CSPI04G23020 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G23020
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr4 : 21205318 .. 21205668 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAACCAAATAAGAGAGCCATGGCTAAAGCCATTATTGTAATGATAAAGTTCTTCTTCGTTTGCTTTATTACTGTAATCATTTTGCTGCCATTTTTGAGCTTTGGATCAGCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCAAGTGGCTTCATGGAAAGTGCTAAGGATGCATTAATGGCTAGTCTCCAAAGACAAGGTGGAAAGCCCTTTCAGGTGCAGCGAACCAGCCCTGGAGGACCCGATCAACACCATCATTAATGATCGGGGGAAGCCTAATGATCTCATCATGAACTACGATGATAATAGGGTTAAAACTATACAAAATATTCCTAAATTTTAGAGTAATTCG

mRNA sequence

ATGGCTAAAGCCATTATTGTAATGATAAAGTTCTTCTTCGTTTGCTTTATTACTGTAATCATTTTGCTGCCATTTTTGAGCTTTGGATCAGCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCAAGTGGCTTCATGGAAAGTGCTAAGGATGCATTAATGGCTAGTCTCCAAAGACAAGGTGGAAAGCCCTTTCAGGTGCAGCGAACCAGCCCTGGAGGACCCGATCAACACCATCATTAA

Coding sequence (CDS)

ATGGCTAAAGCCATTATTGTAATGATAAAGTTCTTCTTCGTTTGCTTTATTACTGTAATCATTTTGCTGCCATTTTTGAGCTTTGGATCAGCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCCAAGTGGCTTCATGGAAAGTGCTAAGGATGCATTAATGGCTAGTCTCCAAAGACAAGGTGGAAAGCCCTTTCAGGTGCAGCGAACCAGCCCTGGAGGACCCGATCAACACCATCATTAA
Homology
[Close]
BLAST of CSPI04G23020 vs. TrEMBL
Match: A0A0A0L3B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627810 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-33
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 1  MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPS--PPSGFMESAKDALMASLQR 60
          MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPS  PPSGFMESAKDALMASLQR
Sbjct: 1  MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSSSPPSGFMESAKDALMASLQR 60

Query: 61 QGGKPFQVQRTSPGGPDQHHH 80
          +GGKPFQVQRTSPGGPDQHHH
Sbjct: 61 RGGKPFQVQRTSPGGPDQHHH 81

[Close]
BLAST of CSPI04G23020 vs. NCBI nr
Match: gi|700199924|gb|KGN55082.1| (hypothetical protein Csa_4G627810 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 7.6e-33
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 1 

Query: 1  MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPS--PPSGFMESAKDALMASLQR 60
          MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPS  PPSGFMESAKDALMASLQR
Sbjct: 1  MAKAIIVMIKFFFVCFITVIILLPFLSFGSAPPPPPPPSSSPPSGFMESAKDALMASLQR 60

Query: 61 QGGKPFQVQRTSPGGPDQHHH 80
          +GGKPFQVQRTSPGGPDQHHH
Sbjct: 61 RGGKPFQVQRTSPGGPDQHHH 81

The following BLAST results are available for this feature:
BLAST of CSPI04G23020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI04G23020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3B3_CUCSA5.3e-3396.30Uncharacterized protein OS=Cucumis sativus GN=Csa_4G627810 PE=4 SV=1[more]
BLAST of CSPI04G23020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI04G23020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700199924|gb|KGN55082.1|7.6e-3396.30hypothetical protein Csa_4G627810 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G23020.1CSPI04G23020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G23020Csa4G627810Cucumber (Chinese Long) v2cpicuB181
CSPI04G23020CsaV3_4G033250Cucumber (Chinese Long) v3cpicucB212
CSPI04G23020Bhi09G002856Wax gourdcpiwgoB421
CSPI04G23020Cp4.1LG02g01860Cucurbita pepo (Zucchini)cpecpiB567
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G23020Watermelon (97103) v2cpiwmbB286
CSPI04G23020Watermelon (97103) v2cpiwmbB338
CSPI04G23020Wild cucumber (PI 183967)cpicpiB149
CSPI04G23020Cucumber (Gy14) v1cgycpiB164
CSPI04G23020Cucumber (Gy14) v1cgycpiB412
CSPI04G23020Cucurbita maxima (Rimu)cmacpiB021
CSPI04G23020Cucurbita maxima (Rimu)cmacpiB027
CSPI04G23020Cucurbita maxima (Rimu)cmacpiB345
CSPI04G23020Cucurbita maxima (Rimu)cmacpiB477
CSPI04G23020Cucurbita moschata (Rifu)cmocpiB012
CSPI04G23020Cucurbita moschata (Rifu)cmocpiB466
CSPI04G23020Cucumber (Chinese Long) v2cpicuB186
CSPI04G23020Melon (DHL92) v3.5.1cpimeB293
CSPI04G23020Watermelon (Charleston Gray)cpiwcgB289
CSPI04G23020Watermelon (Charleston Gray)cpiwcgB348
CSPI04G23020Watermelon (97103) v1cpiwmB356
CSPI04G23020Cucurbita pepo (Zucchini)cpecpiB785
CSPI04G23020Cucurbita pepo (Zucchini)cpecpiB791
CSPI04G23020Bottle gourd (USVL1VR-Ls)cpilsiB283
CSPI04G23020Bottle gourd (USVL1VR-Ls)cpilsiB307
CSPI04G23020Melon (DHL92) v3.6.1cpimedB287
CSPI04G23020Cucumber (Gy14) v2cgybcpiB169
CSPI04G23020Cucumber (Gy14) v2cgybcpiB174
CSPI04G23020Silver-seed gourdcarcpiB0194
CSPI04G23020Silver-seed gourdcarcpiB0196
CSPI04G23020Silver-seed gourdcarcpiB0345
CSPI04G23020Silver-seed gourdcarcpiB0688
CSPI04G23020Cucumber (Chinese Long) v3cpicucB220