Carg05398 (gene) Silver-seed gourd

NameCarg05398
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionribonuclease P protein subunit p25-like protein
LocationCucurbita_argyrosperma_scaffold_046 : 74344 .. 77369 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCTTTCCCCTTCCTCTTTCCTTTAGCTCAGAACCACACTCTCAAGCACTTCACTGTCAAGCTTTCTCCTCTTTCCCGTTAGGGTTTCTGTCTTCTTCTTCTTCGTCTTCCTCTTCCCTCTCTCGCTTCCCGCCTTGCTGAAGAACCGCCATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATCACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCTACTCTACTTCAGGTATCATTTCACTGTTTTTGATATTGTTTACATCAGCTATTGTATCTCATTTCATTTTTTCTTTTTGGTGTGTTCGTCTTAATCTTTCTGTTTATACGTTGCGTCTGTTGTTTTTTGAACAATGAATCTATCTTATGACGTTAGGTTTGTGGATGCACTGGACTATTAGAAGATTGTCTTGGTTTTGGTTATTTTTTCTTAATGCTAGCCGACATTTATTGATTTGGTACACTTTCTGGTATATTGATTTCGTTTCTTGTACTTGCGAATTTTGAGGAATAGTTGCTCGCTGGCTGATACTCTGCCGTGTATGCATTGTATGTGGAAGCGTCTGTAAGCTTAATGCACGAGCTATGGTACTTCTTAACATGCGATAGCTCGTGAAATGTAATCTGTTCTGTTGATTGTCTACATTCCTTGTAGCTTTTTCTTCTAGCCTATCGTGAATTCTAGTTATATCGATATTTTTTCACTTTACCATATGAAAAGAATAAAGATACGGTTGAATTTATGCTTTATAGTTTATCTTGTATTCTCAGATCGAGTAATTACGCTAATGCAGTGATCATGTGGAGCTTGGTGTTACTGTATTATGTTGACGTGATGTTTGGCTCAGGTTTCTACTATTTGTACACATTTTTTAATATATAAATTTACCATCAAGATACAGCTACGTACTTCTCTTTCTTATAAAAAGAATCAAGTGCACTAGAGTTTATGGTTTACAATGTACTACCAGATCTATTCATTATGCTAATACAATGATCATGGCCAAATTGTCATTTCCTTATTCTTGGCTCACGGGTTTTTTTCAACTTGTTCGTACTATTTTTTTATTTGAAGAAGATAATTATTGATGTTATTCATGGGATCAAGTTTTTGTTATCTATTCAATTAGTAGATCGATTATTTCCTTATTTCTAATCATGCTGGCTAACTTGAGCATAGCTCAACTAGTCATTCATTTGGAGAGAATGAATTCCAGATCTTGGCTTTCGAAGTCCTCTGAGGGCATTTGCAGGAGTTCTTTTTTTAGGATTCTTTGTATACCTTCTCCCCTTCAAGGATCCACTGTGTTTTTTTAGGATTCTTTTTTTTTTTATCTGGAAAGTTTTGCATGGGAGAGTGTATACTGAAGACTGTATCCAAAGGCTTTCCTCCATGGTGTTGTGGCCTCAATAGTGTGTCATTTGTAGAAGATGGGGTGAGGAACTTGACCATTTACTTTACTTGACCCTTGGACTTTTTCTTGCTCGTAATCGAGGTTGTTGTTCGATGTTTGAGGATGTGTTCTTGAATCCTTCTTGTCATGAAAAGAAAGGGTTCTTTGGCAGTCTTATTTTTTGCTCTGTTGTAGGGCATTTGACTTGAGACTTGAGAGAAATAGTAGAATTTTTCGTGGAGTGGAGTGATTTGGGGAGAACTTTTGGATTACGATTAGGCTTAATGTCTCCCTGTGGATCTGCCCTATTGTTTGTGGGCTTGTTTTTTGTTCGCCCTTGTATATCCCTATAATGAAAGCTTGGTTTCTTATAAAAAAAGGTAAAAAAATTAACTATTCATTTGTGTATTGGATTACTAAACTAGTGGCTGGGATTGTCATCTGGGCTAACACCCGCTAGTGCCAAGCCTATTTATGCAAACCAAATTTAGAGAATGATTCAAGCCAGTCTTTCAACTTTTGGTTTTCAAACAAATAGAAACATAACAGATAACTATCATTTTCAATAAAAAAAATTGCTTAAAACAAACGAGAGAGACAGCCCACTTCTCAAGAGAACATTAAATCGATTAAGAGAGGAAGAGAGCTTGGGAGAGATAGTGCAAACATCCTCCCTTTTCAGGAGAGAGAGGAAGAGGAGAATGCTGATTTGAGTGATGAGAGAGGCTTTGTATAGTGTTTGACAGCAAGACCAAGTCCACCATCAAGCATGCTGAGTTTGAGTTAGAGGGTAAAAAGTTCCCAGTGGTATGGCTTTCGAGTGTCGGTTTAGTATAAAATGTGGATTTTTTATGTTAGAAAATCGTGGTTCCTAATAGCCTATTTATAAATTCTCTCTCTCTCTCTCTAATAAAAAGGTTTTTTCTCCCTTGTTTATTCATGTTTCTAAGCATGTGCTTACTGTCGGCTGAGAATGAATCTGTTCTATTTTGGTTTAATATATCACGTTTTCACTTTTTATAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAACAGTTTCCATTGCAGAAATTTTAAAGGTTTGAGTCCTTTACATTCTGCAACTGTGCATGTGTAACTTATTTTATAATTAACATGCCAGTTTCATTCTGAAACAGAAGAGAACTCCACAATTGCATCAAGAAACTTCCATCAGCTCAGTAAGCATAATTGATGTATGGGAGCCTATTGAAGAAGGTCTTGTACCGTAAGTTTTAATCTCTAAAAATCTCTGTTAATTGCCTGATGACGTCCTATGCAATTACTGCTGGTTGGTTTCTTTATGCTCATAGTCACGACTTAGCGTTGTTTGGATTGGTACTCTTTAGTTTGCAATTGCAGATTTTCTTACTATTATTGCTGTGGGCATGTAGCTTTAGCATACTCTTCTGCAGATATTTAAGTAATAATGTCTGACATATGATGCAGTGTGGAGATGACTCGACACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAAAGATTCTCCTGGGTAAGATGTGAAAGTCTAATCTG

