CSPI04G19410 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G19410
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionElongation factor 4
LocationChr4 : 17188164 .. 17194451 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGCAGCTCGAATGCGCTACATGTATAAGAATGAAGCATACTGCTTGAATTTGATTGATACACCTGGCCATGTTGACTTCTCTTATGAGGTAATTTCGTGCAAGCCTTTTGATTTCTGCAACGCTTATATTTTATAATTGCATTTGATGGCTATCTTGCAATATAATGTACCAAATGATAAAGCTGATCCAAACAGTTACCATAAAACTTCAGCATTCTGGGTTGGAAAAGAAGAAGAATTGGTGGACTTGCATATACAACAATTTAATAAATTAATTCTGAAAGTAGCTAAAATGTAGGCCTAACGCTCTAAGTAGTGGACAAAAAGGGCCAACATACGATTAGAAAAAGGAGAGACCTTGTTCACCAAAGACAAGTAATCACTCTAGTAATGTGCTAAGCCTCCAATTGAGAATTGATATGTAAGAATGGGTAATAAAGGAAAATGCCACTGTGGACACATATCTGATGGAGGAAGGTGGGTGATCTAACCGGTGACATGGAGTGAAGTGGGAGATCTACACTGGGTCTGCCTCCGCTAACGATCGTTCGATGGAGGCAAAGATCAAATATGACTATGACGACTAGGGTTCAATTGAGACAAAAAACCTAATGCTCTGATACGATGATAATTTTATATAATGTATTGAATATTCAGAACGATCACCTTTTACATTGGTAAATAAATAGAAACCAAAATACTAATAAAGGAAAAGTACATAAATGTAAAATAATAATTAGGAATAAACCTAATTTAGTAATAAGCCCTAATTTTCTTTTGCAGAAATTGGAGGCAAATAAATATCAATTTCCTTTTTCGTTTATTGAATATATGCAAATTAGGTCTTCTAATATAGAAGAAAGACCTTACAAATATGGAAAGAATAAAAATAAAAAAGAACAAATATTTGAAAAATAATATCCATATACAAATAAAGAAATTCGAACTCTCCCTCAAGCTGGATGTGTTTTAGGTGATCTTCCCTAGATGAGCTATACATGAGTATGTCATCAAAGTATACCACAATGAATTGATTAAAAAAAGGTTGTAGGATTTGGTTCATCAAACTCATAAAGGTGCTAGGGGCATTAGAAAGACCAAAGGGCATAACTAACCATTCAAACAACTCTTCATTGGTTTTAAAGGCTGTTTTCCACTCATCCCCTGGGTTAATTCTAATTTGGTGGGAGCCACTCTTAAGATCTACTTTGGAAAAGATGGAAGCTTTACCTAATTGATCAAGGAGGTCGGATAAACGAGGTGTGGGAAACCTATATTTGACTGTAATTTTGTTTATAAATCTACTATCTACACAAAGTCTTCAGTTGCCATCTTTTTTTGGTGCAAGTAGAGCTGGGACAGCACAAAGACTTAGGCTAGGTTGGATATGACCTTTGTTAAGAAGCTCTTCTATTTGTTCATGTAATATTTTGTACTCTCTAGGGTTCATTCGATAATGTGGCAGATTTGTTAATTCTACTAATGATTGCTGTATATCCGACTGCCCTTTTCGAAGTTCTTCAACAGCTTGTTCTACCAACTGCAAGCGTTGGTTGAAGGAGGCTTCCACGTCCATGGATAAGAGTGGTAGGATCCAAGTTTTTTGAGGGAAGGGTGAGCTAGGATCACGCTCTGATACCAAATGATGCAGTAATTGCAAAGCTAGAAATCTTTATGTATAATGCCTCTTTTTTGATGATCTATTAATGAAAATGAGAAGCCTTTTTATACGCGGGAGATTACAAGAGTTATTAAACTAACTTGGGGTTGAGTTAGTTTAACTTGGAATTGAGTTAGTTTATTTATAACTAACTCAAGATACAAAATTGGTAATTCAAATAACTAATCCTAAACTATAAAAATGGTAATTCAAACCCCTCCTCTAGGACAAAACTCAAGAAACATCAAGAATAGAGGACAAAACTCAAGAAACATCAAGAAGGGAGATGTTCTACATCAGGTTCCTTCTCGGTAAAATCATTGGTTAAGTATCTCATGACTTCTTCTCCTTTAGAAAGTTCTTTGTACAAAAGGCTTTGGCAATCTAATAGTCCAAGAATGGTAAAATATCTCCACATGGATTATGCTGTTTGGAAAATTAAATTGTGCTTCAGTACTTCAAAGTAAGCTTCCCTCTCATGTTCTCTCACCTCATGCCTGCCCCCTTTGTGTTGGTAACATGGAAAATATTAAGCACCTTTTATTTGACTGTATCTTTGCATCTAAATGTTGGTTCCGTCTTCTCCAAGCATTCAATATTTGTTAGGCCTTTGATCATGAATTATTCTGCGGTAGAGCTTTTAACAAATTTTCCCATATTATATGAGATTTCTTGGGTAAAATTGGACCCAACAGCAGCTGAGCAACATTAGCGTTTAGTGATCGATCCAATACCCAATCAAAATTGAACAAGTAGAAAATCCTCACCCAGCAGAAGGAAGGACGGGGCAATTAAAAAAATATGAGGAAGATTCTCACAAGCCTTCATACATAGAGGACAAATCGAAGAAGAGAGGCATTTGTTTGGGGATTTCTTTTGCAAAATTTCTGAACTGTTGAGCTAAGAATCACATACACTTTAATTTGGATAGCATGTTCGTGTCCGACACGTGTTGGACAATCTGGAACTGGCTGAACACCTATTGGACGCTTGCTAGTGCAACAAATGTATTAGACATGCATAGAACACTCATTGAGTAGACTAAAAAAGACACGTATATGACAATAATATTAACTTTTGAGCATGGAATACATCAAGCCAAGTCTTTTAAGTATATAAATGCATCAATTCATTTACTATAAAAATGATATATATATTTTAAAAATGAATATTTTAATAAACGTATCCTTGCCTTGTCGTGTTCTAAATTTTTGAAATATAGTGTGTCACTGTGTCCGTGTCGTGTTGTATTCGTGTCTCGTATCTGTGTCCATGCTTCTTAGTTGTTGAGGGACCTGAAGACCATAATCCAAATCAAGATGTTAATTCTCTGTGGGCTGCCTGATTTTAATTCATCGGGGAGGCAGTTTTTAGGTGAGCCGAAAGAGACTTAATGAAAAACCGGCCATGGGGATCAATGGACCAAGATCTATAATCGTTGGATTTATTCACTTTCTTAGTTGAGAGGAGGGATGTAATGATTGAAATTCTCAATTTCATCATCTTTCAAACATCTTCTAAAGGCCAATGACCAAGATGAAATATCACAGTCCCAACGTGCTGCAACTGAACCGGTGGGCAAAAGAGCAATTCTAAAGAGCTTGGAAAATTGCTCCTTAATAAGGGCCTTACCAACCCAAGGATCTGTCCAAAAATCGATTCTACGACCGTTACCAAGTTTAAGTGAGGCTAATGAGTCTACCGACCTCCAAACTCCAGCAATGTTTACCCAAGGACTCCTTAGATTGTTTCTGGACTTTCCTTTAGTAAACCAATCAAAAACCTCCTTTTCGTGTATGCTTCTAATTATTTGTCTCCATAGAGCTGACTCTTCTTTTGAGAATCTCCACCTCCACTTAGCGAGCAAAGCAGTGTTATGGACTTTAATTCCTCCTAGGCCGAGACCCCCATCTTTTAGAGGTGGGTGAGACCTTGTTCAACTTCACAAGGTGGTTAATTTTGCTACCGGCGTAGCCTTCCCAAAAGAAGTTTTGCATGATTCTCTTTAAAGAGGCAGGCACATTTTCAGGTATTGAAAATAAAGATAGGTAATAGGTGGGAAGATTAACCAGCAATGAGTTATAAAAGGTGTGCTACCTCCTTTGAGATGGTATATCTTTTCCACCTATCTAGTTTCTTGTGAATTCGATCAATAACTGGCCGCCAAAATTCCTTTTGTCAAGGGTAGCCTCCCAAAGGGAAACCTAAATATTGAAGCGGTAACTTTTCTGCCTTGCAGCATAGCCGATTTTCTGTTTGAATCAAATCTTCCTCTCCCACATTAACACCACTAAGGGCTGATTTCTCTAAATTTTCTTTCTGCCTTGAATACCATTCGAATAGCCTAATGGCATCCTTAAGCTTTAGTAGCTTTTCTCATCATACTTACAGAATAGGAGAGTGTCACAGGCGAATTGGAGCGATGGGAGGTGGATCATGTCCTTGCCAACGAGAAAACCGTCAAACTGACCATTAATATGAAGTTTGTTATGATTTCTCCTAGAACCTCACTTTCTAAGAGAAATAAAAAGGGGGAAGGGGGTCCCCTTGGTGGATACCTTAAGAGGCTGTTATTCGATCTCTTGGCTTACCATTAATGAGAACTGAGAATTTTGGACTTCTTAGGCAGCCCATTATCCATGAAGTCCATGTGGAGCTAAACTTTTCAAATGATAAAACCTTTTCTAAAAAGTTCCAATCCACCCTATCAAAGCTTTTTCAAGATCGAGTCTTAAAATCCAGCCCTATCAATTACAGGATTTTATTCGCCTCCAATCTTCAACTTGGAATAAATCATGCTCGTGCCATATGTAGTAGGGAGAGCCAAAAACCTTGCAACTTTCTACTTCCATTTCGTGCTTTCTTGCTCGAGAAACAAATATCTGAAAATGTCGGAGGGGGAAGGCCGAGGGAGAAAGAGAAAAAGTGAGAGGAGAGAGGATAGAGGAGAGAACTTACCTTATAAAATAAAAATAATACCAATCCACTCTATCTTGGTCTATTGTTTTTAGAAGACCACTTAAAGAAGATGAAATCATAGAGTTTCAGCAATTGCTTCAACTTTTTTCGCAAAGGCGACTGGCAGAATCTCTAGATAGAAGGCTTTGGTCTTTAGAATCATCCGATAAGTTTTCAGTCAAATCTCTTGTGGCTCACCTTTCACCCTCATCTCTGATGAATTGAGAGACTTACATACCCTTATGGAAATCCAACAGCCCTAGTAGAGTTAATATTTTTGTATGGATTATGTTGTTTGAATTATTAAACTGTTCATTGGTCATGCGAAGGAGGCTTCCAAACAGTTGCCTCTTGCCCTCAGTATGCCTTCTTTGCCTTCAAGAAGAGCAAGATTTGCAACACTTGTTCTTCTCCTGCTCATATTCAGCTAAGTGTTGGGGCAGTTTGCTCTCTTTATTCGAAGTTGATTGGGTTTTTGATGGCACATTCAGCTTTAATGTAGTTAGATTATGATGAGTCCTTTCATAAAAAAGGGGCCAAGATTACTATGGATTAACTTGTCCAAAGCACCGCTCGCGAAAATATGGTTTGAACGTAACCAAAGGATATTCCATAATATATGAGTTGGTCAGAACAAATGGGCATTGCAAAAAGAAATGCAGCTGCTTGATGCGCTCAGAACAAGGAGTTTAGCGCATACTCTATTCAATATTTGTGTTTGAATTGGTCGGCTTTCACCTCTTAAGTTCGCTAGAATTGTGTGATTTGATCATACAATGCACTCTACCTTATTTTGAGGTACTCTTTTATTAAAATTTCTACTTTTACTAGTATTGTATGGACATGATGGACGCTAGTGCCTAGGGGGGTGTCAACCTAGTTGAGATGTCTGGGTGCGTCACCTAATCTCTAGGTCTCACTCATATATCTCATGTATGCTATTGGGTCTTAATTTTGAAACTTTTCGTAATTATTCTATTGGCGTTTTTTGTATAGTTTGAGTCTCTTCTAAGTTGAGATTCCCTCCTTTTATCGTGGGATTGCCTTTTTGTATGTCCTTGTATTCTTTCAATTTTTCTCCATGAATGTTTATAGAGAAAAATAGCCATAATATTTCAACTTCCCCTTTTTTGCTAGGTTTCTCGATCTCTTGCTGCCTGTGAGGGTGCTCTCCTTGTTGTAGATGCTTCACAGGTAAATCATTCTTGAGAATACTTTGTGTTTGCATAGTTTATTATTTCTCTTCCAATTTGCTACCCATGTCTGGAATCTATATGCATTGATTGTGTGCAATTTGGCCATAGCAATGTTTCTATGAACCTTCTAGTTTTTGTTATAGTTAAACCTATATTATCTTTTGTTATGTTTAACTCCTATTCAAATATGTATTCTTGATAATACTTTGTGTTTGCATAGTTTATTATTTCTCTTCCAATTTGCTACCCATGTCTGGAATCTATATGCATTAATTGTGTGCAATTTGGCCATAGCAATGTTTCTATGAACCTTCTAGTTTTTGTTATAGTTGAACCTATATTATCTTTTGTTATGTTTAACTCCTATTCAAATATGTATTAGGGCGTGGAGGCACAAACGTTGGCAAATGTCTATTTGGCTCTTGATAATAACTTAGAAATTATCCCCGTAAGTTTCATCATTATACTGCTC

