CSPI07G01700 (gene) Wild cucumber (PI 183967)

NameCSPI07G01700
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionNodule inception family protein
LocationChr7 : 1502425 .. 1502854 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGCTGCTTGAACTTCCTGTTTTTGCAGTTTGTTCAACTTCTCTAAAGTGGATATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATGGTGAGAGACCATCAGAGGCAATAAACTATCAAGTTGGCAATGGCTCGTTCAGCCATCGACCCCATGCAAAGTCCCCATTCTCTTCATGTACTCAGACTTCTGGTTCAGGCAGTTAGTGCCCTACCGGAGCAAGGCAACATAATCCAATGGATTTTTCAGCAAACTTTAAAAAGCTCAATT

mRNA sequence

ATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATGGTGAGAGACCATCAGAGGCAATAA

Coding sequence (CDS)

ATGCAGGCAACATGGATAACAAGGTGCCCTTCCAGAAAGATCAAGAAAGTAGGTCATTATTCTCTCAGCAAACTCCAGCTCGTGGTCGACTCAGTTCAAGGTGCTGATGGTTCGATACAGATTGGGACTTTCTATGAAAGCTTCCCACAATTGAACAATCCCAGTTTTCCTGATACTGACCATTGTTCATCCACGATGGTGAGAGACCATCAGAGGCAATAA
BLAST of CSPI07G01700 vs. Swiss-Prot
Match: NLP2_ARATH (Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3)

HSP 1 Score: 74.3 bits (181), Expect = 6.1e-13
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDT 60
           ITR PSRKIKKVGH SL KLQLV+DSVQG  GSIQ+ +FY SFP+L++P    T
Sbjct: 685 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSPHMSGT 737

BLAST of CSPI07G01700 vs. Swiss-Prot
Match: NLP1_ARATH (Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.0e-13
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I R PSRKIKKVGH SL KLQLV+DSVQGA GSIQ+ +FY SFP+LN+P+
Sbjct: 645 IMRWPSRKIKKVGH-SLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPN 693

BLAST of CSPI07G01700 vs. Swiss-Prot
Match: NLP3_ARATH (Protein NLP3 OS=Arabidopsis thaliana GN=NLP3 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.9e-10
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I+R PSRKIKKVGH SL KLQ+V+DSV+G  GS+ + +FY SFPQL + S
Sbjct: 535 ISRWPSRKIKKVGH-SLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSS 583

BLAST of CSPI07G01700 vs. Swiss-Prot
Match: NLP4_ARATH (Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-09
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I R PSRKIKKVGH SL K+Q V+DSVQG  G + IG+FY +FP L + S   +    +T
Sbjct: 595 IQRWPSRKIKKVGH-SLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQSQEPSQQAKTT 653

BLAST of CSPI07G01700 vs. Swiss-Prot
Match: NLP1_ORYSJ (Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.6e-08
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESF 49
           I R PSRKIKKVGH SL KLQ+V+DSV G +G++Q+ + YE+F
Sbjct: 659 INRWPSRKIKKVGH-SLKKLQMVIDSVHGPEGTVQLSSLYENF 700

BLAST of CSPI07G01700 vs. TrEMBL
Match: A0A0A0K676_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024110 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.5e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1

Query: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
          MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD
Sbjct: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60

Query: 61 HCSSTM 67
          HCSSTM
Sbjct: 61 HCSSTM 66

BLAST of CSPI07G01700 vs. TrEMBL
Match: M5VGP2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018195mg PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.1e-16
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN P FP +   SS 
Sbjct: 599 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSSM 658

Query: 66  MVRDHQRQ 74
            + DH +Q
Sbjct: 659 NMSDHSKQ 665

BLAST of CSPI07G01700 vs. TrEMBL
Match: T1SBU4_DATGL (Nodule inception protein 1 OS=Datisca glomerata GN=NIN1 PE=2 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.7e-15
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I+R PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY+SFP+L++P+F  T   +S 
Sbjct: 634 ISRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYKSFPELSSPTFAGTSPFTSL 693

Query: 66  MVRDHQRQ 74
            + DHQ Q
Sbjct: 694 NMTDHQAQ 700

BLAST of CSPI07G01700 vs. TrEMBL
Match: V4U8W2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027765mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 7.8e-15
Identity = 43/65 (66.15%), Postives = 52/65 (80.00%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY +FP LN+P+F  +   SS 
Sbjct: 664 ITRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYTTFPDLNSPNFSGSGTFSSM 723

