTTGGGATCAAGTTGGTCTAAATTAGCTGCTAATCATTAATGCCACAAGTCCATAACTCATAGCTCCATATTTTACTCAGATGGTTCCTCAGTTGCAGATGAGCAATCAAATGACAATAGAAAGAGGAGGAGATGGTGGATTTTTGGACATAAGCACTAAGACTCCGGGCAAAAGGTGCATTAAGACTTGACCCCTACTGCATCGTCTTCTTTAAATTTCAAGAAGACTTCTCGCATCTCGGGCCCCCTTTTTATCAATAACTCCCATCTGCAGTTTATTGCATGAATAAAGATTTGGGGGTAGGACTCCACAACATTCCATATTGACTCCGATGATTGGACTTCAATGTTTTCAATTTGTAACCAGAGAAACTCGGTCTGTCCTGCTCTGGATCTTATTTTACAATTTTATATTAAATAGATTAATAAAAGTTGCAGGATTCTTGCACTTTATTGACCCCCTTGCTTTGTGCTTTGATTGAAGAGAACGCAACGAACTTGGATTTGTTTTATTTTAGTTCAGAATTTTTATAGATCTAACACTGTTGCATCTCATTCATATTGGCCTGCCATTCCAATAACCTTTAGATGCTTAGATCTGTACTTAAAAAGGCATCTTACGGTCTCTGCAGCTTCTTTGATATTATCTCCCTTCCATTTTCTTCTGTTCTTCATTGCAAATCCCATTCTATCCATTCAGACTTGATTAAAAGTAGAAGGGACGTTTTCATTTGAGTATCAGTATTTACTTCAATTGTATATTTCTCTCTTAGTTGATCTAACCCAGCAGCAGAGTAACAGAACAAACGCGGCATAGGGATGGATTCTTTTGACAGAAAATGTTTTGAGTACTAGGAATGTTCCATTTCATGCCCCACTGAAAATGTAACGAGTTGGAAGATATAAGCAGGCCATGTTGACAATGGTGGGTCCAATCATTCAGTTGAGCCAGAGAAGGTAGGTATTTGAATTTTAATAGAAACAAAAATAATCGAATTTCCATAGCAGTAGTAGAAGAGCCTACAGATTCTTCTTCCCTTTACAAATTCCATCCAAAACCAGAACGAGGAAGGAGAACGGAGAAGAGATGAAAAAGGGTAAATTTCCGTACTGCAATTTGCTGTCTGTGTCTGTTTGATCCCTTTCAAATTTGTATTATTCTCTGAAGACCTCCTCCTCCTGTCTCTCCTCCGCCTCGTCTGCCGTCGACGGCTGCAACAGTAGCGCCGTAAACGGCATGTGGCGATAATCATTGCCCGCGGCAGAGTAGTCCAACCCCACCGGCTGGCATAAATCCAGACGGCAGCTCGGCGGTGGCATCGCGAACATCCCCTGCTCATCGGCGGCAACCCCCACCGACTGAACCCGACACGAAACGGACAGAGCGGACGAGGCCATAGCCGGTGAAATGGTTGAGATCGGAGCTGCCGGAACAGTACCAGTGCCAGTGGCGGCAATAATGGAGGGCTCAGCCTGACGAAGAAGCCACTCGATAGTCTCGCCATCGGAACGATGACCGAGCTCGCGCGTCAACTGAAAGATTCGGGCGGCACAGAGGGCCGGCATACGGACACGCCGCCCTCTTCCGTTGACCTTGGTGTGACGGTCCCTCGAAGAAGAAGAGGATGATAACGAGGCGGTGGATTTGCGAGGAACGACGGATTGCTGGGTGACGTTGGTCGGAGACGCGTTACTACGGACGACTGAGTGAGAAGCAGCGGTGGGCTGAGAATGGTGATCGGAAGAAGAAGGGAATTTGTGTAGAGCGATCTCCGATCCCATAGTCGAAATACTGTGATTTAATTTCAGAAGAGAAAGAAATGAAAGGGGTTTTTTGTCTTTAGGGTTTTGATCGGAAGGAGGAGGAGGAGGAAGTCTTAGGGTTTCAGAATGAGAGCTTCGGAATGAGAAGAGGAAGGCACCGATGAGGAATAACTAATAAATAAAATAAAATAACTCACATCTGGGTCCACTTCCTGTTTGGTCCCACTCCACCTTTGGGCCCCACCCAACAAGTGGGCCCGATTCAATTCTTTCAAATTTATTGTCTCTCTTTTCAATTTTAAGGCTAAATTCACAATCCTC