mRNA sequence

CAGGCAGCTCGAATGCGCTACATGTATAAGAATGAAGCATACTGCTTGAATTTGATTGATACACCTGGCCATGTTGACTTCTCTTATGAGGTTTCTCGATCTCTTGCTGCCTGTGAGGGTGCTCTCCTTGTTGTAGATGCTTCACAGGGCGTGGAGGCACAAACGTTGGCAAATGTCTATTTGGCTCTTGATAATAACTTAGAAATTATCCCCGTAAGTTTCATCATTATACTGCTC

Coding sequence (CDS)

CAGGCAGCTCGAATGCGCTACATGTATAAGAATGAAGCATACTGCTTGAATTTGATTGATACACCTGGCCATGTTGACTTCTCTTATGAGGTTTCTCGATCTCTTGCTGCCTGTGAGGGTGCTCTCCTTGTTGTAGATGCTTCACAGGGCGTGGAGGCACAAACGTTGGCAAATGTCTATTTGGCTCTTGATAATAACTTAGAAATTATCCCCGTAAGTTTCATCATTATACTGCTC
Homology
[Close]
BLAST of CSPI04G19410 vs. Swiss-Prot
Match: GUFP_POPTR (Translation factor GUF1 homolog, chloroplastic OS=Populus trichocarpa GN=POPTRDRAFT_815670 PE=3 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 4.8e-32
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRY+Y+NE YCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 136 QAARMRYVYENEGYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 195

Query: 61  LALDNNLEIIPV 73
           LAL+NNLEIIPV
Sbjct: 196 LALENNLEIIPV 207

[Close]
BLAST of CSPI04G19410 vs. Swiss-Prot
Match: GUFP_VITVI (Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera GN=VITISV_013255 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-31
Identity = 67/72 (93.06%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRY+++NE YCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 138 QAARMRYVFENEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 197

Query: 61  LALDNNLEIIPV 73
           LAL+NNLEIIPV
Sbjct: 198 LALENNLEIIPV 209

[Close]
BLAST of CSPI04G19410 vs. Swiss-Prot
Match: GUFP_RICCO (Translation factor GUF1 homolog, chloroplastic OS=Ricinus communis GN=RCOM_1767360 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-31
Identity = 67/72 (93.06%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRY+Y+N+ YCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 141 QAARMRYVYENKPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 200

Query: 61  LALDNNLEIIPV 73
           LAL+NNLEIIPV
Sbjct: 201 LALENNLEIIPV 212

[Close]
BLAST of CSPI04G19410 vs. Swiss-Prot
Match: GUFP_ARATH (Translation factor GUF1 homolog, chloroplastic OS=Arabidopsis thaliana GN=At5g08650 PE=2 SV=2)

HSP 1 Score: 131.7 bits (330), Expect = 3.5e-30
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRY+Y++  +CLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 139 QAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 198