Query: 66  MVRDH 71
            + DH
Sbjct: 724 KINDH 727

BLAST of CSPI07G01700 vs. TrEMBL
Match: A0A061DXA4_THECC (Plant regulator RWP-RK family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_006453 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-14
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY SFP+L++P+F      SS 
Sbjct: 671 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIQIGSFYSSFPELSSPNFSGNGPSSSL 730

Query: 66  MVRDHQR 73
            + +H +
Sbjct: 731 KISNHSK 736

BLAST of CSPI07G01700 vs. TAIR10
Match: AT4G35270.1 (AT4G35270.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 74.3 bits (181), Expect = 3.5e-14
Identity = 37/54 (68.52%), Postives = 43/54 (79.63%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDT 60
           ITR PSRKIKKVGH SL KLQLV+DSVQG  GSIQ+ +FY SFP+L++P    T
Sbjct: 685 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGVQGSIQLDSFYTSFPELSSPHMSGT 737

BLAST of CSPI07G01700 vs. TAIR10
Match: AT2G17150.1 (AT2G17150.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 73.9 bits (180), Expect = 4.5e-14
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I R PSRKIKKVGH SL KLQLV+DSVQGA GSIQ+ +FY SFP+LN+P+
Sbjct: 645 IMRWPSRKIKKVGH-SLKKLQLVMDSVQGAQGSIQLDSFYTSFPELNSPN 693

BLAST of CSPI07G01700 vs. TAIR10
Match: AT4G38340.1 (AT4G38340.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 65.5 bits (158), Expect = 1.6e-11
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPS 56
           I+R PSRKIKKVGH SL KLQ+V+DSV+G  GS+ + +FY SFPQL + S
Sbjct: 535 ISRWPSRKIKKVGH-SLRKLQVVMDSVEGVQGSLHLASFYSSFPQLQSSS 583

BLAST of CSPI07G01700 vs. TAIR10
Match: AT1G20640.1 (AT1G20640.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I R PSRKIKKVGH SL K+Q V+DSVQG  G + IG+FY +FP L + S   +    +T
Sbjct: 595 IQRWPSRKIKKVGH-SLQKIQRVIDSVQGVSGPLPIGSFYANFPNLVSQSQEPSQQAKTT 653

BLAST of CSPI07G01700 vs. TAIR10
Match: AT1G76350.1 (AT1G76350.1 Plant regulator RWP-RK family protein)

HSP 1 Score: 56.6 bits (135), Expect = 7.5e-09
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADG-SIQIGTFYESFPQL 52
           I R PSRKIKKVGH SL K+Q V+DSV+G  G  + IG+FY SFP L
Sbjct: 586 IQRWPSRKIKKVGH-SLQKIQRVIDSVEGVSGHHLPIGSFYASFPNL 631

BLAST of CSPI07G01700 vs. NCBI nr
Match: gi|659094517|ref|XP_008448104.1| (PREDICTED: zinc finger protein ZAT3 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 7.7e-32
Identity = 67/73 (91.78%), Postives = 69/73 (94.52%), Query Frame = 1

Query: 1   MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
           MQATWITRCPS KIKKVGHYSLSKLQLV+DSVQGADGSIQIG FYESFPQLN PSFPDTD
Sbjct: 294 MQATWITRCPSGKIKKVGHYSLSKLQLVIDSVQGADGSIQIGPFYESFPQLNPPSFPDTD 353

Query: 61  HCSSTMVRDHQRQ 74
           HCSST +RDHQRQ
Sbjct: 354 HCSSTKMRDHQRQ 366

BLAST of CSPI07G01700 vs. NCBI nr
Match: gi|700188103|gb|KGN43336.1| (hypothetical protein Csa_7G024110 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-31
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1

Query: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60
          MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD
Sbjct: 1  MQATWITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTD 60

Query: 61 HCSSTM 67
          HCSSTM
Sbjct: 61 HCSSTM 66

BLAST of CSPI07G01700 vs. NCBI nr
Match: gi|595790583|ref|XP_007199040.1| (hypothetical protein PRUPE_ppa018195mg [Prunus persica])

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIKKVGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN P FP +   SS 
Sbjct: 599 ITRWPSRKIKKVGH-SLKKLQLVIDSVQGAEGAIHIGSFYSSFPELNFPKFPGSGQYSSM 658