mRNA sequence

CTCCTTTCCCCTTCCTCTTTCCTTTAGCTCAGAACCACACTCTCAAGCACTTCACTGTCAAGCTTTCTCCTCTTTCCCGTTAGGGTTTCTGTCTTCTTCTTCTTCGTCTTCCTCTTCCCTCTCTCGCTTCCCGCCTTGCTGAAGAACCGCCATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATCACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCTACTCTACTTCAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAACAGTTTCCATTGCAGAAATTTTAAAGTGTGGAGATGACTCGACACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAAAGATTCTCCTGGGTAAGATGTGAAAGTCTAATCTG

Coding sequence (CDS)

ATGGATAGGTACCAGAAGGTGGAGAAGCCTAAACCTGAATCGCCGATAAACGAAAATGAAATCCGCATCACAAGTCAAGGCGCTATTCGAAACTACATCACTTATGCTTCTACTCTACTTCAGGACAAACGTGTTAGAGAGATAGTGTTGAAAGCCATGGGGCAGGCAATCAGTAAAACAGTTTCCATTGCAGAAATTTTAAAGTGTGGAGATGACTCGACACGTCTCAATGATATCAATTACCCTGTCAAATCGAGAACTAAATAA

Protein sequence

MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKTVSIAEILKCGDDSTRLNDINYPVKSRTK
BLAST of Carg05398 vs. NCBI nr
Match: XP_022963612.1 (protein FAM98A isoform X3 [Cucurbita moschata])

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          VSIAEILK
Sbjct: 61 VSIAEILK 68

BLAST of Carg05398 vs. NCBI nr
Match: XP_023553962.1 (protein argonaute 18-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130.6 bits (327), Expect = 2.7e-27
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          VSIAEILK
Sbjct: 61 VSIAEILK 68

BLAST of Carg05398 vs. NCBI nr
Match: XP_022967311.1 (protein FAM98A-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-26
Identity = 66/68 (97.06%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESP+N+NEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT
Sbjct: 1  MDRYQKVEKPKPESPLNKNEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          VSIAEILK
Sbjct: 61 VSIAEILK 68

BLAST of Carg05398 vs. NCBI nr
Match: XP_022930955.1 (glycine-rich RNA-binding protein 10-like [Cucurbita moschata])

HSP 1 Score: 126.7 bits (317), Expect = 3.9e-26
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61 VSIAEILK 69
          V+IAEILK
Sbjct: 61 VAIAEILK 68

BLAST of Carg05398 vs. NCBI nr
Match: XP_023533405.1 (keratin, type I cytoskeletal 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 126.7 bits (317), Expect = 3.9e-26
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISK 
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKG 60

Query: 61 VSIAEILK 69
          V+IAEILK
Sbjct: 61 VAIAEILK 68

BLAST of Carg05398 vs. TAIR10
Match: AT3G07030.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 110.9 bits (276), Expect = 4.0e-25
Identity = 55/68 (80.88%), Postives = 65/68 (95.59%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQ+V KPKPESPINENEIRITS+G IRNYI+YA++LLQ+K V++IVLKAMGQAISKT
Sbjct: 1  MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 61 VSIAEILK 69
          V+I+EILK
Sbjct: 61 VAISEILK 68