Coding sequence (CDS)

ATGGTCATGAACGATTATGATTCCGATGCGATTAGTTGGGGTCTTCGTCTTTTCAATGGGGATTCATCGTATAGTTCCGAGTACTTTCCTGACATGGCACAACACGATGTTAATTTCTATGAGCATTATTATGGAAATCATTGCAATAATGAGGTTAATCATGTGGAGAACGATGAGATTATTGCGCACACTCTTCAGGAGGAGTTTTCCCAATTAGAAATCGCAGAGGCCTCGGGCTATTCAAATATAGAAGATCCCTCCCAAGCATCTAAGTATGAGCTTGGTTGGGACAATCCATCCTCAAGGAACTACGGTTCAGAAAATGATTCTATTGAAGATGTAGTTGAAACTGTGGAGGCTTCTAGTTCATGTTCTAGTCCAGGTCAAGAGGATAGCTACTATCCACATGGGCATGATAGTCAAGTAGATTGGAAAATGGATCAAGTGATTCCAGCACCCCATGTCCCAAGAATTAATGGTGAGATTCCATCAATTGATGAAGTAACTTCAGATCATCAACGGTTGCTGGATAGGTTGAAGGTATATGATTTTGTTGAACGTAAGGTTAAAGGGGATGGTAATTGTCAGTTCCGTGCTTTATCAGATCAACTATTTGGAACATCTAATCGCCACAAGTTGGTGAGAGAAAATGTTGTGAATCAGCTCAAGTCACATCGGGAGATTTATGAGGGATATGTTCCCATGGCATATGATGATTATTTGGAAAAGATGTCCATGACTGGTGAGTGGGGTGATCATGTAACACTTCAGGCAGCTGCAGATTGGTATGGCGTTAAAATATTCGTTATGACTTCTTTTAAGGAAACCTGTTGTATAGAGATTCTCCCCAGTTTTCAGAAGAAAAGGCAAGTCAGATTGAATGAAGGAAGATGGTCTTTGAAAGTGCATCTGTTCTTTCCCTTCCGCACTGTTTTTCAGTTCTTTTTGGTTTCATTTGTTGTATCCTGA

Protein sequence

MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEIIAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQVRLNEGRWSLKVHLFFPFRTVFQFFLVSFVVS

Homology

[Close]

BLAST of Carg10422 vs. NCBI nr
Match: XP_022926086.1 (RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 602.1 bits (1551), Expect = 1.1e-168
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120
           IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120

Query: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180
           SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK
Sbjct: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180

Query: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240
           VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY
Sbjct: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240

Query: 241 LEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 292
           LEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV
Sbjct: 241 LEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 291

[Close]

BLAST of Carg10422 vs. NCBI nr
Match: XP_023543698.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 602.1 bits (1551), Expect = 1.1e-168
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120
           IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120

Query: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180
           SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK
Sbjct: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180

Query: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240
           VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY
Sbjct: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240

Query: 241 LEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 292
           LEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV
Sbjct: 241 LEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 291

[Close]

BLAST of Carg10422 vs. NCBI nr
Match: XP_022978801.1 (RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima])

HSP 1 Score: 599.7 bits (1545), Expect = 5.7e-168
Identity = 290/291 (99.66%), Postives = 290/291 (99.66%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI
Sbjct: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEA 120
           IAHTLQEEFSQLEIAEASGYSNIEDPSQASKY LGWDNPSSRNYGSENDSIEDVVETVEA
Sbjct: 61  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYALGWDNPSSRNYGSENDSIEDVVETVEA 120

Query: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180
           SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK
Sbjct: 121 SSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLK 180

Query: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240
           VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY
Sbjct: 181 VYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDY 240

Query: 241 LEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 292
           LEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV
Sbjct: 241 LEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 291

[Close]

BLAST of Carg10422 vs. NCBI nr
Match: XP_016902883.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo] >XP_016902884.1 PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 542.3 bits (1396), Expect = 1.1e-150
Identity = 261/295 (88.47%), Postives = 277/295 (93.90%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSS----YSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 60
           MVMNDYDSDAI WGLR FNGD +    YS+EY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 61  NDEIIAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVE 120
           NDEIIAHTLQEEFSQLEIAEASGYSN+EDPS ASK+ LGW+NPSSR Y SENDS+ED VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKYSSENDSVEDEVE 120

