CSPI04G19600 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G19600
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Peptidyl-prolyl cis-trans isomerase
Location	Chr4 : 17392464 .. 17393121 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGATGGACTAGAGGCAAAGAGACGTCGTGCGTGGTGTTTGTGCGCTTGCAATCGTCTTCCTCGTGGACGTTTCTTCCTGCTTTATGGTCTATCGGTGCTTAATTGGGTCTATTCGACCGACTTCCGTCAAGGTTTCTTCCACTTTTGATTTTGTTAACAATGGTGGTTTTTCAAGAGTGGGGAGCACAACGAAGAGTGTTGCCGAGGAATTGTTCAATTGGAGCTGTGGGGAGATGCTGTGAAATGGGGTTGTGATTTTAAGCTCAATTCGTCGAGAGAGTGTTGTTTGGCTTGCAAAGCCATGTGTGATGATCAAAGTAGATGTGTTGGTGTGATTCTTGGATGTTCTGTGATGTCAAGAGAGAGATTCTCATTCATATTTCACAGTGAAGAAGTTTTTCACAAAATCAAAAGAGATGAAAGGAAGTGTGAACATCTCTCCTCTGTATGATGAATAAGAATTTCTCCATTTCATTTTCTACGAAGACTATTCTCTCTTATGGAGTCCACACTTGGAGGCATTCATAATTCTCAAGGAGCTTCCAGCTCCACCGACGAGAGGGAGTGGTCGGCAACGAGTTTGGAGTACCATTCGACAGTGAGAAAATGGCATGAAGAAATTTTCTCAGCCGAGTTTGGAGTACCATCCTGA

mRNA sequence

ATGATCAGATGGACTAGAGGCAAAGAGACGTCGTGCGTGGTGTTTGTGCGCTTGCAATCGTCTTCCTCGTGGACGTTTCTTCCTGCTTTATGTGGGGAGCACAACGAAGAGTGTTGCCGAGGAATTGTTCAATTGGAGCTGTGGGGAGATGCTGTGAAATGGGGTTGTGATTTTAAGCTCAATTCGTCGAGAGAGTGTTGTTTGGCTTGCAAAGCCATGTGTGATGATCAAAGTAGATGTGTTGGTGTGATTCTTGGATGTTCTTCCACACTTGGAGGCATTCATAATTCTCAAGGAGCTTCCAGCTCCACCGACGAGAGGGAGTGGTCGGCAACGAGTTTGGAGTACCATTCGACAGTGAGAAAATGGCATGAAGAAATTTTCTCAGCCGAGTTTGGAGTACCATCCTGA

Coding sequence (CDS)

ATGATCAGATGGACTAGAGGCAAAGAGACGTCGTGCGTGGTGTTTGTGCGCTTGCAATCGTCTTCCTCGTGGACGTTTCTTCCTGCTTTATGTGGGGAGCACAACGAAGAGTGTTGCCGAGGAATTGTTCAATTGGAGCTGTGGGGAGATGCTGTGAAATGGGGTTGTGATTTTAAGCTCAATTCGTCGAGAGAGTGTTGTTTGGCTTGCAAAGCCATGTGTGATGATCAAAGTAGATGTGTTGGTGTGATTCTTGGATGTTCTTCCACACTTGGAGGCATTCATAATTCTCAAGGAGCTTCCAGCTCCACCGACGAGAGGGAGTGGTCGGCAACGAGTTTGGAGTACCATTCGACAGTGAGAAAATGGCATGAAGAAATTTTCTCAGCCGAGTTTGGAGTACCATCCTGA

Homology

[Close]

BLAST of CSPI04G19600 vs. TrEMBL
Match: A0A0A0KYJ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G442600 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 5.0e-76
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 1


Query: 1   MIRWTRGKETSCVVFVRLQSSSSWTFLPALCGEHNEECCRGIVQLELWGDAVKWGCDFKL 60
           MIRWTRGKETSCVVFVRLQSSSSWTFLPALCGEHNEECCRGIVQLELWGDAVKWGCDFKL
Sbjct: 1   MIRWTRGKETSCVVFVRLQSSSSWTFLPALCGEHNEECCRGIVQLELWGDAVKWGCDFKL 60

Query: 61  NSSRECCLACKAMCDDQSRCVGVILGCSSTLGGIHNSQGASSSTDEREWSATSLEYHSTV 120
           NSSRECCLACKAMCDDQSRCVGVILGCSSTLGGIHNSQGASSSTDEREWSATSLEYHSTV
Sbjct: 61  NSSRECCLACKAMCDDQSRCVGVILGCSSTLGGIHNSQGASSSTDEREWSATSLEYHSTV 120

Query: 121 RKWHEEIFSAEFGVPS 137
           RKWHEEI SAEFGVPS
Sbjct: 121 RKWHEEILSAEFGVPS 136

[Close]

BLAST of CSPI04G19600 vs. TrEMBL
Match: A0A0A0L4L1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129600 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.8e-18
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 32  GEHNEECCRGIVQLELWGDAVKWGCDFKLNSSRECCLACKAMCDDQS 79
           GEHNEECCRGI  LELWGDAVKWG DFKLNSSRECCLACKAMCD  S
Sbjct: 60  GEHNEECCRGIDHLELWGDAVKWGSDFKLNSSRECCLACKAMCDGHS 106