Query: 61  LALDNNLEIIPV 73
           LAL+NNLEIIPV
Sbjct: 199 LALENNLEIIPV 210

[Close]
BLAST of CSPI04G19410 vs. Swiss-Prot
Match: GUFP_ORYSJ (Translation factor GUF1 homolog, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0157700 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.0e-29
Identity = 65/72 (90.28%), Postives = 69/72 (95.83%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRY+  +E YCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 130 QAARMRYIMNDEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 189

Query: 61  LALDNNLEIIPV 73
           LAL+N+LEIIPV
Sbjct: 190 LALENDLEIIPV 201

[Close]
BLAST of CSPI04G19410 vs. TrEMBL
Match: A0A0A0L295_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437520 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-31
Identity = 71/72 (98.61%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 140 QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 199

Query: 61  LALDNNLEIIPV 73
           LALDNNLEIIP+
Sbjct: 200 LALDNNLEIIPL 211

[Close]
BLAST of CSPI04G19410 vs. TrEMBL
Match: A0A068V5F4_COFCA (Translation factor GUF1 homolog, mitochondrial OS=Coffea canephora GN=GSCOC_T00016984001 PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.4e-30
Identity = 68/72 (94.44%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMR+MY+NEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 141 QAARMRFMYENEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 200

Query: 61  LALDNNLEIIPV 73
           LAL+NNLE+IPV
Sbjct: 201 LALENNLEVIPV 212

[Close]
BLAST of CSPI04G19410 vs. TrEMBL
Match: U5GV27_POPTR (Translation factor GUF1 homolog, mitochondrial OS=Populus trichocarpa GN=POPTR_0001s31270g PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.4e-30
Identity = 68/72 (94.44%), Postives = 71/72 (98.61%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRY+Y+NE YCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 136 QAARMRYVYENEGYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 195

Query: 61  LALDNNLEIIPV 73
           LAL+NNLEIIPV
Sbjct: 196 LALENNLEIIPV 207

[Close]
BLAST of CSPI04G19410 vs. TrEMBL
Match: A0A061DN87_THECC (Translation factor GUF1 homolog, chloroplastic OS=Theobroma cacao GN=TCM_003433 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.4e-30
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRYMY NE YCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 139 QAARMRYMYGNEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 198

Query: 61  LALDNNLEIIPV 73
           LAL+NNLEIIPV
Sbjct: 199 LALENNLEIIPV 210

[Close]
BLAST of CSPI04G19410 vs. TrEMBL
Match: A0A061DQ14_THECC (Translation factor GUF1 homolog, mitochondrial OS=Theobroma cacao GN=TCM_003433 PE=3 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.4e-30
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRYMY NE YCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 139 QAARMRYMYGNEPYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 198

Query: 61  LALDNNLEIIPV 73
           LAL+NNLEIIPV
Sbjct: 199 LALENNLEIIPV 210

[Close]
BLAST of CSPI04G19410 vs. TAIR10
Match: AT5G08650.1 (AT5G08650.1 Small GTP-binding protein)

HSP 1 Score: 131.7 bits (330), Expect = 2.0e-31
Identity = 65/72 (90.28%), Postives = 70/72 (97.22%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRY+Y++  +CLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 139 QAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 198

Query: 61  LALDNNLEIIPV 73
           LAL+NNLEIIPV
Sbjct: 199 LALENNLEIIPV 210

[Close]
BLAST of CSPI04G19410 vs. TAIR10
Match: AT5G39900.1 (AT5G39900.1 Small GTP-binding protein)

HSP 1 Score: 99.4 bits (246), Expect = 1.1e-21
Identity = 53/77 (68.83%), Postives = 60/77 (77.92%), Query Frame = 1 

Query: 1   QAARMRYMYKNE-----AYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 60
           Q A M Y  K E      Y LNLIDTPGHVDFSYEVSRSL+AC+GALLVVDA+QGV+AQT
Sbjct: 119 QTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQGVQAQT 178