Query: 121 TVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLL 180
           TVE SSSCSSPGQED+YYP+GHD+QVDW+MDQ+IPAPHVPRINGEIPSIDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMA 240
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTS+RHKLVRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 241 YDDYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 292
           YDDYLEKMSM+GEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILP+FQKK+QV
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPNFQKKKQV 295

[Close]

BLAST of Carg10422 vs. NCBI nr
Match: XP_016902885.1 (PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 534.6 bits (1376), Expect = 2.2e-148
Identity = 259/295 (87.80%), Postives = 276/295 (93.56%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSS----YSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 60
           MVMNDYDSDAI WGLR FNGD +    YS+EY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 61  NDEIIAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVE 120
           NDEIIAHTLQEEFSQLEIAEASGYSN+EDPS ASK+ LGW+NPSSR Y  +NDS+ED VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKY--KNDSVEDEVE 120

Query: 121 TVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLL 180
           TVE SSSCSSPGQED+YYP+GHD+QVDW+MDQ+IPAPHVPRINGEIPSIDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMA 240
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTS+RHKLVRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 241 YDDYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 292
           YDDYLEKMSM+GEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILP+FQKK+QV
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPNFQKKKQV 293

[Close]

BLAST of Carg10422 vs. TAIR10
Match: AT5G03330.1 (Cysteine proteinases superfamily protein)

HSP 1 Score: 229.9 bits (585), Expect = 2.1e-60
Identity = 129/278 (46.40%), Postives = 170/278 (61.15%), Query Frame = 0


Query: 44  YGNHCNNEVNHVENDEIIAHTLQEEFSQLEIAEASGYSNI-------------------- 103
           Y +H +++   V+NDEIIA TLQ++F QLEIAE++ YS+                     
Sbjct: 54  YEDHRSSD---VDNDEIIARTLQDDFLQLEIAESNDYSHXXXXXXXXXXXXXXXXXXXXX 113

Query: 104 ----EDPSQASKYELGWDNPSSRNYGSENDSIEDVVETVEASSSCSSPGQEDSYYPHGHD 163
                D S A  Y   W    +   G  +DS+           SCSSP   D Y      
Sbjct: 114 GYAWNDQSPAVDYSSEWIGNDNDQDGRSDDSVN--------VFSCSSPSDTDEYVYSWES 173

Query: 164 SQVD------WKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDG 223
            Q D       +++Q++P P++P+INGEIP  +E  SDH+RL +RL+++DF E KV GDG
Sbjct: 174 DQCDADGEFGRRLNQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDG 233

Query: 224 NCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDH 283
           NCQFRAL+DQL+ T++RHK VR  +V QLKS  + Y+GYVPM + DYL KMS +GEWGDH
Sbjct: 234 NCQFRALADQLYKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDH 293

Query: 284 VTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 292
           VTLQAAAD Y VKI V+TSFK+TC IEILP+ Q+ + V
Sbjct: 294 VTLQAAADAYRVKIVVLTSFKDTCYIEILPTSQESKGV 320

[Close]

BLAST of Carg10422 vs. TAIR10
Match: AT5G04250.1 (Cysteine proteinases superfamily protein)

HSP 1 Score: 225.3 bits (573), Expect = 5.3e-59
Identity = 133/312 (42.63%), Postives = 179/312 (57.37%), Query Frame = 0


Query: 7   DSDAISWGLR------LFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 66
           D DA+ WGL       L N  S  S   +         +    Y         +V+ND +
Sbjct: 6   DPDALRWGLHDLEVCTLTNAGSCSSVTRYESGGGGTQGYVREGYNQPV---TGYVDNDAV 65

Query: 67  IAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNP--SSRNYG------------- 126
           IA   Q+E S++  AEASG +++   S  ++    W +P     N G             
Sbjct: 66  IAQFYQDELSRVARAEASGINSLSPTSVVAQ---DWPHPHQGQENQGEAIDITQESDILH 125

Query: 127 SENDSIEDV-VETVEASSSCSSPGQEDSYYPHGHDSQVDW-----KMDQVIPAPHVPRIN 186
           + N ++ED  V  +      SSP ++D         +  W     +++Q+IP  HVP+IN
Sbjct: 126 NHNGNMEDKNVARIRFEGGQSSPSRDDDSVCSVEIEEESWSEVGKRLNQMIPIAHVPKIN 185