[Close]

BLAST of CSPI04G19600 vs. TrEMBL
Match: F6GVC3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g01210 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-13
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 7  GKETSCVVFVRLQSSSSWTFLPALC---------GEHNEECCRGIVQLELWGDAVKWGCD 66
          G  + CVV+  L +    T + ++          G    +CCRGI  LELWGDAVKWG D
Sbjct: 22 GATSCCVVYTLLSAGLRRTPISSVLDSIESGDVLGREEAQCCRGIEHLELWGDAVKWGAD 81

Query: 67 FKLNSSRECCLACKAMC 75
          FK+NSS ECC ACKAMC
Sbjct: 82 FKVNSSEECCRACKAMC 98

[Close]

BLAST of CSPI04G19600 vs. TrEMBL
Match: A5BU59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014468 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 6.1e-13
Identity = 38/77 (49.35%), Postives = 46/77 (59.74%), Query Frame = 1


Query: 7  GKETSCVVFVRLQSSSSWTFLPALC---------GEHNEECCRGIVQLELWGDAVKWGCD 66
          G  + CVV+  L +    T + ++          G    +CCRGI  LELWGDAVKWG D
Sbjct: 22 GATSCCVVYTLLSAGLRRTPISSVLDSIESGDVLGREEAQCCRGIEHLELWGDAVKWGAD 81

Query: 67 FKLNSSRECCLACKAMC 75
          FK+NSS ECC ACKAMC
Sbjct: 82 FKVNSSEECCRACKAMC 98

[Close]

BLAST of CSPI04G19600 vs. TrEMBL
Match: B9GP80_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s14040g PE=4 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1


Query: 33 EHNEECCRGIVQLELWGDAVKWGCDFKLNSSRECCLACKAMCDDQS 79
          + N +CCRGI  LELWGDAVKWG ++K+NSS++CCLACK MC D S
Sbjct: 39 DRNGDCCRGIEHLELWGDAVKWGSEYKVNSSKDCCLACKGMCSDDS 84

[Close]

BLAST of CSPI04G19600 vs. TAIR10
Match: AT4G17070.1 (AT4G17070.1 peptidyl-prolyl cis-trans isomerases)

HSP 1 Score: 67.4 bits (163), Expect = 7.8e-12
Identity = 28/37 (75.68%), Postives = 28/37 (75.68%), Query Frame = 1


Query: 38  CCRGIVQLELWGDAVKWGCDFKLNSSRECCLACKAMC 75
           CCRGI  LELWG AVKWG DFK NSS  CC ACK MC
Sbjct: 69  CCRGIDNLELWGPAVKWGTDFKFNSSDGCCKACKVMC 105

[Close]

BLAST of CSPI04G19600 vs. NCBI nr
Match: gi|700199587|gb|KGN54745.1| (hypothetical protein Csa_4G442600 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 7.2e-76
Identity = 135/136 (99.26%), Postives = 135/136 (99.26%), Query Frame = 1


Query: 1   MIRWTRGKETSCVVFVRLQSSSSWTFLPALCGEHNEECCRGIVQLELWGDAVKWGCDFKL 60
           MIRWTRGKETSCVVFVRLQSSSSWTFLPALCGEHNEECCRGIVQLELWGDAVKWGCDFKL
Sbjct: 1   MIRWTRGKETSCVVFVRLQSSSSWTFLPALCGEHNEECCRGIVQLELWGDAVKWGCDFKL 60

Query: 61  NSSRECCLACKAMCDDQSRCVGVILGCSSTLGGIHNSQGASSSTDEREWSATSLEYHSTV 120
           NSSRECCLACKAMCDDQSRCVGVILGCSSTLGGIHNSQGASSSTDEREWSATSLEYHSTV
Sbjct: 61  NSSRECCLACKAMCDDQSRCVGVILGCSSTLGGIHNSQGASSSTDEREWSATSLEYHSTV 120

Query: 121 RKWHEEIFSAEFGVPS 137
           RKWHEEI SAEFGVPS
Sbjct: 121 RKWHEEILSAEFGVPS 136

[Close]

BLAST of CSPI04G19600 vs. NCBI nr
Match: gi|659075754|ref|XP_008438312.1| (PREDICTED: uncharacterized protein LOC103483456 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 5.3e-18
Identity = 47/70 (67.14%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 32  GEHNEECCRGIVQLELWGDAVKWGCDFKLNSSRECCLACKAMCDDQS---RCVGVILGCS 91
           GEHNEECC GI  LELWGDAVKWG DFKL+SSRECCLACKAMCDDQS   RC   +    
Sbjct: 60  GEHNEECCGGIDHLELWGDAVKWGSDFKLSSSRECCLACKAMCDDQSGLCRCNSWVFCGD 119

Query: 92  STLGGIHNSQ 99
           S   G H+ +
Sbjct: 120 SKACGPHSGE 129

[Close]