Query: 61  LANVYLALDNNLEIIPV 73
           +AN YLA + NL I+PV
Sbjct: 179 VANFYLAFEANLTIVPV 195

[Close]
BLAST of CSPI04G19410 vs. TAIR10
Match: AT1G06220.2 (AT1G06220.2 Ribosomal protein S5/Elongation factor G/III/V family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.0e-08
Identity = 26/63 (41.27%), Postives = 45/63 (71.43%), Query Frame = 1 

Query: 10  KNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALDNNLEI 69
           ++++Y  N++DTPGHV+FS E++ SL   +GA+L+VDA++GV   T   +  A+ ++L I
Sbjct: 205 RSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEGVMVNTERAIRHAIQDHLPI 264

Query: 70  IPV 73
           + V
Sbjct: 265 VVV 267

[Close]
BLAST of CSPI04G19410 vs. TAIR10
Match: AT5G25230.1 (AT5G25230.1 Ribosomal protein S5/Elongation factor G/III/V family protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.8e-08
Identity = 25/63 (39.68%), Postives = 44/63 (69.84%), Query Frame = 1 

Query: 10  KNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALDNNLEI 69
           ++++Y  N++DTPG+V+FS E++ SL   +GA+ +VDA+QGV   T   +  A+ ++L I
Sbjct: 191 RSKSYLCNIMDTPGNVNFSDEMTASLRLADGAVFIVDAAQGVMVNTERAIRHAIQDHLPI 250

Query: 70  IPV 73
           + V
Sbjct: 251 VVV 253

[Close]
BLAST of CSPI04G19410 vs. TAIR10
Match: AT1G56070.1 (AT1G56070.1 Ribosomal protein S5/Elongation factor G/III/V family protein)

HSP 1 Score: 53.1 bits (126), Expect = 8.8e-08
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 

Query: 14  YCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQT 56
           Y +NLID+PGHVDFS EV+ +L   +GAL+VVD  +GV  QT
Sbjct: 98  YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT 139

[Close]
BLAST of CSPI04G19410 vs. NCBI nr
Match: gi|778694762|ref|XP_011653860.1| (PREDICTED: translation factor GUF1 homolog, chloroplastic [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 140 QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 199

Query: 61  LALDNNLEIIPV 73
           LALDNNLEIIPV
Sbjct: 200 LALDNNLEIIPV 211

[Close]
BLAST of CSPI04G19410 vs. NCBI nr
Match: gi|659069363|ref|XP_008449446.1| (PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X3 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 140 QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 199

Query: 61  LALDNNLEIIPV 73
           LALDNNLEIIPV
Sbjct: 200 LALDNNLEIIPV 211

[Close]
BLAST of CSPI04G19410 vs. NCBI nr
Match: gi|659069365|ref|XP_008449456.1| (PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X4 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 140 QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 199

Query: 61  LALDNNLEIIPV 73
           LALDNNLEIIPV
Sbjct: 200 LALDNNLEIIPV 211

[Close]
BLAST of CSPI04G19410 vs. NCBI nr
Match: gi|659069359|ref|XP_008449429.1| (PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 140 QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 199

Query: 61  LALDNNLEIIPV 73
           LALDNNLEIIPV
Sbjct: 200 LALDNNLEIIPV 211

[Close]
BLAST of CSPI04G19410 vs. NCBI nr
Match: gi|659069361|ref|XP_008449438.1| (PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 

Query: 1   QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 60
           QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY
Sbjct: 140 QAARMRYMYKNEAYCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 199