Query: 187 GEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVV 246
           GE+PS DE  SDH+RL  RL++Y  VE K++GDGNCQFR+LSDQL+ +   H  VRE VV
Sbjct: 186 GELPSEDEQISDHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQVV 245

Query: 247 NQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCI 292
           NQL  +REIYEGYVPMAY+DYL+ M   GEWGDHVTLQAAAD +GV++FV+TSFK+TC I
Sbjct: 246 NQLAYNREIYEGYVPMAYNDYLKAMKRNGEWGDHVTLQAAADLFGVRMFVITSFKDTCYI 305

[Close]

BLAST of Carg10422 vs. TAIR10
Match: AT3G02070.1 (Cysteine proteinases superfamily protein)

HSP 1 Score: 182.2 bits (461), Expect = 5.1e-46
Identity = 94/195 (48.21%), Postives = 121/195 (62.05%), Query Frame = 0


Query: 97  DNPSSRNYGSENDSIEDVVETVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVP 156
           D+ SS ++ S+ D+ +D +     S   S             D  V  ++  + P PHVP
Sbjct: 3   DSSSSTSWSSKKDTEDDRMIAFMLSEEYSK-----------LDGAVGRRLSNLAPVPHVP 62

Query: 157 RINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRE 216
           RIN  IP++++ T DHQRLL RL VY   E KV GDGNCQFRALSDQL+ +   HK VR 
Sbjct: 63  RINCYIPNLNDATLDHQRLLQRLNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRR 122

Query: 217 NVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKET 276
            VV QLK  R +YE YVPM Y  Y +KM   GEWGDH+TLQAAAD +  KI ++TSF++T
Sbjct: 123 EVVKQLKECRSMYESYVPMKYKRYYKKMGKFGEWGDHITLQAAADRFAAKICLLTSFRDT 182

Query: 277 CCIEILPSFQKKRQV 292
           C IEI+P +Q  + V
Sbjct: 183 CFIEIIPQYQAPKGV 186

[Close]

BLAST of Carg10422 vs. TAIR10
Match: AT3G22260.2 (Cysteine proteinases superfamily protein)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-39
Identity = 75/131 (57.25%), Postives = 94/131 (71.76%), Query Frame = 0


Query: 153 PHVPRINGEIPSIDEVTSDHQRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHK 212
           PH PR+N EIP I++ T DH+ L  RL  Y   E +++GDGNCQFRAL+DQLF  ++ HK
Sbjct: 70  PHTPRVNREIPDINDATLDHELLSGRLATYGLAELQMEGDGNCQFRALADQLFRNADYHK 129

Query: 213 LVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTS 272
            VR++VV QLK  R++YE YVPM Y  Y  KM   GEWGDHVTLQAAAD +  KI ++TS
Sbjct: 130 HVRKHVVKQLKQQRKLYEEYVPMKYRHYTRKMKKHGEWGDHVTLQAAADRFEAKICLVTS 189

Query: 273 FKETCCIEILP 284
           F++   IEILP
Sbjct: 190 FRDQSYIEILP 200

[Close]

BLAST of Carg10422 vs. TAIR10
Match: AT2G39320.1 (Cysteine proteinases superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-15
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 0


Query: 189 VKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEKMSMTG 248
           +K DGNCQFRAL+DQL+  S+ H+LVR+ +V Q  S                   +S   
Sbjct: 2   MKSDGNCQFRALADQLYQNSDCHELVRQEIVKQNMS-------------------LSTNS 61

Query: 249 EWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKK 289
           +WGD VTL+ AAD Y VKI ++TS K    +E LP  QK+
Sbjct: 62  QWGDEVTLRVAADVYQVKIILITSIKLIPFMEFLPKSQKE 82

[Close]

BLAST of Carg10422 vs. Swiss-Prot
Match: sp|Q08BW0|OTU5A_DANRE (OTU domain-containing protein 5-A OS=Danio rerio OX=7955 GN=otud5a PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-09
Identity = 29/92 (31.52%), Postives = 53/92 (57.61%), Query Frame = 0


Query: 184 FVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEK 243
           FV +K+K DG C FRA++DQ++G  + H++VR++ ++ L  + + +  YV   +  Y+ +
Sbjct: 211 FVIKKMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 270

Query: 244 MSMTGEWGDHVTLQAAADWYGVKIFVMTSFKE 276
                  G+H+ +QA A+ Y   + V  S  E
Sbjct: 271 KRKNNCHGNHIEMQAMAEMYNRPVEVYQSGTE 302

[Close]