Query: 66  MVRDHQRQ 74
            + DH +Q
Sbjct: 659 NMSDHSKQ 665

BLAST of CSPI07G01700 vs. NCBI nr
Match: gi|645260780|ref|XP_008235979.1| (PREDICTED: LOW QUALITY PROTEIN: protein NLP2-like [Prunus mume])

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-15
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           ITR PSRKIK VGH SL KLQLV+DSVQGA+G+I IG+FY SFP+LN+P FP +   SS 
Sbjct: 659 ITRWPSRKIKMVGH-SLKKLQLVIDSVQGAEGAIDIGSFYSSFPELNSPKFPGSGQYSSM 718

Query: 66  MVRDHQRQ 74
            + DH +Q
Sbjct: 719 NMSDHSKQ 725

BLAST of CSPI07G01700 vs. NCBI nr
Match: gi|526483237|gb|AGR88904.1| (nodule inception protein 1 [Datisca glomerata])

HSP 1 Score: 89.0 bits (219), Expect = 3.9e-15
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1

Query: 6   ITRCPSRKIKKVGHYSLSKLQLVVDSVQGADGSIQIGTFYESFPQLNNPSFPDTDHCSST 65
           I+R PSRKIKKVGH SL KLQLV+DSVQGA+G+IQIG+FY+SFP+L++P+F  T   +S 
Sbjct: 634 ISRWPSRKIKKVGH-SLRKLQLVIDSVQGAEGAIQIGSFYKSFPELSSPTFAGTSPFTSL 693

Query: 66  MVRDHQRQ 74
            + DHQ Q
Sbjct: 694 NMTDHQAQ 700

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
NLP2_ARATH6.1e-1368.52Protein NLP2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=3[more]
NLP1_ARATH8.0e-1374.00Protein NLP1 OS=Arabidopsis thaliana GN=NLP1 PE=2 SV=1[more]
NLP3_ARATH2.9e-1064.00Protein NLP3 OS=Arabidopsis thaliana GN=NLP3 PE=2 SV=1[more]
NLP4_ARATH2.4e-0953.33Protein NLP4 OS=Arabidopsis thaliana GN=NLP4 PE=2 SV=1[more]
NLP1_ORYSJ4.6e-0862.79Protein NLP1 OS=Oryza sativa subsp. japonica GN=NLP1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K676_CUCSA3.5e-31100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G024110 PE=4 SV=1[more]
M5VGP2_PRUPE7.1e-1666.18Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa018195mg PE=4 SV=1[more]
T1SBU4_DATGL2.7e-1564.71Nodule inception protein 1 OS=Datisca glomerata GN=NIN1 PE=2 SV=1[more]
V4U8W2_9ROSI7.8e-1566.15Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027765mg PE=4 SV=1[more]
A0A061DXA4_THECC1.7e-1462.69Plant regulator RWP-RK family protein, putative isoform 1 OS=Theobroma cacao GN=... [more]
Match NameE-valueIdentityDescription
AT4G35270.13.5e-1468.52 Plant regulator RWP-RK family protein[more]
AT2G17150.14.5e-1474.00 Plant regulator RWP-RK family protein[more]
AT4G38340.11.6e-1164.00 Plant regulator RWP-RK family protein[more]
AT1G20640.11.4e-1053.33 Plant regulator RWP-RK family protein[more]
AT1G76350.17.5e-0963.83 Plant regulator RWP-RK family protein[more]
Match NameE-valueIdentityDescription
gi|659094517|ref|XP_008448104.1|7.7e-3291.78PREDICTED: zinc finger protein ZAT3 [Cucumis melo][more]
gi|700188103|gb|KGN43336.1|5.0e-31100.00hypothetical protein Csa_7G024110 [Cucumis sativus][more]
gi|595790583|ref|XP_007199040.1|1.0e-1566.18hypothetical protein PRUPE_ppa018195mg [Prunus persica][more]
gi|645260780|ref|XP_008235979.1|1.7e-1564.71PREDICTED: LOW QUALITY PROTEIN: protein NLP2-like [Prunus mume][more]
gi|526483237|gb|AGR88904.1|3.9e-1564.71nodule inception protein 1 [Datisca glomerata][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI07G01700.1CSPI07G01700.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR32002FAMILY NOT NAMEDcoord: 6..73
score: 8.7
NoneNo IPR availablePANTHERPTHR32002:SF3PROTEIN NLP1-RELATEDcoord: 6..73
score: 8.7