BLAST of CSPI04G19600 vs. NCBI nr
Match: gi|700201570|gb|KGN56703.1| (hypothetical protein Csa_3G129600 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 6.9e-18
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 32  GEHNEECCRGIVQLELWGDAVKWGCDFKLNSSRECCLACKAMCDDQS 79
           GEHNEECCRGI  LELWGDAVKWG DFKLNSSRECCLACKAMCD  S
Sbjct: 60  GEHNEECCRGIDHLELWGDAVKWGSDFKLNSSRECCLACKAMCDGHS 106

[Close]

BLAST of CSPI04G19600 vs. NCBI nr
Match: gi|778688432|ref|XP_011652748.1| (PREDICTED: uncharacterized protein LOC101208677 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 6.9e-18
Identity = 42/47 (89.36%), Postives = 42/47 (89.36%), Query Frame = 1


Query: 32  GEHNEECCRGIVQLELWGDAVKWGCDFKLNSSRECCLACKAMCDDQS 79
           GEHNEECCRGI  LELWGDAVKWG DFKLNSSRECCLACKAMCD  S
Sbjct: 60  GEHNEECCRGIDHLELWGDAVKWGSDFKLNSSRECCLACKAMCDGHS 106

[Close]

BLAST of CSPI04G19600 vs. NCBI nr
Match: gi|694400571|ref|XP_009375370.1| (PREDICTED: uncharacterized protein LOC103964197 isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 83.6 bits (205), Expect = 3.0e-13
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 1


Query: 32  GEHNEECCRGIVQLELWGDAVKWGCDFKLNSSRECCLACKAMCDDQ 78
           GE + ECCRGI  LELWGDAVKWG +FK+NSS+ECC+ACK MC D+
Sbjct: 59  GEEDGECCRGIENLELWGDAVKWGSEFKVNSSKECCMACKDMCGDR 104

The following BLAST results are available for this feature:

BLAST of CSPI04G19600 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G19600 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYJ0_CUCSA	5.0e-76	99.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G442600 PE=4 SV=1	[more]
A0A0A0L4L1_CUCSA	4.8e-18	89.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G129600 PE=4 SV=1	[more]
F6GVC3_VITVI	6.1e-13	49.35	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g01210 PE=4 SV=...	[more]
A5BU59_VITVI	6.1e-13	49.35	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014468 PE=4 SV=1	[more]
B9GP80_POPTR	1.0e-12	67.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s14040g PE=4 SV=2	[more]

BLAST of CSPI04G19600 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17070.1	7.8e-12	75.68	peptidyl-prolyl cis-trans isomerases	[more]

BLAST of CSPI04G19600 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700199587\|gb\|KGN54745.1\|	7.2e-76	99.26	hypothetical protein Csa_4G442600 [Cucumis sativus]	[more]
gi\|659075754\|ref\|XP_008438312.1\|	5.3e-18	67.14	PREDICTED: uncharacterized protein LOC103483456 [Cucumis melo]	[more]
gi\|700201570\|gb\|KGN56703.1\|	6.9e-18	89.36	hypothetical protein Csa_3G129600 [Cucumis sativus]	[more]
gi\|778688432\|ref\|XP_011652748.1\|	6.9e-18	89.36	PREDICTED: uncharacterized protein LOC101208677 [Cucumis sativus]	[more]
gi\|694400571\|ref\|XP_009375370.1\|	3.0e-13	71.74	PREDICTED: uncharacterized protein LOC103964197 isoform X1 [Pyrus x bretschneide...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G19600.1	CSPI04G19600.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31485	FAMILY NOT NAMED	coord: 36..74 score: 2.4
None	No IPR available	PANTHER	PTHR31485:SF8	SUBFAMILY NOT NAMED	coord: 36..74 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G19600	Csa4G442600	Cucumber (Chinese Long) v2	cpicuB181
CSPI04G19600	CsGy4G018450	Cucumber (Gy14) v2	cgybcpiB170

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G19600	Watermelon (97103) v2	cpiwmbB312
CSPI04G19600	Wax gourd	cpiwgoB403
CSPI04G19600	Cucumber (Gy14) v1	cgycpiB267
CSPI04G19600	Cucurbita maxima (Rimu)	cmacpiB673
CSPI04G19600	Cucurbita maxima (Rimu)	cmacpiB886
CSPI04G19600	Cucurbita moschata (Rifu)	cmocpiB673
CSPI04G19600	Cucurbita moschata (Rifu)	cmocpiB867
CSPI04G19600	Melon (DHL92) v3.5.1	cpimeB325
CSPI04G19600	Watermelon (Charleston Gray)	cpiwcgB322
CSPI04G19600	Cucurbita pepo (Zucchini)	cpecpiB067
CSPI04G19600	Cucurbita pepo (Zucchini)	cpecpiB492
CSPI04G19600	Bottle gourd (USVL1VR-Ls)	cpilsiB249
CSPI04G19600	Melon (DHL92) v3.6.1	cpimedB316
CSPI04G19600	Silver-seed gourd	carcpiB0513
CSPI04G19600	Silver-seed gourd	carcpiB0552
CSPI04G19600	Cucumber (Chinese Long) v3	cpicucB212