BLAST of Carg10422 vs. Swiss-Prot
Match: sp|Q96G74|OTUD5_HUMAN (OTU domain-containing protein 5 OS=Homo sapiens OX=9606 GN=OTUD5 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-09
Identity = 28/102 (27.45%), Postives = 57/102 (55.88%), Query Frame = 0


Query: 184 FVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEK 243
           F+ +++K DG C FRA++DQ++G  + H++VR++ ++ L  + + +  YV   +  Y+ +
Sbjct: 213 FIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 272

Query: 244 MSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSF 286
                  G+H+ +QA A+ Y   + V      T  +E + +F
Sbjct: 273 KRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTF 314

[Close]

BLAST of Carg10422 vs. Swiss-Prot
Match: sp|Q7ZX21|OTU5A_XENLA (OTU domain-containing protein 5-A OS=Xenopus laevis OX=8355 GN=otud5-a PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 4.8e-09
Identity = 29/102 (28.43%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 165 IDEVTSDHQRLLDRLKVYD---FVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQ 224
           +D  T++ Q L     + D   F+ +++K DG C FRA++DQ++G  + H++VR++ ++ 
Sbjct: 144 LDPDTAEQQELCFEKTLSDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDY 203

Query: 225 LKSHREIYEGYVPMAYDDYLEKMSMTGEWGDHVTLQAAADWY 264
           L  + + +  YV   +  Y+ +       G+H+ +QA A+ Y
Sbjct: 204 LMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMY 245

[Close]

BLAST of Carg10422 vs. Swiss-Prot
Match: sp|Q640H3|OTU5B_XENLA (OTU domain-containing protein 5-B OS=Xenopus laevis OX=8355 GN=otud5-b PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-08
Identity = 24/80 (30.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 184 FVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEK 243
           F+ +++K DG C FRA++DQ++G  + H++VR++ ++ L  + + +  YV   +  Y+ +
Sbjct: 171 FIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 230

Query: 244 MSMTGEWGDHVTLQAAADWY 264
                  G+H+ +QA A+ Y
Sbjct: 231 KRKNNCHGNHIEMQAMAEMY 250

[Close]

BLAST of Carg10422 vs. Swiss-Prot
Match: sp|Q3U2S4|OTUD5_MOUSE (OTU domain-containing protein 5 OS=Mus musculus OX=10090 GN=Otud5 PE=1 SV=2)

HSP 1 Score: 61.6 bits (148), Expect = 1.8e-08
Identity = 24/80 (30.00%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 184 FVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYDDYLEK 243
           F+ +++K DG C FRA++DQ++G  + H++VR++ ++ L  + + +  YV   +  Y+ +
Sbjct: 213 FIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINR 272

Query: 244 MSMTGEWGDHVTLQAAADWY 264
                  G+H+ +QA A+ Y
Sbjct: 273 KRKNNCHGNHIEMQAMAEMY 292

[Close]

BLAST of Carg10422 vs. TrEMBL
Match: tr|A0A1S4E3S8|A0A1S4E3S8_CUCME (RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=4 SV=1)

HSP 1 Score: 542.3 bits (1396), Expect = 7.1e-151
Identity = 261/295 (88.47%), Postives = 277/295 (93.90%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSS----YSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 60
           MVMNDYDSDAI WGLR FNGD +    YS+EY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 61  NDEIIAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVE 120
           NDEIIAHTLQEEFSQLEIAEASGYSN+EDPS ASK+ LGW+NPSSR Y SENDS+ED VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKYSSENDSVEDEVE 120

Query: 121 TVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLL 180
           TVE SSSCSSPGQED+YYP+GHD+QVDW+MDQ+IPAPHVPRINGEIPSIDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMA 240
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTS+RHKLVRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 241 YDDYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 292
           YDDYLEKMSM+GEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILP+FQKK+QV
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPNFQKKKQV 295

[Close]

BLAST of Carg10422 vs. TrEMBL
Match: tr|A0A1S4E4I4|A0A1S4E4I4_CUCME (RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500810 PE=4 SV=1)

HSP 1 Score: 534.6 bits (1376), Expect = 1.5e-148
Identity = 259/295 (87.80%), Postives = 276/295 (93.56%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSS----YSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVE 60
           MVMNDYDSDAI WGLR FNGD +    YS+EY P  AQ DVNFYEHYYGNHCNNEVN+VE
Sbjct: 1   MVMNDYDSDAIRWGLRFFNGDLNGDMPYSTEYLPVTAQQDVNFYEHYYGNHCNNEVNNVE 60