Query: 61  LALDNNLEIIPV 73
           LALDNNLEIIPV
Sbjct: 200 LALDNNLEIIPV 211

The following BLAST results are available for this feature:
BLAST of CSPI04G19410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
GUFP_POPTR4.8e-3294.44Translation factor GUF1 homolog, chloroplastic OS=Populus trichocarpa GN=POPTRDR... [more]
GUFP_VITVI1.8e-3193.06Translation factor GUF1 homolog, chloroplastic OS=Vitis vinifera GN=VITISV_01325... [more]
GUFP_RICCO1.8e-3193.06Translation factor GUF1 homolog, chloroplastic OS=Ricinus communis GN=RCOM_17673... [more]
GUFP_ARATH3.5e-3090.28Translation factor GUF1 homolog, chloroplastic OS=Arabidopsis thaliana GN=At5g08... [more]
GUFP_ORYSJ1.0e-2990.28Translation factor GUF1 homolog, chloroplastic OS=Oryza sativa subsp. japonica G... [more]
BLAST of CSPI04G19410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L295_CUCSA1.7e-3198.61Uncharacterized protein OS=Cucumis sativus GN=Csa_4G437520 PE=4 SV=1[more]
A0A068V5F4_COFCA2.4e-3094.44Translation factor GUF1 homolog, mitochondrial OS=Coffea canephora GN=GSCOC_T000... [more]
U5GV27_POPTR5.4e-3094.44Translation factor GUF1 homolog, mitochondrial OS=Populus trichocarpa GN=POPTR_0... [more]
A0A061DN87_THECC5.4e-3095.83Translation factor GUF1 homolog, chloroplastic OS=Theobroma cacao GN=TCM_003433 ... [more]
A0A061DQ14_THECC5.4e-3095.83Translation factor GUF1 homolog, mitochondrial OS=Theobroma cacao GN=TCM_003433 ... [more]
BLAST of CSPI04G19410 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08650.12.0e-3190.28 Small GTP-binding protein[more]
AT5G39900.11.1e-2168.83 Small GTP-binding protein[more]
AT1G06220.21.0e-0841.27 Ribosomal protein S5/Elongation factor G/III/V family protein[more]
AT5G25230.18.8e-0839.68 Ribosomal protein S5/Elongation factor G/III/V family protein[more]
AT1G56070.18.8e-0859.52 Ribosomal protein S5/Elongation factor G/III/V family protein[more]
BLAST of CSPI04G19410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778694762|ref|XP_011653860.1|1.1e-31100.00PREDICTED: translation factor GUF1 homolog, chloroplastic [Cucumis sativus][more]
gi|659069363|ref|XP_008449446.1|1.1e-31100.00PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X3 [Cucumis me... [more]
gi|659069365|ref|XP_008449456.1|1.1e-31100.00PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X4 [Cucumis me... [more]
gi|659069359|ref|XP_008449429.1|1.1e-31100.00PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Cucumis me... [more]
gi|659069361|ref|XP_008449438.1|1.1e-31100.00PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X2 [Cucumis me... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000795TF_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0010218 response to far red light
biological_process GO:0008150 biological_process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0006364 rRNA processing
biological_process GO:0010114 response to red light
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0009637 response to blue light
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0045727 positive regulation of translation
biological_process GO:0015979 photosynthesis
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
cellular_component GO:0009507 chloroplast
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G19410.1CSPI04G19410.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000795Transcription factor, GTP-binding domainPROFILEPS51722G_TR_2coord: 1..79
score: 23
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 8..72
score: 4.6
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..72
score: 4.13
NoneNo IPR availablePANTHERPTHR23115TRANSLATION FACTORcoord: 1..72
score: 1.4
NoneNo IPR availablePANTHERPTHR23115:SF189TRANSLATION FACTOR GUF1 HOMOLOG, CHLOROPLASTICcoord: 1..72
score: 1.4
NoneNo IPR availablePFAMPF00009GTP_EFTUcoord: 8..71
score: 4.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G19410Cla006103Watermelon (97103) v1cpiwmB341
CSPI04G19410Csa4G437520Cucumber (Chinese Long) v2cpicuB181
CSPI04G19410ClCG04G003150Watermelon (Charleston Gray)cpiwcgB314
CSPI04G19410Cucsa.169880Cucumber (Gy14) v1cgycpiB267
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G19410Bottle gourd (USVL1VR-Ls)cpilsiB249
CSPI04G19410Melon (DHL92) v3.6.1cpimedB316
CSPI04G19410Cucumber (Gy14) v2cgybcpiB170
CSPI04G19410Silver-seed gourdcarcpiB0513
CSPI04G19410Cucumber (Chinese Long) v3cpicucB212
CSPI04G19410Watermelon (97103) v2cpiwmbB312
CSPI04G19410Cucurbita maxima (Rimu)cmacpiB886
CSPI04G19410Cucurbita moschata (Rifu)cmocpiB867