BLAST of Carg05398 vs. TAIR10
Match: AT1G76010.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 94.0 bits (232), Expect = 5.0e-20
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MD+YQ+V KPK ++PI+ NEIRITSQG  RNYITYA TLLQDK   E+V KAMG+AI+KT
Sbjct: 1  MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query: 61 VSIAEILK 69
          V+I E++K
Sbjct: 61 VTIVELIK 68

BLAST of Carg05398 vs. TAIR10
Match: AT1G20220.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 90.5 bits (223), Expect = 5.6e-19
Identity = 42/68 (61.76%), Postives = 56/68 (82.35%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MD+YQ+VEKPK ++PI ENEIRITS G  RNYITYA  LLQ+ +  E++ KAMG+AI+K+
Sbjct: 1  MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query: 61 VSIAEILK 69
          V+I E++K
Sbjct: 61 VTIVELIK 68

BLAST of Carg05398 vs. TrEMBL
Match: tr|A0A1S3CN30|A0A1S3CN30_CUCME (protein FAM98A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502782 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK 
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61 VSIAEILK 69
          V+IAEILK
Sbjct: 61 VAIAEILK 68

BLAST of Carg05398 vs. TrEMBL
Match: tr|A0A1S3C001|A0A1S3C001_CUCME (protein FAM98A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494907 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK 
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61 VSIAEILK 69
          V+IAEILK
Sbjct: 61 VAIAEILK 68

BLAST of Carg05398 vs. TrEMBL
Match: tr|A0A1S3CMY8|A0A1S3CMY8_CUCME (protein FAM98A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502782 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK 
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61 VSIAEILK 69
          V+IAEILK
Sbjct: 61 VAIAEILK 68

BLAST of Carg05398 vs. TrEMBL
Match: tr|A0A1S3BYB0|A0A1S3BYB0_CUCME (protein FAM98A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494907 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK 
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61 VSIAEILK 69
          V+IAEILK
Sbjct: 61 VAIAEILK 68

BLAST of Carg05398 vs. TrEMBL
Match: tr|A0A0A0LE30|A0A0A0LE30_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G625120 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-26
Identity = 65/68 (95.59%), Postives = 67/68 (98.53%), Query Frame = 0

Query: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQDKRVREIVLKAMGQAISKT 60
          MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQ+KRVREIVLKAMGQAISK 
Sbjct: 1  MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61 VSIAEILK 69
          V+IAEILK
Sbjct: 61 VAIAEILK 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022963612.12.7e-27100.00protein FAM98A isoform X3 [Cucurbita moschata][more]
XP_023553962.12.7e-27100.00protein argonaute 18-like isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022967311.11.3e-2697.06protein FAM98A-like isoform X1 [Cucurbita maxima][more]
XP_022930955.13.9e-2697.06glycine-rich RNA-binding protein 10-like [Cucurbita moschata][more]
XP_023533405.13.9e-2697.06keratin, type I cytoskeletal 9-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT3G07030.14.0e-2580.88Alba DNA/RNA-binding protein[more]
AT1G76010.15.0e-2067.65Alba DNA/RNA-binding protein[more]
AT1G20220.15.6e-1961.76Alba DNA/RNA-binding protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CN30|A0A1S3CN30_CUCME4.3e-2695.59protein FAM98A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502782 PE=4 SV=1[more]
tr|A0A1S3C001|A0A1S3C001_CUCME4.3e-2695.59protein FAM98A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494907 PE=4 SV=1[more]
tr|A0A1S3CMY8|A0A1S3CMY8_CUCME4.3e-2695.59protein FAM98A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502782 PE=4 SV=1[more]
tr|A0A1S3BYB0|A0A1S3BYB0_CUCME4.3e-2695.59protein FAM98A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494907 PE=4 SV=1[more]
tr|A0A0A0LE30|A0A0A0LE30_CUCSA4.3e-2695.59Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G625120 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR036882Alba-like_dom_sf
IPR002775DNA/RNA-bd_Alba-like
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05398-RACarg05398-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 19..68
e-value: 3.7E-16
score: 58.6
IPR036882Alba-like domain superfamilyGENE3DG3DSA:3.30.110.20coord: 14..85
e-value: 3.0E-19
score: 70.7
IPR036882Alba-like domain superfamilySUPERFAMILYSSF82704AlbA-likecoord: 15..68
NoneNo IPR availablePANTHERPTHR13516RIBONUCLEASE P SUBUNIT P25coord: 1..68
NoneNo IPR availablePANTHERPTHR13516:SF3ALBA DNA/RNA-BINDING PROTEINcoord: 1..68