Query: 61  NDEIIAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIEDVVE 120
           NDEIIAHTLQEEFSQLEIAEASGYSN+EDPS ASK+ LGW+NPSSR Y  +NDS+ED VE
Sbjct: 61  NDEIIAHTLQEEFSQLEIAEASGYSNVEDPSHASKFALGWNNPSSRKY--KNDSVEDEVE 120

Query: 121 TVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLL 180
           TVE SSSCSSPGQED+YYP+GHD+QVDW+MDQ+IPAPHVPRINGEIPSIDEVTSDHQRLL
Sbjct: 121 TVEPSSSCSSPGQEDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDHQRLL 180

Query: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMA 240
           DRLKVYDFVERKVKGDGNCQFRALSDQLFGTS+RHKLVRENVVNQLKSHREIYEGYVPM 
Sbjct: 181 DRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVNQLKSHREIYEGYVPMP 240

Query: 241 YDDYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 292
           YDDYLEKMSM+GEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILP+FQKK+QV
Sbjct: 241 YDDYLEKMSMSGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPNFQKKKQV 293

[Close]

BLAST of Carg10422 vs. TrEMBL
Match: tr|A0A0A0KIE6|A0A0A0KIE6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446380 PE=4 SV=1)

HSP 1 Score: 459.1 bits (1180), Expect = 7.9e-126
Identity = 231/298 (77.52%), Postives = 245/298 (82.21%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGD--------SSYSSEYFPDMAQHDVNFYEHYYGNHCNNEV 60
           MVMNDYDSDAI WGLR FNGD                                       
Sbjct: 34  MVMNDYDSDAIRWGLRFFNGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 93

Query: 61  NHVENDEIIAHTLQEEFSQLEIAEASGYSNIEDPSQASKYELGWDNPSSRNYGSENDSIE 120
                 EIIAHTLQEEFSQLEIAEASGYSN+EDPSQASK+ LGW+NPSSRNY SENDS+E
Sbjct: 94  XXXXXXEIIAHTLQEEFSQLEIAEASGYSNVEDPSQASKFALGWNNPSSRNYSSENDSVE 153

Query: 121 DVVETVEASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDH 180
           D VETVE SSSCSSPGQ D+YYP+GHD+QVDW+MDQ+IPAPHVPRINGEIPSIDEVTSDH
Sbjct: 154 DEVETVEPSSSCSSPGQGDNYYPYGHDNQVDWRMDQMIPAPHVPRINGEIPSIDEVTSDH 213

Query: 181 QRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGY 240
           QRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTS+RHKLVRENVV+QLKSHREIYEGY
Sbjct: 214 QRLLDRLKVYDFVERKVKGDGNCQFRALSDQLFGTSDRHKLVRENVVSQLKSHREIYEGY 273

Query: 241 VPMAYDDYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQ 291
           VPM YDDYLEKMSM+GEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILP+FQKK+Q
Sbjct: 274 VPMPYDDYLEKMSMSGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPNFQKKKQ 331

[Close]

BLAST of Carg10422 vs. TrEMBL
Match: tr|A0A0A0LAZ3|A0A0A0LAZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740120 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.0e-93
Identity = 180/293 (61.43%), Postives = 219/293 (74.74%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MV + Y+SD I WGLRLF+GDS ++S Y+ +M   D ++  +YY +H N E   VENDEI
Sbjct: 1   MVPSGYESDVIQWGLRLFDGDSVFNSGYYGEMTAVDDHYPGNYYRDHYNLEHTCVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYS-NIEDPSQASKYELGWDNPSSR-NYGSENDSIEDVVETV 120
           IA TLQE  S L I ++S      ED  +   Y   W+NP  R N  SE+ S+E+ +ET+
Sbjct: 61  IARTLQENLSHLSITDSSRCPFEREDQLRGPIYTTAWNNPFPRSNNSSESISVEEDIETM 120

Query: 121 EASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDR 180
           + SSSCSSPG ED  Y +  D +  W+ +QVIP PHVPRINGEIPS+DE  SDH+RLLDR
Sbjct: 121 DPSSSCSSPGDEDFSYLYALDGEELWRFNQVIPVPHVPRINGEIPSVDEAASDHERLLDR 180

Query: 181 LKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYD 240
           L+VYDFVERKV+GDGNCQFRALSDQL+GT + H+LVR+ VVNQL SH EIYEGYVPMAYD
Sbjct: 181 LQVYDFVERKVQGDGNCQFRALSDQLYGTPDNHELVRQKVVNQLMSHPEIYEGYVPMAYD 240

Query: 241 DYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 292
           +YLEKMS  GEWGDHVTLQAA D Y V+IFV+TSFK+ CCIEILP+ QK + V
Sbjct: 241 EYLEKMSRNGEWGDHVTLQAAVDSYDVQIFVLTSFKDNCCIEILPNSQKTKGV 293

[Close]

BLAST of Carg10422 vs. TrEMBL
Match: tr|A0A1S3B6A5|A0A1S3B6A5_CUCME (uncharacterized protein LOC103486490 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486490 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 5.2e-93
Identity = 179/293 (61.09%), Postives = 218/293 (74.40%), Query Frame = 0


Query: 1   MVMNDYDSDAISWGLRLFNGDSSYSSEYFPDMAQHDVNFYEHYYGNHCNNEVNHVENDEI 60
           MV + Y+SD I WGLRLF+GDS ++S Y+ +M   D  +  +YY +H N E   VENDEI
Sbjct: 1   MVPSGYESDVIQWGLRLFDGDSVFNSGYYGEMTAVDDYYPGNYYRDHYNLEHTCVENDEI 60

Query: 61  IAHTLQEEFSQLEIAEASGYS-NIEDPSQASKYELGWDNPSSR-NYGSENDSIEDVVETV 120
           IA TLQE  S L I ++S      ED  +   Y   W+NP  R N  SE+ S+E+ +ET+
Sbjct: 61  IARTLQENLSHLSITDSSRCPFEREDQLRGPIYTTAWNNPFPRNNNSSESISVEEDIETM 120

Query: 121 EASSSCSSPGQEDSYYPHGHDSQVDWKMDQVIPAPHVPRINGEIPSIDEVTSDHQRLLDR 180
           + SSSCSSPG ED  Y +  D +  W+ +QVIP PHVPRINGEIPS+DE  SDH+RLLDR
Sbjct: 121 DPSSSCSSPGDEDFSYLYALDGEELWRFNQVIPVPHVPRINGEIPSVDEAASDHERLLDR 180

Query: 181 LKVYDFVERKVKGDGNCQFRALSDQLFGTSNRHKLVRENVVNQLKSHREIYEGYVPMAYD 240
           L+VYDFVERKV+GDGNCQFRALSDQL+GT + H+LVR+ VVNQL +H EIYEGYVPMAYD
Sbjct: 181 LQVYDFVERKVQGDGNCQFRALSDQLYGTPDNHELVRQKVVNQLMAHPEIYEGYVPMAYD 240

Query: 241 DYLEKMSMTGEWGDHVTLQAAADWYGVKIFVMTSFKETCCIEILPSFQKKRQV 292
           +YLEKMS  GEWGDHVTLQAA D Y V+IFV+TSFK+ CCIEILP+ QK + V
Sbjct: 241 EYLEKMSRNGEWGDHVTLQAAVDSYDVQIFVLTSFKDNCCIEILPNSQKTKGV 293

The following BLAST results are available for this feature:

BLAST of Carg10422 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926086.1	1.1e-168	100.00	RNA polymerase sigma factor sigF, chloroplastic-like [Cucurbita moschata]	[more]
XP_023543698.1	1.1e-168	100.00	RNA polymerase sigma factor sigF, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022978801.1	5.7e-168	99.66	RNA polymerase sigma factor sigF, chloroplastic [Cucurbita maxima]	[more]
XP_016902883.1	1.1e-150	88.47	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Cucumis m...	[more]
XP_016902885.1	2.2e-148	87.80	PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Cucumis m...	[more]

BLAST of Carg10422 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03330.1	2.1e-60	46.40	Cysteine proteinases superfamily protein	[more]
AT5G04250.1	5.3e-59	42.63	Cysteine proteinases superfamily protein	[more]
AT3G02070.1	5.1e-46	48.21	Cysteine proteinases superfamily protein	[more]
AT3G22260.2	2.1e-39	57.25	Cysteine proteinases superfamily protein	[more]
AT2G39320.1	3.6e-15	43.00	Cysteine proteinases superfamily protein	[more]

BLAST of Carg10422 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q08BW0\|OTU5A_DANRE	1.6e-09	31.52	OTU domain-containing protein 5-A OS=Danio rerio OX=7955 GN=otud5a PE=2 SV=1	[more]
sp\|Q96G74\|OTUD5_HUMAN	1.6e-09	27.45	OTU domain-containing protein 5 OS=Homo sapiens OX=9606 GN=OTUD5 PE=1 SV=1	[more]
sp\|Q7ZX21\|OTU5A_XENLA	4.8e-09	28.43	OTU domain-containing protein 5-A OS=Xenopus laevis OX=8355 GN=otud5-a PE=2 SV=1	[more]
sp\|Q640H3\|OTU5B_XENLA	1.8e-08	30.00	OTU domain-containing protein 5-B OS=Xenopus laevis OX=8355 GN=otud5-b PE=2 SV=1	[more]
sp\|Q3U2S4\|OTUD5_MOUSE	1.8e-08	30.00	OTU domain-containing protein 5 OS=Mus musculus OX=10090 GN=Otud5 PE=1 SV=2	[more]

BLAST of Carg10422 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E3S8\|A0A1S4E3S8_CUCME	7.1e-151	88.47	RNA polymerase sigma factor sigF, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
tr\|A0A1S4E4I4\|A0A1S4E4I4_CUCME	1.5e-148	87.80	RNA polymerase sigma factor sigF, chloroplastic isoform X2 OS=Cucumis melo OX=36...	[more]
tr\|A0A0A0KIE6\|A0A0A0KIE6_CUCSA	7.9e-126	77.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G446380 PE=4 SV=1	[more]
tr\|A0A0A0LAZ3\|A0A0A0LAZ3_CUCSA	1.0e-93	61.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G740120 PE=4 SV=1	[more]
tr\|A0A1S3B6A5\|A0A1S3B6A5_CUCME	5.2e-93	61.09	uncharacterized protein LOC103486490 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038765	Papain_like_cys_pep_sf
IPR003323	OTU_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg10422-RA	Carg10422-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003323	OTU domain	PFAM	PF02338	OTU	coord: 190..276 e-value: 9.5E-12 score: 45.4
IPR003323	OTU domain	PROSITE	PS50802	OTU	coord: 184..287 score: 13.254
None	No IPR available	GENE3D	G3DSA:3.90.70.80		coord: 166..304 e-value: 1.7E-33 score: 117.5
None	No IPR available	PANTHER	PTHR12419	OTU DOMAIN CONTAINING PROTEIN	coord: 37..291
None	No IPR available	PANTHER	PTHR12419:SF19	SUBFAMILY NOT NAMED	coord: 37..291
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	SSF54001	Cysteine proteinases	coord: 171..280

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg10422	Cla018311	Watermelon (97103) v1	carwmB0227
Carg10422	Csa6G446380	Cucumber (Chinese Long) v2	carcuB0267
Carg10422	MELO3C024458	Melon (DHL92) v3.5.1	carmeB0242
Carg10422	ClCG04G009220	Watermelon (Charleston Gray)	carwcgB0232
Carg10422	CSPI06G24610	Wild cucumber (PI 183967)	carcpiB0271
Carg10422	Cucsa.124590	Cucumber (Gy14) v1	carcgyB0281
Carg10422	CmaCh07G009040	Cucurbita maxima (Rimu)	carcmaB0335
Carg10422	CmaCh03G012210	Cucurbita maxima (Rimu)	carcmaB0333
Carg10422	CmoCh03G012180	Cucurbita moschata (Rifu)	carcmoB0336
Carg10422	CmoCh07G009390	Cucurbita moschata (Rifu)	carcmoB0338
Carg10422	Lsi01G013160	Bottle gourd (USVL1VR-Ls)	carlsiB214
Carg10422	Cp4.1LG08g10920	Cucurbita pepo (Zucchini)	carcpeB0340
Carg10422	Cp4.1LG19g03960	Cucurbita pepo (Zucchini)	carcpeB0338
Carg10422	Cp4.1LG10g04650	Cucurbita pepo (Zucchini)	carcpeB0337
Carg10422	CsGy6G024020	Cucumber (Gy14) v2	carcgybB0255
Carg10422	CsaV3_6G039810	Cucumber (Chinese Long) v3	carcucB0270
Carg10422	Cla97C10G203390	Watermelon (97103) v2	carwmbB0241
Carg10422	Cla97C04G075940	Watermelon (97103) v2	carwmbB0244
Carg10422	Bhi11G001772	Wax gourd	carwgoB0302
Carg10422	Bhi03G001211	Wax gourd	carwgoB0306

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg10422	Melon (DHL92) v3.6.1	carmedB0250